Phvul.007G267800.1

Transcript Overview
NamePhvul.007G267800.1
Unique NamePhvul.007G267800.1_Pv_G19833_v2.1
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr07supercontigChr07:38893531..38895587 -Phaseolus vulgaris G19833 genome v2.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phaseolus vulgaris G19833 genome v2.12019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.12019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot2019-10-18
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pvpvL032Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvpvL117Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pvpvL249Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pspvL236Pisum sativum Cameor genome v1aPisum sativum
pvvuR578Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuR587Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuR603Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuR627Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caipvL0312Cicer arietinum ICC 4958 genome v2Cicer arietinum
crpvL286Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL249Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
capvL365Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
capvL633Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccpvL0594Cajanus cajan Asha genome v1.0Cajanus cajan
anpvL0683Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0788Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1042Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1052Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1243Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1394Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
aspvL168Vigna angularis Jingnong 6 genome v1.1Vigna angularis
aspvL448Vigna angularis Jingnong 6 genome v1.1Vigna angularis
aspvL541Vigna angularis Jingnong 6 genome v1.1Vigna angularis
pvzwsR546Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvzwsR604Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvvfhR597Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR603Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR675Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR682Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvtifR593Vicia faba cv. Tiffany genome v1.0Vicia faba
pvtifR661Vicia faba cv. Tiffany genome v1.0Vicia faba
pvtifR670Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvrvR541Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvrvR551Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvrvR590Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvuaR509Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvuaR551Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvssR677Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR687Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR693Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR724Vicia sativa cv. Studenica genome v1.0Vicia sativa
canpvL233Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canpvL333Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canpvL615Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpvL102Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL428Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL519Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpvL081Cicer arietinum
