Phvul.007G237900.1

Transcript Overview
NamePhvul.007G237900.1
Unique NamePhvul.007G237900.1_Pv_G19833_v2.1
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr07supercontigChr07:36193521..36197934 +Phaseolus vulgaris G19833 genome v2.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phaseolus vulgaris G19833 genome v2.12019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.12019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot2019-10-18
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pvvuR627Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
ccpvL0752Cajanus cajan Asha genome v1.0Cajanus cajan
anpvL0344Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0345Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1238Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
aspvL463Vigna angularis Jingnong 6 genome v1.1Vigna angularis
pvzwsR593Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvzwsR594Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvzwsR607Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvvfhR624Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR641Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvtifR631Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvrvR590Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvuaR551Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvssR695Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR713Vicia sativa cv. Studenica genome v1.0Vicia sativa
avjpvL428Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ccapvL323Cajanus cajan cv. Asha genome v2.0Cajanus cajan
pvvumR643Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvvaR710Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR714Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvasR691Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR692Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvpvfR570Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvvunR578Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Vigst.08G214200.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
evm.model.Chr07.2017.1.62122c09Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Va02G011830.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vum_08G02299.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vigan.08G308700.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
rna-KK1_006242Cajanus cajan Asha genome v1.0Cajanus cajan
LR48_mrnaVigan02g055700Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Cc_v2.0_02630.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vigun07g050600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
rna-XM_014656991.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vigun07g050600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
