Phvul.007G224700.2
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Phvul.007G224700.2 vs. DB:Swiss
Match: P2A15_ARATH (F-box protein PP2-A15 OS=Arabidopsis thaliana OX=3702 GN=PP2A15 PE=2 SV=1) HSP 1 Score: 469.929 bits (1208), Expect = 1.207e-167 Identity = 222/296 (75.00%), Postives = 258/296 (87.16%), Query Frame = 1 Query: 1 MGASLSSV--GANGSTIGPGLGDIPECCVACVFLYLTPPEICNLARLNRSFRGAASSDSVWESKLPRNYQDLLALVPPERHGNLSKKDIFALLSRPLPFDHGHKEVWLDRVTGRVCMSISARAMAITGIEDRRYWNWIPTEESRFHTVAYLQQIWWFEVDGEVTFPFPADIYTLSFRLHLGRFSKRLGRRVCNYEHTHGWDIKPVKFELSTSDGQQASSECCLDESVIDDTYGNHKRGYWIDYKVGEFIVSGSEPTTHVRFSMKQIDCTHSKGGLCVDSVFIIP-SDLRERKRKCI 879 MG+SLS++ G NG +GPGLGDIPE CVACVF+YLTPPEICNLA LNRSFRGAASSDSVWE KLP NYQDLL L+PPER+ +LSKKDIFA+LSRP+PFD +KEVW+DRVTGRVCM+ISAR M+ITGIEDRRYWNWIPTEESRFH VAYLQQIWWFEVDG V F P +Y+LSFR+HLGRF+KRLGRRVC++E THGWD+KPV+F LSTSDGQ+AS E LD+ ++ G HKRGYWI+Y+VGEFIV+GSEP+T +++SMKQIDCTHSKGGLCVDSVFI P D++E KRK + Sbjct: 1 MGSSLSNLNDGTNGLAMGPGLGDIPESCVACVFMYLTPPEICNLAGLNRSFRGAASSDSVWEKKLPENYQDLLDLLPPERYHSLSKKDIFAVLSRPIPFDDDNKEVWIDRVTGRVCMAISARGMSITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGTVRFHLPPGVYSLSFRIHLGRFTKRLGRRVCHFELTHGWDLKPVRFSLSTSDGQEASCEYYLDDVERNEALGKHKRGYWIEYRVGEFIVNGSEPSTEIQWSMKQIDCTHSKGGLCVDSVFINPIGDVKEHKRKAV 296
BLAST of Phvul.007G224700.2 vs. DB:Swiss
Match: P2A12_ARATH (F-box protein PP2-A12 OS=Arabidopsis thaliana OX=3702 GN=P2A12 PE=2 SV=1) HSP 1 Score: 314.309 bits (804), Expect = 2.224e-106 Identity = 153/289 (52.94%), Postives = 201/289 (69.55%), Query Frame = 1 Query: 10 SLSSVGANGSTIGPGLGDIPECCVACVFLYLTPPEICNLARLNRSFRGAASSDSVWESKLPRNYQDLLALVPPERHGNLSKKDIFALLSRPLPFDHGHKEVWLDRVTGRVCMSISARAMAITGIEDRRYWNWIPTEESRFHTVAYLQQIWWFEVDGEVTFPFPADIYTLSFRLHLGRFSKRLGRRVCNYEHTHGWDIKPVKFELSTSDGQQASSECCLDESVIDDTYGNHKRGYWIDYKVGEFIVSGSE-PTTHVRFSMKQIDCTHSKGGLCVDSVFIIPSDLRERKRK 873 S SS + + + PGLGD+PE CVA + L P EIC ++LNR+FRGA+ +D VWESKLP+NY+D+L + NL K+ ++A LSR FD K+VW+D+ T VC+SISA+ ++ITGI+DRRYW+ IPT+ESRF +VAYLQQIWWFEVDGE+ FPFP Y++ FRL LGR K GRRVCN E HGWDIKPV+F+L T DGQ +SS+C L E RG WI Y G+ +V S +T ++FSM QIDCTH+KGGL +DSV + PS +++ ++ Sbjct: 13 SSSSCFGDRNILKPGLGDLPEACVAIIVENLDPVEICRFSKLNRAFRGASWADCVWESKLPQNYRDVLEKILGGFPENLQKRHLYAFLSRINSFDDATKKVWIDKRTSGVCLSISAKGLSITGIDDRRYWSHIPTDESRFSSVAYLQQIWWFEVDGEIDFPFPVGTYSIFFRLQLGRSGKWFGRRVCNTEQVHGWDIKPVRFQLWTEDGQYSSSQCMLTE-----------RGNWIHYHAGDVVVRESNRSSTKIKFSMTQIDCTHTKGGLSLDSVVVYPSSCKDQLKR 290