carpvL240Cicer arietinum
carpvL367Cicer arietinum
carpvL614Cicer arietinum
ccapvL146Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL319Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL397Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL496Cajanus cajan cv. Asha genome v2.0Cajanus cajan
pvvumR643Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR715Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR729Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR731Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvvaR720Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvasR674Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvasR686Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvasR689Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvasR691Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR675Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvstR688Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvstR690Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvstR692Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvpvfR534Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR545Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR563Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR570Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvvunR533Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pvvunR541Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pvvunR555Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pvvunR578Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Vfaba.Hedin2.R1.3g037080.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
LR48_mrnaVigan02g013200Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vigst.06G144300.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
jg7544.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Cc_v2.0_03109.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vfaba.Hedin2.R1.1g060280.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vigun07g014600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vum_06G01031.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Cc_v2.0_09613.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vigan.06G157100.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vigun07g014600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
jg44100.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Ca_15198Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vigun11g121400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-XM_004497597.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vigst.08G242300.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
jg808.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
evm.model.Chr07.1711Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigun11g121400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vfaba.Tiffany.R1.6g012640.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Va08G057370.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vfaba.Hedin2.R1.6g017440.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vfaba.Tiffany.R1.3g029160.1Vicia faba cv. Tiffany genome v1.0Vicia faba
LR48_mrnaVigan08g131300Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-TanjilR_03137Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Va02G003620.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
PvulFLAVERTChr11.589Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Phvul.011G099300.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
PvulFLAVERTChr05.1000890Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Phvul.007G267800Phvul.007G267800_Pv_G19833_v2.1Phaseolus vulgarisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Phvul.007G267800.1Phvul.007G267800.1_Pv_G19833_v2.1-proteinPhaseolus vulgarispolypeptide
Phvul.007G267800.1_Pv_G19833_v2.1Phvul.007G267800.1_Pv_G19833_v2.1Phaseolus vulgarispolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.007G267800.1.v2.1.CDS.2Phvul.007G267800.1.v2.1.CDS.2_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.007G267800.1.v2.1.CDS.1Phvul.007G267800.1.v2.1.CDS.1_Pv_G19833_v2.1Phaseolus vulgarisCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.007G267800.1.v2.1.three_prime_UTR.1Phvul.007G267800.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgaristhree_prime_UTR


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.007G267800.1.v2.1.five_prime_UTR.1Phvul.007G267800.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgarisfive_prime_UTR


Homology
BLAST of Phvul.007G267800.1 vs. DB:Swiss
Match: PUB24_ARATH (E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana OX=3702 GN=PUB24 PE=1 SV=1)

HSP 1 Score: 321.627 bits (823), Expect = 3.168e-105
Identity = 179/441 (40.59%), Postives = 274/441 (62.13%), Query Frame = 1
Query:    4 EEIEVPQYFICPISLQIMRDPVTAITGITYDRESIEQWLFDNKNSTCPVSKQLLPRDSDLTPNHTLRRLIQAWCTQNAALGIVRIPTPKPPLHKIQVLKLLKDLHN--------HKSLVQLELLAAENERNKKCLLEAGVPRAMIIFIINCYRKAQIQ----KGLHEALSILQFVKIPKNEWPQLVKDHDQTLDSLTWILCHEEMENSIAVKSHVVLLLKKIINKGDTCHVLERLKPEFFEAMVKILRHGVT-----------------------------------QQGTXXXXXXXXXXXXXTRNRIMMVEAGVVHEVVEIELG-APEKRVTELTLAILFHLCCCANGRAKFLSHEGAIAVVTERILKVSAAVDDRAVFVLAMVAKFSGTKVVLQEMLKMGSMAKLCMVVQADRAKYLKDKAMEVLKEHSEVWTDSLCF 1182
            EEIE+P YFICPISL+IM+DPVT ++GITYDR++I +WL   K  +CPV+KQ LP DSDLTPNH LRRLIQ WC +N   G+VRI TP+ P  K+ V++ +K+L           ++L +LE+LA +   N++ + E GV +++I+F++ C  + +      KGL E+L +L  + IP N+   ++ ++D+ ++SLTW+L  E+  +    K++ ++LL+ +  +  + H++ERL PE F+ ++  L+  V                                    +Q  +AAL +LL  SS +RNR ++V+ G V E++E+E+    EKR+TEL L +L  LCCCANGRA+ L+H G IAVVT+R+L+VS A DDRA+ +L  V+KFS   +V++EM+ +G++ KLC V+  D    LK+KA E+LK+H + W    C 
Sbjct:    6 EEIEIPNYFICPISLEIMKDPVTTVSGITYDRQNIVKWL--EKVPSCPVTKQPLPLDSDLTPNHMLRRLIQHWCVENETRGVVRISTPRVPPGKLNVVEEIKNLKKFGQEALGREETLQKLEVLAMDGN-NRRLMCECGVHKSLILFVVKCTSEDEDGRRRIKGLDESLRLLHLIGIPSNDAKTILMENDRVMESLTWVLHQEDFLS----KAYTIVLLRNL-TEYTSSHIVERLNPEIFKGIIGFLKDVVNSVNRTSPTVRETVQSSSRPSLGKTEPSKLDHSLVIKQAVTAALMILLETSSWSRNRSLLVDLGAVSELIELEISYTGEKRITELMLGVLSRLCCCANGRAEILAHRGGIAVVTKRLLRVSPAADDRAISILTTVSKFSPENMVVEEMVNVGTVEKLCSVLGMDCGLNLKEKAKEILKDHFDEWKKFPCI 438          
BLAST of Phvul.007G267800.1 vs. DB:Swiss
Match: PUB23_ARATH (E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 1.152e-97
Identity = 178/411 (43.31%), Postives = 254/411 (61.80%), Query Frame = 1