PvulFLAVERTChr07.1501Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Phvul.007G237900Phvul.007G237900_Pv_G19833_v2.1Phaseolus vulgarisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Phvul.007G237900.1_Pv_G19833_v2.1Phvul.007G237900.1_Pv_G19833_v2.1Phaseolus vulgarispolypeptide
Phvul.007G237900.1Phvul.007G237900.1_Pv_G19833_v2.1-proteinPhaseolus vulgarispolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.007G237900.1.v2.1.five_prime_UTR.1Phvul.007G237900.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgarisfive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.007G237900.1.v2.1.CDS.1Phvul.007G237900.1.v2.1.CDS.1_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.007G237900.1.v2.1.CDS.2Phvul.007G237900.1.v2.1.CDS.2_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.007G237900.1.v2.1.CDS.3Phvul.007G237900.1.v2.1.CDS.3_Pv_G19833_v2.1Phaseolus vulgarisCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.007G237900.1.v2.1.three_prime_UTR.1Phvul.007G237900.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgaristhree_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Phvul.007G237900.1 vs.
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 280..324
NoneNo IPR availableCOILSCoilCoilcoord: 332..373
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 140..169
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 140..155

Sequences
The following sequences are available for this feature:

protein sequence of Phvul.007G237900.1_Pv_G19833_v2.1

>Phvul.007G237900.1_Pv_G19833_v2.1 ID=Phvul.007G237900.1_Pv_G19833_v2.1; Name=Phvul.007G237900.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=418bp
MDLSDTPEALILTSLQDEKEPLKDDSAIGSNAYKDVTKDKTFDLQSVSSY
SSGEGLPYAPDGWPNAGDVWGWKVAGRRSKGGYFTDRSLIPPASLQKGTR
KLEFRSKADIKRYLHSNFPNMTLEAFFALFSWMIPSAEETPTKVEDDDTG
SQRKSRRKSVGRPRKSSALVPVRPCVTPDQVAKFDAYLDNLDDMLDMPHT
ETTASDHATCASALDAESIECCKKKLSSLLALDFPSLVSSNDVAEVAILA
SQIREDPNLTVDQLFKLKLVEQVPLAGEAFLEAKESIEEADKRMADLQAK
KLEIPTLKKEYNELKEKLSEREAEMDISTLSIKEIDDQIRQLQLKRNRIS
SALETMQKDKDKLTSELSNVANSISTIVNEIQSGLSQKSKWDLKKANNVR
RVAEIQEKFVTLRGLTF*
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mRNA from alignment at Chr07:36193521..36197934+

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.007G237900.1_Pv_G19833_v2.1 ID=Phvul.007G237900.1_Pv_G19833_v2.1; Name=Phvul.007G237900.1; organism=Phaseolus vulgaris; type=mRNA; length=4414bp; location=Sequence derived from: Chr07:36193521..36197934+ (Phaseolus vulgaris
CTTGAAATTTGGATATTCTTAAATTTGAACCCTGGTTAAAAATCCTCGAG
ATGCTCTTAACCCCCTTCTCTATATCAACAATTATGTCTGAAGCATTTTT
GGTTTCTCATCCCCAAATCGCTCCTCCTCTCCAAACGCCGTGACACTCTC
TCCGGCAACCTACCACACGACGGTTTGCCCGGGTTTTCCCCTTTCTTCTT
CCGCGGTGTCCCCTCCGATTCCCTTAATTCCGACATTTCCAATTTCTGCG
TATTTGTCCCAATTCATCGGCGACCATTTTCCTCTTTCACCCATGGATCT
CTCAGACACTCCAGAAGCTCTCATTCTTACTAGGTTAATTTTTGCCCCCT
TTTACTTCTCAGTCCTCTTTTCTGTTCTCACTCTTGTTGATTTACCATTT
TTTTTCAAGCTCTTGTTAAAAAAAAGCATCTTTTTTTATTTTATTTCTTT