BLAST of Phvul.007G224700.2 vs. DB:Swiss
Match: P2A13_ARATH (F-box protein PP2-A13 OS=Arabidopsis thaliana OX=3702 GN=PP2A13 PE=1 SV=1) HSP 1 Score: 313.538 bits (802), Expect = 4.518e-106 Identity = 151/267 (56.55%), Postives = 193/267 (72.28%), Query Frame = 1 Query: 55 LGDIPECCVACVFLYLTPPEICNLARLNRSFRGAASSDSVWESKLPRNYQDLLALVPPE-RHGNLSKKDIFALLSRPLPFDHGHKEVWLDRVTGRVCMSISARAMAITGIEDRRYWNWIPTEESRFHTVAYLQQIWWFEVDGEVTFPFPADIYTLSFRLHLGRFSKRLGRRVCNYEHTHGWDIKPVKFELSTSDGQQASSECCLDESVIDDTYGNHKRGYWIDYKVGEFIVSGSEPTTHVRFSMKQIDCTHSKGGLCVDSVFIIPSD 852 L D+PE CVA + L PPEIC LARLNR FR A+S+D +WESKLP NY+ + V E L KKD++A LS+P FD G KE+W+D+ TGR+C+SIS++A+ ITGI+DRRYW+ IPT+ESRF + AY+QQIWWFEV GE FP+ Y+L FR+ LG+ SKRLGRR+CN EH HGWDIKPV+F+L+TSD QQA S C Y N+ G W Y VG+F V+ + +T ++FSM QIDCTH+KGGLC+DSV I+P + Sbjct: 25 LVDLPENCVALIMTRLDPPEICRLARLNRMFRRASSADFIWESKLPANYRVIAHKVFDEITLTKLIKKDLYAKLSQPNLFDDGTKELWIDKNTGRLCLSISSKALRITGIDDRRYWSHIPTDESRFQSAAYVQQIWWFEVGGEFEIQFPSGTYSLFFRIQLGKTSKRLGRRICNSEHIHGWDIKPVRFQLATSDNQQAVSLC----------YLNNNPGSWSHYHVGDFKVTNPDVSTGIKFSMTQIDCTHTKGGLCIDSVLILPKE 281
BLAST of Phvul.007G224700.2 vs. DB:Swiss
Match: P2A11_ARATH (F-box protein PP2-A11 OS=Arabidopsis thaliana OX=3702 GN=PP2A11 PE=1 SV=1) HSP 1 Score: 288.5 bits (737), Expect = 2.513e-96 Identity = 143/286 (50.00%), Postives = 196/286 (68.53%), Query Frame = 1 Query: 10 SLSSVGANGSTIGPGLGDIPECCVACVFLYLTPPEICNLARLNRSFRGAASSDSVWESKLPRNYQDLLALVPPERHGNLSKKDIFALLSRPLPFDHGHKEVWLDRVTGRVCMSISARAMAITGIEDRRYWNWIPTEESRFHTVAYLQQIWWFEVDGEVTFPFPADIYTLSFRLHLGRFSKRLGRRVCNYEHTHGWDIKPVKFELSTSDGQQASSECCLDESVIDDTYGNHKRGYWIDYKVGEFIVS-GSEPTTHVRFSMKQIDCTHSKGGLCVDSVFIIPSDLRER 864 +LSS + + PGLGD+PE CVA + L P EIC ++LN +F GA+ +D VWESKLP +Y+ +L + NL K+DIF LSR FD G+K+ W+D+ TG +C+ SA+ ++ITGI+DRRYW+ IP+++SRF +VAY+QQIWWF+VDGE+ FPFPA Y++ FRL LG+ KR G +V + E HGW+IKPV+F+LST DGQ +SS+C L E+ G W Y G+F+V +T ++FSM QIDCTH+KGGLCVDSV + PS ++R Sbjct: 11 NLSSCYGDRDLLQPGLGDLPESCVALILQNLDPVEICRFSKLNTAFHGASWADFVWESKLPPDYKLILEKILGSFPDNLRKRDIFTFLSRVNSFDEGNKKAWVDKRTGGLCLCTSAKGLSITGIDDRRYWSHIPSDDSRFASVAYVQQIWWFQVDGEIDFPFPAGTYSVYFRLQLGKPGKRFGWKVVDTEQVHGWNIKPVRFQLSTEDGQHSSSQCMLTEA-----------GNWSHYHAGDFVVGKSKSSSTKIKFSMTQIDCTHTKGGLCVDSVVVYPSSCKDR 285
BLAST of Phvul.007G224700.2 vs. DB:Swiss