Query:    4 EEIEVPQYFICPISLQIMRDPVTAITGITYDRESIEQWLFDNKNSTCPVSKQLLPRDSDLTPNHTLRRLIQAWCTQNAALGIVRIPTPKPPLHKIQVLKLLKDLHNH-----KSLVQLELLAAENERNKKCLLEAGVPRAMIIFIINCYRKAQIQKGLHEALSILQFVKIPKN--EWPQLVKDHDQTLDSLTWILCHEEMENSIAVKSHVVLLLKKIINKGDTCHVLERLKPEFFEAMVKILRHGVTQQGTXXXXXXXXXXXXXTRNRIMMVEAGVVHEVVEI---ELGAPEKRVTELTLAILFHLCCCANGRAKFLSHEGAIAVVTERILKVSAAVDDRAVFVLAMVAKFSGTKVVLQEMLKMGSMAKLCMVVQADRAKYLKDKAMEVLKEHSEVWTDSLCFPHSSFRAY 1206
            EEIE+P +F+CPISL+IM+DPV   TGITYDR+SIE+WLF  K ++CPV+KQ +  D+DLTPNHTLRRLIQ+WCT NA+ G+ RIPTP+PP+ K ++ KL++D  +      K L +L  + +EN  NK+CL  AGVP  +   + N      +     EAL++L  ++  +   +     K  +  + SLT I+     E+ +    +  LLLK I+   D    +  LKPE F  +V+IL   ++Q+ T AA+H+L++     RNR   VEAGV+  ++E+   E    E+R  E+ + +L  LC CA GRA+FL+H  AIAVV ++IL+VS    DRAV VL  V +F  T  +L EML++G +AKLC+V+Q       K+KA E+LK H+ VW DS C P +   AY
Sbjct:    8 EEIEIPPFFLCPISLEIMKDPVIVSTGITYDRDSIEKWLFAGKKNSCPVTKQDI-TDADLTPNHTLRRLIQSWCTLNASYGVERIPTPRPPICKSEIEKLIRDSASSHENQVKCLKRLRQIVSENATNKRCLEAAGVPEFLANIVSNDSENGSLT---DEALNLLYHLETSETVLKNLLNNKKDNNIVKSLTKIMQRGMYESRV----YATLLLKNILEVADPMQSMT-LKPEVFTEVVQILDDRISQKATKAAMHILVNICPWGRNRHKAVEAGVISVIIELLMDESFTSERRGPEMAMVVLDLLCQCAEGRAEFLNHGAAIAVVCKKILRVSQTASDRAVRVLLSVGRFCATPALLHEMLQLGVVAKLCLVLQVSCGGKTKEKAKELLKLHARVWKDSPCLPKNMILAY 409          
BLAST of Phvul.007G267800.1 vs. DB:Swiss
Match: PUB22_ARATH (E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana OX=3702 GN=PUB22 PE=1 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 7.560e-89
Identity = 170/437 (38.90%), Postives = 258/437 (59.04%), Query Frame = 1
Query:    4 EEIEVPQYFICPISLQIMRDPVTAITGITYDRESIEQWLFDNKNSTCPVSKQLLPRDSDLTPNHTLRRLIQAWCTQNAALGIVRIPTPKPPLHKIQVLKLLKD-----LHNHKSLVQLELLAAENERNKKCLLEAGVPRAMIIFIINCY--------------------------RKAQIQKGLHEALSILQFVKIPKNEWPQLVKDHDQT--LDSLTWILCHEEMENSIAVKSHVVLLLKKIINKGDTCHVLERLKPEFFEAMVKILRHGVTQQGTXXXXXXXXXXXXXTRNRIMMVEAGVVHEVVEI---ELGAPEKRVTELTLAILFHLCCCANGRAKFLSHEGAIAVVTERILKVSAAVDDRAVFVLAMVAKFSGTKVVLQEMLKMGSMAKLCMVVQADRAKYLKDKAMEVLKEHSEVWTDSLCFPHSSFRAY 1206
            +EIE+P +F+CPISL IM+DPV   TGITYDRESIE+WLF  K ++CPV+KQ++  ++DLTPNHTLRRLIQ+WCT NA+ GI RIPTPKPP+ K ++ KL+K+     L+  K L +L  + +EN  NK+CL  A VP  +   + N                            R    +  + EALS+L  +   +     L+ +   T  + +LT I+     E+    +++  LLLKK++   D   ++  L+ E F  +++IL   ++ + T +A+ +L+      RNR   VE G +  ++E+   +  + E+R +E+ + +L  LC CA GRA+FL+H  AIAVV+++IL+VS    +RAV VL  V +F  T  +LQEML++G +AKLC+V+Q       K+KA E+LK H+ VW +S C P + + +Y
Sbjct:    3 QEIEIPSFFLCPISLDIMKDPVIVSTGITYDRESIEKWLFSGKKNSCPVTKQVIT-ETDLTPNHTLRRLIQSWCTLNASYGIERIPTPKPPICKSEIEKLIKESSSSHLNQVKCLKRLRQIVSENTTNKRCLEAAEVPEFLANIVSNSVDTYNSPSSSLSSSNLNDMCQSNMLENRFDSSRSLMDEALSVLYHLDTSETALKSLLNNKKGTNLVKTLTKIMQRGIYES----RAYAALLLKKLLEVADPMQII-LLERELFGEVIQILHDQISHKATRSAMQILVITCPWGRNRHKAVEGGTISMIIELLMDDTFSSERRNSEMAMVVLDMLCQCAEGRAEFLNHGAAIAVVSKKILRVSQITSERAVRVLLSVGRFCATPSLLQEMLQLGVVAKLCLVLQVSCGNKTKEKAKELLKLHARVWRESPCVPRNLYDSY 433          
BLAST of Phvul.007G267800.1 vs. DB:Swiss
Match: PUB20_ARATH (U-box domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=PUB20 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.000e-36
Identity = 119/414 (28.74%), Postives = 204/414 (49.28%), Query Frame = 1