TTGGGTTGCTTGCTCTGGTTTTTCTTACCGCTAAAGAGAATGTGTGCAGT
TATGAAATATGGGGTTGGTTGTTACACTGAGATCAGATAAGCCATGCGTG
CCTTTTTATTTATGTTATGTTTGGATGTATGTCTTGGGATCCAGAGGCAC
TTGTTGGAGAAGACAAACTTCTCGAAGAAGAGTTGGAGGAGGGGAAAATA
AGAAAAAAAATGCATTAGATGTTATATAGTTTTTTTTTTTTTTTTTTTAA
TTTAAACTTTTTAACTTCTGCATGAGCTAATTTAACTTACCAAGAGGATT
CATTTCATTTCTTATTTTTCTCTCTTAGGAGTACTTCTGTAAAAGTTGTC
CAAACAAGCCCAAAAGGAGGGAAATGAAAATGATTTTTCCTTTTAACCTT
TGAAGGAAGTCAAAGATTCATTTTTTAAGCTTAAAAATTAGTTATTAGAA
GAAGAAGAAAACAAATATAAGAGACCTGAAAGAGCTACCATGCAAATTAG
AAGTTAAGAGATCTTTACCGAAAATATAGTTTTTATTTTTCTAACAGAAA
CTTCTCAAAAACTGTTCTAGCTTTGGGTTCAAACTTAGTCAAATGAACAG
TTTGTTTGGTTTCATTGGTATGTTTAGGTGAAATAATTATGAAGAAAAAC
ACGAGCATGTTTCTCTAAAATTAAAATTATTTTATGTATAAGTTAATTAA
TTGATATGTTGTAGTAAAAGATGATTTCTAATTTGTGCTCAAACTTGTGA
AGTTTATTCAAACATAACCTCAAAATAAACTAATTTTAGTTTAGGAATGT
GTGTTTTCATTTCTTTTTAATTCAGGATTATTTGTTGTTTTCCTTGTTGA
TTTCTCAGTTGTTGACCATAATTGGGTTGTTCATGTCAAGTTCTGTGTTC
TGTGAAAATTCAATGAAGGTCTTACCCGTGTAGTGGACTTAACGGTTAAC
TATCATGAATTTCTGTGCTTTTATATAAGAATGTTGGGCGTTGAAAAAAT
AGTCTTGTTGTAAGGGCCATGCTTATTTGGATTAATTTATTTTGAAGAAC
ACTTTAAGGAAAAAGAAAGAAACTTTTTTGAGAATTTTCTTTTTTCATTT
TTTAAAGGTGGGAGAGTCCTTTTGATGTTGTTGTTGAGGATGTTATTGAG
GGAAAAAATTTAAGGTAAATAATATCTACTAATGTTTGGTCTTGAATTGA
GTCAATGGTGTCATGTCATGTGTGATCTATGCAGTTCATGTGTGGGTTTC
AATTAAGAGAGCTCTAAACTACTTTTACTATCAAAGAAACATATTTTTCC
TTCTTCATTTTGTACAATGAACTTCAGAATTAAGTTGATCCTAGAAGTAC
TTTCCCATCTTTTATCGAAACATGGCCTTAGTCTACTTCACCAAATGGGA
TAACGCTTTATTCTTTATTTTTTTTAAATGTTCTTTCTTTTAAACATGAG
TGAGCAAGACAATCGAAATGTGGTGACCGAGTAATTATTGAAGGCTCGTA
ATACTTTTTTTCCACCACAAATCTTTCACATATCAATCATTTTTTGCCTT
ACTGGAGTCTGTAAAGCTATTTTTTTTCATTTATGCGGTTTATAACACAT
GCCACACTACTAATAAGTTAATAACACATGTTAAATCTCGGTGAGATTAT
GTTAAGCACTGATTGTTGGCCCGTGGTCATGATATTACTATTTAGCTCAA
TTCCTAAGTAAGTGGTGAATGAGGTCAGCAACATTTTCACCTGTGTACCC
AGTATTTTGTGATCATCTTCACACTAGTTGGCTTACATTTGCACAATGGA
GTGACTTAAGTAGTGAGGTTAAGTTATAGGAAATTTCATTTGTATCATCA
AATTTATTCTACAAGCACATGAGTACATTAACAATTATAACGTGCTAATA
TACAGGAAAAAGTAACCAATAGTGTGTTTCTATGGACTCTTCAGCAGTTG
GCATTGTCTTTTTGTTATTGCAGTCTTCAGGATGAAAAGGAACCCTTGAA
GGATGACTCTGCAATTGGCAGCAATGCTTATAAGGATGTGACAAAGGATA
AAACCTTTGATCTTCAATCTGTGTCATCTTACTCTTCTGGCGAAGGTTTG
CCATATGCACCTGATGGGTGGCCAAATGCTGGTGATGTATGGGGCTGGAA
AGTGGCGGGAAGGAGGTCCAAGGGTGGATATTTTACTGACAGATCCCTTA
TCCCTCCAGCATCTCTTCAGAAGGGTACTCGCAAGCTAGAGTTTCGGAGC
AAGGCTGATATTAAGAGATATCTTCATTCAAATTTTCCTAACATGACACT
TGAAGCATTCTTTGCTTTATTTAGCTGGATGATTCCCTCAGCTGAGGAAA
CCCCCACAAAAGGTTAGCCCAAAACAGTTTCACAATTTTCTTTTTCAACC
CTGTGCTGTTATTTTTTCATTCATCGTTGCCTAGTTTCTTTTAATTGTTT
TTATTTTGGTACTGTTTCGATTGGCTGTAGTTTAAGTATTTCAAATTTTT
TTCCTGCATGAAAGCCCTTCTATTTTGTCTCAGTTTACTTACTCTTATAC
TTTTCCTCCATGGTTATCATGAGCCCCTACATTGTTTAACATTTACTCCC
ACCAAAATGATTCACGGCTTTTATTATTTGTTGGTGGACTTTCTTCCTTC
ACGCTTCTCCTTGTATGAGGGTGAGCACTAGGAGGCCAGTGATGGCTCAT
ATTTTGTATGTTTCCTCAGTTTTTTCTTATTGTGTGGTGGGTCAGTTGTT
TTTCTAATTGATGAGATGAGTTGGGATCTTATTTGCTAGAAAGGAGCAAA