Match: P2A14_ARATH (F-box protein PP2-A14 OS=Arabidopsis thaliana OX=3702 GN=PP2A14 PE=1 SV=1) HSP 1 Score: 273.478 bits (698), Expect = 2.545e-90 Identity = 138/295 (46.78%), Postives = 190/295 (64.41%), Query Frame = 1 Query: 1 MGASLSSVGANGSTIGP--GLGDIPECCVACVFLYLTPPEICNLARLNRSFRGAASSDSVWESKLPRNYQDLLALVPPERHGN-------LSKKDIFALLSRPLPFDHGHKEVWLDRVTGRVCMSISARAMAITGIEDRRYWNWIPTEESRFHTVAYLQQIWWFEVDGEVTFPFPADIYTLSFRLHLGRFSKRLGRRVCNYEHTHGWDIKPVKFELSTSDGQQASSECCLDESVIDDTYGNHKRGYWIDYKVGEFIVSGSEPTTHVRFSMKQIDCTHSKGGLCVDSVFIIPSDLR 858 MGA+ SS+ + G GL D+PE C+ +F+Y+ PPEIC LAR+N+SF A+ SD+VWE KLP NY+ L+ + ++ KK+I+A L RP FD G KE WLD+ +G+V ++IS +AM ITGI+DRRYW I ++ESRF ++ YL+QIWW E G++ F F Y+L F++ LG+ ++ GR+ C+ + HGWDIKPV+F+LSTSDGQ A SE LDES G W+ + G+F+V V+FSM QIDCTH+KGGLC+D V I P + R Sbjct: 1 MGAASSSIVRSEPFAGKLCGLEDVPENCITAMFMYMEPPEICLLARVNKSFHRASRSDAVWEDKLPSNYKFLVRRILEDQQQVGVKDKLIYRKKEIYARLCRPNLFDTGTKEAWLDKRSGKVFLAISPKAMKITGIDDRRYWEHISSDESRFGSITYLRQIWWLEAVGKIRFEFAPGKYSLLFKIQLGKPIRKCGRKTCSLDQVHGWDIKPVRFQLSTSDGQCAMSERHLDES-----------GRWVYHHAGDFVVENQNSPVWVKFSMLQIDCTHTKGGLCLDCVIICPFEYR 284
BLAST of Phvul.007G224700.2 vs. DB:Swiss
Match: P2B10_ARATH (F-box protein PP2-B10 OS=Arabidopsis thaliana OX=3702 GN=PP2B10 PE=1 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 2.071e-27 Identity = 68/268 (25.37%), Postives = 125/268 (46.64%), Query Frame = 1 Query: 67 PECCVACVFLYLTPPEICNLARLNRSFRGAASSDSVWESKLPRNYQDLLALVPPERHGNLSKKDIFALLSRPLPFDHGHKEVWLDRVTGRVCMSISARAMAITGIEDRRYWNWIPTEESRFHTVAYLQQIWWFEVDGEVTFPFPADIYTLSFRLHLGRFSKRLGRRVCNYEHTHGWDIKPVKFELSTSDGQQASSECCLDESV----IDDTYGNHKRGYWIDYKVGEFIVSGS-EPTTHVRFSMKQIDCTHSKGGLCVDSVFIIPSDL 855 PE C++ + + P + C A ++++F SD +WE LP +Y+ +L+PP R + K+ F+L + P+ FD K VWL++ +G+ C+ +SA ++I ++ +YW WIP ESRF VA L+ + WFE+ G + LS R + G C +G+ ++ + + + C E++ + + W++ ++GEF G + S + + K GL + + I P+ + Sbjct: 18 PEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYE---SLIPPSRVFSSKKELYFSLCNDPVLFDDDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQYWQWIPIPESRFEKVAKLRDVCWFEIRGR------TNTRVLSPRTRYSAYIVFKGVDKC-----YGFQNVAIEAAVGVVGQEPSRRLICFSEAIRRGRRNVVKPKQREDGWMEIELGEFFNDGGIMDNDEIEMSALETKQLNRKCGLIIQGIEIRPAKI 271
BLAST of Phvul.007G224700.2 vs. DB:Swiss