Query:    7 EIEVPQYFICPISLQIMRDPVTAITGITYDRESIEQWLFDNKNSTCPVSKQLLPRDSDLTPNHTLRRLIQAWCTQNAALGIVRIPTPKPPLHKIQVLKLLKDLHNH----------KSLVQLELLAAENERNKKCLLEAGVPRAMIIFIINCYRKAQIQKGLHEALSILQFVKIPKNEWPQLVKDHDQTLDSLTWILCHEEMENSIAVKSHVVLLLKKIINKGDTCHVLERLKPEFFEAMVKILRHGVTQQGTXXXXXXXXXXXXXTRNRIMMVEAGVVHEVVEIELGAPEKRVTELTLAILFHLCCCANGRAKFLSHEGAIAVVTERILKVSAAVDDRAVFVLAMVAKFSGTKVVLQEMLKMGSMAKLCMVVQADRAKYLKDKAMEVLKEHSEV----------WTDSLCFPH 1188
            EI +P  F CPIS ++M+DPV   +GITYDRE+IE+W F++   TCPV+  +L     + PNHT+RR+IQ WC  +   GI RIPTP+ P+   QV ++ + L             + + ++  L  E+ERN+KC+ E G    + +        A     L E +S+L ++ +P     Q       + + L  +L + +   +  +K  + L +  +       H L ++     EA +K +    T   +  ++H ++  +  T +R +  E  +V+  VE+ L   E  V E  L +L  +C    GR K   ++  I ++ ++ILK+S   D   V V+  V K SG    ++E L++G+  KL +++Q    +  K+K  E+LK  ++V          ++ S+ F H
Sbjct:   30 EITIPSQFQCPISYELMKDPVIIASGITYDRENIEKW-FESGYQTCPVTNTVLTSLEQI-PNHTIRRMIQGWCGSSLGGGIERIPTPRVPVTSHQVSEICERLSAATRRGDYAACMEMVTKMTRLGKESERNRKCVKENGAGLVLCVCFDAFSENANASLLLEETVSVLTWM-LPIGLEGQSKLTTTSSFNRLVELLRNGDQNAAFLIKELLELNVTHV-------HALTKING-VQEAFMKSINRDSTCVNSLISIHHMILTNQETVSRFL--ELDLVNITVEM-LVDSENSVCEKALTVLNVICETKEGREKVRRNKLVIPILVKKILKISEKKD--LVSVMWKVCK-SGDGSEVEEALRLGAFKKLVVMLQVGCGEGTKEKVTELLKMMNKVMKMNGFVDRSYSSSIEFKH 426          
BLAST of Phvul.007G267800.1 vs. DB:Swiss
Match: PUB21_ARATH (U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.292e-34
Identity = 113/400 (28.25%), Postives = 207/400 (51.75%), Query Frame = 1
Query:    7 EIEVPQYFICPISLQIMRDPVTAITGITYDRESIEQWLFDNKNSTCPVSKQLLPRDSDLTPNHTLRRLIQAWCTQNAALGIVRIPTPKPPLHKIQVLKLLKDLHNHKS----------LVQLELLAAENERNKKCLLEAGVPRAMIIFIINCYRK----AQIQKGLHEALSILQFVKIPKNEWPQLVKDHDQTLDSLTWILCHEEMENSI--AVKSHVVLLLKKIINKGDTCHVLERLKPEFFEAMVKILRHGVTQQGTXXXXXXXXXXXXXTRNRIM--MVEAGVVHEVVEIELGAPEKRVTELTLAILFHLCCCANGRAKFLSHEGAIAVVTERILKVSAAVDDRAVFVLAMVAKF--SGTKVVLQEMLKMGSMAKLCMVVQADRAKYLKDKAMEVLK 1146
            EI +P  F CPIS+ +M+DPV   TGITYDR SIE W+ ++ N TCPV+  +L    D  PNHT+R++IQ WC +  +  I RIPTP+ PL   +V ++ + L +             + +++ L  E+E+N+KC+ E  V   +     +C+ K     ++   L+E LS+L ++      +P  ++   + L S T   C   +  S   +V+ +   ++K+I++  +T      ++    EA+VK++R       ++ +  + +      +  I    +E G+V   VE+ + A E  V E  LA+L  +C   +GR +   +   + ++ ++I KVS      +   ++M+ K   +G  V +++ +++G+  K+ +V+Q    +  K+KA E+LK
Sbjct:   28 EITIPPEFQCPISIDLMKDPVIISTGITYDRVSIETWI-NSGNKTCPVTNTVL-TTFDQIPNHTIRKMIQGWCVEKGSPLIQRIPTPRVPLMPCEVYEISRKLSSATRRGDYEKCGVIIEKIKKLGDESEKNRKCVNENSVGWVL----CDCFDKFSGDEKLTFMLNEILSLLTWM------FPIGLEGISK-LASATSFRCVAGLLKSTDDSVRQNAAFIMKEILSLDETRVHSFAVENGVAEALVKLIRD-SVSSSSTKSSLIAIYQMVLQKPEIASEFLEIGLVSITVEMIVDA-ENSVCEKALAVLDAICETEHGREEVRKNALVMPLLVKKIAKVSELATRSS---MSMILKLWKTGNTVAVEDAVRLGAFQKVLLVLQVGYGEETKEKATELLK 409          
BLAST of Phvul.007G267800.1 vs. DB:Swiss
Match: PUB25_ARATH (U-box domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=PUB25 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.742e-33
Identity = 126/413 (30.51%), Postives = 204/413 (49.39%), Query Frame = 1