GCAAGAATCTTTTTGGTCTGAAGTTCCTCTTATTATCTACATAGTAACTT
GACTTCTAACTCGTACCTTTGCAACTTTTGTTGCCCTTCCATCTTGTGTA
TTTCTCTTATTTCATGATGTATATGTCCTTCTAACCTTACAATCACCGGA
GACAGTAGAAGATGATGATACTGGCTCCCAGAGAAAGTCAAGACGGAAAA
GTGTCGGTCGCCCGAGGAAATCCTCCGCCCTAGTTCCTGTCAGGCCCTGT
GTAACACCTGATCAAGTTGCAAAATTTGATGCTTATCTTGATAACTTGGA
TGACATGCTTGATATGCCTCATACTGAGACGACAGCATCGGATCACGCTA
CTTGTGCTAGTGCGTTGGATGCTGAATCGATAGAGTGTTGCAAGAAGAAG
CTTTCCTCCCTTCTTGCTCTAGATTTCCCTTCATTGGTCTCAAGCAATGA
TGTTGCAGAAGTTGCAATACTTGCATCCCAAATTCGTGAAGATCCCAATC
TCACTGTTGATCAACTGTTTAAGTTAAAATTGGTGGAACAAGTTCCCTTA
GCCGGTGAGGCCTTCCTTGAGGCCAAGGAGAGCATTGAAGAGGCAGACAA
ACGCATGGCTGACCTTCAGGCAAAGAAACTCGAAATTCCAACTCTGAAAA
AAGAGTACAACGAATTGAAGGAAAAACTGTCTGAGAGAGAAGCTGAAATG
GACATAAGTACTTTATCTATCAAAGAAATTGATGATCAAATTCGGCAACT
TCAATTGAAAAGGAACCGAATATCTAGTGCCCTTGAAACCATGCAGAAGG
ATAAAGATAAGCTCACTTCTGAGCTATCAAACGTTGCCAACTCAATTTCA
ACCATTGTTAATGAGATTCAGTCGGGTTTATCACAGAAATCAAAATGGGA
TCTGAAGAAAGCCAACAATGTCCGACGTGTAGCTGAGATACAAGAAAAGT
TCGTGACTTTAAGAGGGTTAACGTTTTAATGAAACAGTTGTGGAGTTTCT
GATTGTGTTAAGAACTCTTTAGGATAGTAACTATTTATGACAGTGATATG
TAATGTATCTATCTATGTTTCTAACTAATCAGTCTGCATCTATTGGAGGC
TTTGTGATATGTGGTAATGCCTGTAGTCAACTTAAAACTGCAAATCACCT
GTTTTATTTTAACT
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Coding sequence (CDS) from alignment at Chr07:36193521..36197934+

>Phvul.007G237900.1_Pv_G19833_v2.1 ID=Phvul.007G237900.1_Pv_G19833_v2.1; Name=Phvul.007G237900.1; organism=Phaseolus vulgaris; type=CDS; length=1254bp; location=Sequence derived from: Chr07:36193521..36197934+ (Phaseolus vulgaris
ATGGATCTCTCAGACACTCCAGAAGCTCTCATTCTTACTAGTCTTCAGGA
TGAAAAGGAACCCTTGAAGGATGACTCTGCAATTGGCAGCAATGCTTATA
AGGATGTGACAAAGGATAAAACCTTTGATCTTCAATCTGTGTCATCTTAC
TCTTCTGGCGAAGGTTTGCCATATGCACCTGATGGGTGGCCAAATGCTGG
TGATGTATGGGGCTGGAAAGTGGCGGGAAGGAGGTCCAAGGGTGGATATT
TTACTGACAGATCCCTTATCCCTCCAGCATCTCTTCAGAAGGGTACTCGC
AAGCTAGAGTTTCGGAGCAAGGCTGATATTAAGAGATATCTTCATTCAAA
TTTTCCTAACATGACACTTGAAGCATTCTTTGCTTTATTTAGCTGGATGA
TTCCCTCAGCTGAGGAAACCCCCACAAAAGTAGAAGATGATGATACTGGC
TCCCAGAGAAAGTCAAGACGGAAAAGTGTCGGTCGCCCGAGGAAATCCTC
CGCCCTAGTTCCTGTCAGGCCCTGTGTAACACCTGATCAAGTTGCAAAAT
TTGATGCTTATCTTGATAACTTGGATGACATGCTTGATATGCCTCATACT
GAGACGACAGCATCGGATCACGCTACTTGTGCTAGTGCGTTGGATGCTGA
ATCGATAGAGTGTTGCAAGAAGAAGCTTTCCTCCCTTCTTGCTCTAGATT
TCCCTTCATTGGTCTCAAGCAATGATGTTGCAGAAGTTGCAATACTTGCA
TCCCAAATTCGTGAAGATCCCAATCTCACTGTTGATCAACTGTTTAAGTT
AAAATTGGTGGAACAAGTTCCCTTAGCCGGTGAGGCCTTCCTTGAGGCCA
AGGAGAGCATTGAAGAGGCAGACAAACGCATGGCTGACCTTCAGGCAAAG
AAACTCGAAATTCCAACTCTGAAAAAAGAGTACAACGAATTGAAGGAAAA
ACTGTCTGAGAGAGAAGCTGAAATGGACATAAGTACTTTATCTATCAAAG
AAATTGATGATCAAATTCGGCAACTTCAATTGAAAAGGAACCGAATATCT
AGTGCCCTTGAAACCATGCAGAAGGATAAAGATAAGCTCACTTCTGAGCT
ATCAAACGTTGCCAACTCAATTTCAACCATTGTTAATGAGATTCAGTCGG
GTTTATCACAGAAATCAAAATGGGATCTGAAGAAAGCCAACAATGTCCGA
CGTGTAGCTGAGATACAAGAAAAGTTCGTGACTTTAAGAGGGTTAACGTT
TTAA
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