Match: PP2B8_ARATH (Putative F-box protein PP2-B8 OS=Arabidopsis thaliana OX=3702 GN=PP2B8 PE=4 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.965e-25 Identity = 80/288 (27.78%), Postives = 134/288 (46.53%), Query Frame = 1 Query: 55 LGDIPECCVACVFLYLTPPEICNLARLNRSFRGAASSDSVWESKLPRNYQDLLALVPPERHGNLSKKDI-FALLSRPLPFDHGHKEVWLDRVTGRVCMSISARAMAITGIEDRRYWNWIPTEESRFHTVAYLQQIWWFEVDGEVTFPFPADIYTLSFRLHLGRFSKRLGRRVCNYEHTHGWDIKPVKFELSTSDGQQASSEC----CLDESVIDDTYGNHKRGY-----------WIDYKVGEFIVSG----SEPTTHVRFSMKQIDCTHSKGGLCVDSVFIIPSDLR 858 L D+PE CV+ + + +P + C LA ++++F A SD VWE +P Y+ L++ LSKK++ FAL + + D G K +W+++ + C+ ISA +AI + W WIP ++RF TVA L ++ FE+ G + + + + R K+L +C +G++ + GQ C C DE+ +D+ + RG W++ K+GEF G + V KQ H K GL + + I P+++R Sbjct: 36 LDDLPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLIS--QSRAFKFLSKKELYFALCDKSVLIDDGKKSLWIEKANAKRCIMISAMNLAIAWGNSPQSWRWIPDPQARFETVAELLEVCLFEIRGRIN----SRVISPKTRYSAYIVYKKLN--IC-----YGFE-NVAVEVVVGVVGQDLEESCRRYICFDET-MDEQFRRRDRGKNLVKPERRKDGWMEIKIGEFFNEGGLLNDDEIEMVALEAKQ---RHWKRGLIIQGIEIRPTNIR 305
BLAST of Phvul.007G224700.2 vs. DB:Swiss
Match: PP2B2_ARATH (Putative F-box protein PP2-B2 OS=Arabidopsis thaliana OX=3702 GN=PP2B2 PE=4 SV=2) HSP 1 Score: 102.064 bits (253), Expect = 7.540e-24 Identity = 56/156 (35.90%), Postives = 88/156 (56.41%), Query Frame = 1 Query: 22 VGANGSTI--GPGLGD-IPECCVACVFLYLTPPEICNLARLNRSFRGAASSDSVWESKLPRNYQDLLALVPPERHGNLSKKDIFALLSRPLPFDHGHKEVWLDRVTGRVCMSIS-ARAMAITGIEDRRYWNWIPTEESRFHTVAYLQQIWWFEVDG 477 V ++G I GP L D +PE C++ + + +P + C A ++++F A +SDSVW+ LP +Y +LVPP R + K+ FA+ P+ + G K WL++ G+ C +S ++M IT + +YW WI E+RF V L + WFEV G Sbjct: 33 VESSGGAIISGPSLFDNLPEDCISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPSDYS---SLVPPSRVFSSKKELYFAICDNPVLVEDGGKSFWLEKENGKKCFMLSPKKSMWITWVSTPQYWRWISIPEARFEEVPELLNVCWFEVRG 185
BLAST of Phvul.007G224700.2 vs. DB:Swiss
Match: P2B11_ARATH (F-box protein PP2-B11 OS=Arabidopsis thaliana OX=3702 GN=PP2B11 PE=1 SV=1) HSP 1 Score: 99.7525 bits (247), Expect = 2.054e-23 Identity = 74/277 (26.71%), Postives = 127/277 (45.85%), Query Frame = 1 Query: 55 LGDIPECCVACVFLYLTPPEICNLARLNRSFRGAASSDSVWESKLPRNYQDLLALVP--PERHGNLSKKDIFALLSRPLPFDHGHKEVWLDRVTGRVCMSISARAMAITGIEDRRYWNWIPTEESRFHTVAYLQQIWWFEVDGEVTFPFPAD--IYTLSFRLHLGRFSKRLGRRVCNYEHTHGWDIKPVKFELSTSDGQQASSECCLDESVI---DDTYGNH------KRGYWIDYKVGEFIVSGSEPTTHVRFSMKQIDCTHSKGGLCVDSVFIIP 846 + ++PE C+A + TP ++C L+ ++ FR AA SD VW LP ++ A P R K+ F+L+ PL + L+R +G C ++ARA+ I ++RYW+WI +RF VA L +WW E+ G++ +D +Y F V + H+ +PV+ L +D + S++ + S+I D+ G +R W + ++G+F + + S+K+ + K GL V + I P Sbjct: 1 MNNLPEDCIAKILSLTTPLDVCRLSAVSSIFRSAAGSDDVWNHFLPADFPAGFAAPAGLPTR-----KQLFFSLVDNPLLINGTLLSFSLERKSGNKCYMMAARALNIVWGHEQRYWHWISLPNTRFGEVAELIMVWWLEITGKINITLLSDDTLYAAYF--------------VFKWNHSPYGFRQPVETSLVLADTE--STDNVVQPSMISLMQDSGGEEGQSPVLRRDGWYEVELGQFFKRRGD-LGEIEMSLKETKGPYEKKGLIVYGIEIRP 255