Query:   10 IEVPQYFICPISLQIMRDPVTAITGITYDRESIEQWLFDNKNSTCPVSKQLLPRDSDLTPNHTLRRLIQAWCTQNAALGIVRIPTPKPPLHKIQVLKLLKDL-----------HNHKSLVQLELLAAENERNKKCLLEAGVPRAMIIFIINCYRKAQIQKGLHEALSILQFVKIPK-NEWPQLVKDHDQTLDSLTWILCHEEME---NSIAVKSHVVLLLKKIINKGDTCHVLERLKPEFFEAMVKILRHGVTQQGTXXXXXXXXXXXXXTRN-RIMMVEAGVVHEVVEIELGAPEKRV-TELTLAILFHLCCCANGRAKFLSHEGAIAVVTERILKVSAAVDDRAV--FVLAMVAKFSGTKVVLQEMLKMGSMAKLCMVVQADRAKYLKDKAMEVLKEHSEVWTDSLCFPHS 1191
            I++P +F CPISL++M+DPVT  TG TYDR SIE W+    N+TCPV++  L  D  L PNHTLRRLIQ WC  N + G+ RIPTPK P     V  LL                  +L +L   A ++++N + L+ A     ++I I+  + +    + + E+L++L  + I + N++  +  D  + ++ LT +L    +E   N+ A+   V    K    KG   +         FE ++ +LR+ ++ +         L A  S ++ R + + AG   E++   L A   R  TE  LA +  LC    G A F  H   + ++ + IL+VS    DRA      A++A  +  +   +E    G + +L ++VQ++  +  K KA ++LK   + W D   F +S
Sbjct:   12 IQIPYHFRCPISLELMQDPVTVCTGQTYDRASIESWVSIGNNTTCPVTRAPL-SDFTLIPNHTLRRLIQEWCVANRSNGVERIPTPKQPADPTSVRALLSQASAITGTHVSVRSRAAALRRLRGFARDSDKN-RVLIAAHNATEILIKIL--FSETTSSELVSESLALLVMLPITEPNQFVSISSDPGR-VEFLTRLLFDSSIETRVNAAALIEIVSTGTKSADLKGSISN-----SESVFEGVLDLLRNPISSRRALKIGIKTLFALCSVKSTRHIAITAG-APEILIDRLAADFDRCDTERALATVELLCRTPEGCAAFGEHALTVPLLVKTILRVS----DRATEYAAGALLALCTAEERWREEAAGAGVVVQLLLMVQSECTERAKKKAQKLLKLLRDSWPDYNSFANS 409          
BLAST of Phvul.007G267800.1 vs. DB:Swiss
Match: PUB26_ARATH (U-box domain-containing protein 26 OS=Arabidopsis thaliana OX=3702 GN=PUB26 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.318e-28
Identity = 114/406 (28.08%), Postives = 200/406 (49.26%), Query Frame = 1
Query:   10 IEVPQYFICPISLQIMRDPVTAITGITYDRESIEQWLFDNKNSTCPVSKQLLPRDSDLTPNHTLRRLIQAWCTQNAALGIVRIPTPKPPLHKIQVLKLLKDL-----------HNHKSLVQLELLAAENERNKKCLLEAGVPRAMIIFII--NCYRKAQIQKGLHEALSILQFVKIPKNEWPQLVKDHDQTLDSLTWILCHEEMENSIAVKSHVVLLLKKIINKGDTCH--VLERLKPEFFEAMVKILRHGV-TQQGTXXXXXXXXXXXXXTRNRIMMVEAGVVHEVVEIELGAPEKRV-TELTLAILFHLCCCANGRAKFLSHEGAIAVVTERILKVSAAVDDRAV--FVLAMVAKFSGTKVVLQEMLKMGSMAKLCMVVQADRAKYLKDKAMEVLKEHSEVWTD 1170
            I++P +F CPISL +M DPVT  TG TYDR SI+ W+    N+TCPV++  L  D  L PNHTLRRLIQ WC  N + G+ RIPTPK P   I V  LL                  ++ +L  LA ++E+N + L+     R +++ I+  +    +   + + E+L++L  + + + E   +  D  + +  +T +L     ++SI ++ +   L++ ++    +    ++       FE ++ +L++ + +++     +  + +     + R + + AG    +++  L A   R  TE  LA +  LC    G A F  H   + ++ + IL+VS    DRA      A++A  +  +    E    G + +L ++VQ+D  +  K KA  +LK   + W D
Sbjct:   12 IQIPYHFRCPISLDLMSDPVTISTGQTYDRTSIDSWIA-MGNTTCPVTRVALS-DFTLIPNHTLRRLIQEWCVANRSNGVERIPTPKQPADPISVRSLLSQASAITGTHVSVRSRAAAIRRLRGLARDSEKN-RVLIAGHNAREILVRILFADIETTSLSSELVSESLALLVLLHMTETECEAVASDPSR-VGFMTRLL----FDSSIEIRVNAAALIEMVLTGAKSMDLKLIISGSDSIFEGVLDLLKNPISSRRALKIGIKAIFALCLVKQTRHLAISAGAPGILID-RLAADFDRCDTERGLATVELLCRLPEGCAAFGEHALTVPLMVKTILRVS----DRATEYAAGALLALCTAEERCRDEAAAAGLVTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPD 404          
BLAST of Phvul.007G267800.1 vs. DB:Swiss
Match: PUB29_ARATH (U-box domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=PUB29 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.171e-23
Identity = 112/430 (26.05%), Postives = 196/430 (45.58%), Query Frame = 1
Query:   10 IEVPQYFICPISLQIMRDPVTAITGITYDRESIEQWLFDNKNSTCPVSKQLLPRDSDLTPNHTLRRLIQAWCTQ-----NAALGIVRIPTPKPPLHKIQVLKLLKDLHNHKSLVQLELLAAENERNKKCLLEAGVPRAMIIFIINCYRKAQIQKGLHEALSILQFVKIPKNEWPQLVKDHD---------------------QTLDSLTWILCHEEMENSIAVKSHVVLLLKKIINKGDTCHVLERLKPEFFEAMVKILRHGVTQQGTXXXXXXXXXXXXXTRNRIMMVEAGVVHEVVEIELGAPEKR--VTELTLAILFHLCCCANGRAKFLSHEGAIAV--VTERILKVSAAVDDRAVFVL-AMVAKFSGTKVVLQEMLKMGSMAKLCMVVQADRAKYLKDKAMEVLKEHSEVWTDSLCFPHSSFRAY 1206