BLAST of Phvul.007G224700.2 vs. DB:Swiss
Match: FB95_ARATH (F-box protein At2g02240 OS=Arabidopsis thaliana OX=3702 GN=At2g02240 PE=2 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 9.045e-23 Identity = 75/286 (26.22%), Postives = 126/286 (44.06%), Query Frame = 1 Query: 28 ANGSTIGPGLGD---IPECCVACVFLYLTPPEICNLARLNRSFRGAASSDSVWESKLPRNYQDLLALVPPERHGNLSKKDIFALLSRPLPFDHGHKEVWLDRVTGRVCMSISARAMAITGIEDRRYWNWIPTEESRFHTVAYLQQIWWFEVDGEVTFPFPADIYTLSFRLHLGRFSKRLGRRVCNYEHTHGWDIKPVKFELSTSDGQQASSECCL---------DESVIDDTYGNHKRGYWIDYKVGEFIVSGSEPTTHVRFSMKQIDCTHSKGGLCVDSVFIIPS 849 + G + PG +PE C++ + + +P + C A ++++F A SSD VW+ LP Y+ +LV R K+ FAL P+ + G K WL++ +G+ C+ +S++ + IT YW WI ESRF+ +A L + WFE+ G+ + A + + R K R G PV+ L GQ++S D T + + W++ ++GEF E + FS+ +I K GL + + P+ Sbjct: 49 SGGEIVSPGTSPFDVLPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYE---SLVSRSRVFASKKELYFALCHNPVLIEDGKKSFWLEKASGKRCIMLSSKELWITWGSSPEYWQWISIPESRFNKIAELLDVCWFEIRGKTS----ARVLSPGTRYSAYIVFKTKDR-------CPGLGHLPVEVGLGLV-GQESSKRFIYFIGPRDRRGRRETRDVTKPDQREDGWMEAELGEFF--NEERCDEIEFSVIEIKSPSWKSGLIIQGIEFRPT 317 The following BLAST results are available for this feature:
BLAST of Phvul.007G224700.2 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.007G224700.2_Pv_G19833_v2.1 >Phvul.007G224700.2_Pv_G19833_v2.1 ID=Phvul.007G224700.2_Pv_G19833_v2.1; Name=Phvul.007G224700.2_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=294bpback to top mRNA from alignment at Chr07:34825858..34829956+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Phvul.007G224700.2_Pv_G19833_v2.1 ID=Phvul.007G224700.2_Pv_G19833_v2.1; Name=Phvul.007G224700.2; organism=Phaseolus vulgaris; type=mRNA; length=4099bp; location=Sequence derived from: Chr07:34825858..34829956+ (Phaseolus vulgarisback to top Coding sequence (CDS) from alignment at Chr07:34825858..34829956+ >Phvul.007G224700.2_Pv_G19833_v2.1 ID=Phvul.007G224700.2_Pv_G19833_v2.1; Name=Phvul.007G224700.2; organism=Phaseolus vulgaris; type=CDS; length=882bp; location=Sequence derived from: Chr07:34825858..34829956+ (Phaseolus vulgarisback to top |