            I VP +F CPISL +MR PV+  TG+TYDR SI++WL D  N+TCP + QLL +  D  PN TL+RLI  W        N    ++  P+ +    K +V  LL+ L + ++L+++     +++ N++ L +      M++ II   +K +I+  +  A+ IL  +K+ +     L+  +D                     +++  L WI    + +  IA +  V+  + K I+      + E   P   EA +  L                ++ S S R R  ++ A  + ++ +I L        VTE +L +L  L     GR +    +    V  V +++LKVS    + AV +L  +   F   K V + + +   + KL +V+Q++ +  ++  A +++K         L F  S+  AY
Sbjct:   10 ITVPSFFKCPISLDVMRSPVSLCTGVTYDRASIQRWL-DGGNNTCPATMQLL-KTKDFVPNLTLQRLINIWSDSIGRRHNGDSPVLNPPSGREVPTKEEVNVLLERLMSLENLMKIVRFVKDSDSNREFLSKKMEFVPMLVDIIRT-KKTKIELVIM-AIRILDSIKVDRERLSNLMLANDGGDCLTAILLAIQRGNLESKIESVRVLDWISFDAKSKLMIAERDGVLTEMMKSIS------ITESSDPSLIEASLSFL----------------ITISKSKRVRSKLIAAKAITKIKDILLTETLTNVAVTEKSLKLLETLSSKREGRLEICGDDNGRCVEGVVKKLLKVSTTATEHAVTILWCLCYVFREDKTVEETVERSNGVTKLLVVIQSNCSAMVRQMAKDLIK--------VLKFNSSALAAY 405          
BLAST of Phvul.007G267800.1 vs. DB:Swiss
Match: PUB14_ARATH (U-box domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUB14 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.778e-18
Identity = 68/217 (31.34%), Postives = 103/217 (47.47%), Query Frame = 1
Query:   16 VPQYFICPISLQIMRDPVTAITGITYDRESIEQWLFDNKNSTCPVSKQLLPRDSDLTPNHTLRRLIQAWCTQNAALGIVRIP-------------TPKPPLHKIQVLKLLKDLHNHKSLVQ------LELLAAENERNKKCLLEAGV------------PRAM---IIFIINCYRKAQIQKGLHEALSILQFVKIPKNEWPQLVKDHDQTLDSLTWI 564
            +P+YF CPISL++M+DPV   TG TY+R SI++WL D  + TCP S++ L   + LTPN+ L+ LI  WC  N     + +P             +      +  VL LL+ L N  +  Q      L LLA  N  N+ C+ EAG             PR     +  ++N       +  + +A +I   V++ KN   +  ++   TL SL+ I
Sbjct:  248 IPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWL-DAGHKTCPKSQETLLH-AGLTPNYVLKSLIALWCESNG----IELPQNQGSCRTTKIGGSSSSDCDRTFVLSLLEKLANGTTEQQRAAAGELRLLAKRNVDNRVCIAEAGAIPLLVELLSSPDPRTQEHSVTALLNLSINEGNKGAIVDAGAITDIVEVLKNGSMEARENAAATLFSLSVI 458          
BLAST of Phvul.007G267800.1 vs. DB:Swiss
Match: PUB27_ARATH (U-box domain-containing protein 27 OS=Arabidopsis thaliana OX=3702 GN=PUB27 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.710e-18
Identity = 58/175 (33.14%), Postives = 92/175 (52.57%), Query Frame = 1
Query:   10 IEVPQYFICPISLQIMRDPVTAITGITYDRESIEQWLFDNKNSTCPVSKQLLPRDSDLTPNHTLRRLIQAW--------CTQNAALGIVRIPTPKPPLHKIQVLKLLKDLHNHKS-LVQLELLAAENERNKKCLLEAGVPRAMIIFIIN--CYRKAQIQKGL--HEALSILQFVK 495
            I VP +F CPISL +M+ PV+  TG+TYDR SI++WL D  N+TCP + Q+L ++ D  PN TL+RLI+ W        C ++A L     PT       I  +K+ K+  + +  L ++     E++ N+  L        +++ +IN   +      K L   EA+ IL  ++
Sbjct:    8 ITVPTFFRCPISLDVMKSPVSLCTGVTYDRASIQRWL-DGGNNTCPATMQIL-QNKDFIPNRTLQRLIEIWSDSVRRRTCVESAELA---APTRDEIADAIDRVKIEKEERDDREVLSKIVRFGRESDDNRGFLAGKDDFVKLLVDLINQVDFETTSAAKSLVVQEAVKILSTIR 177          
The following BLAST results are available for this feature:
BLAST of Phvul.007G267800.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
PUB24_ARATH3.168e-10540.59E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis t... [more]
PUB23_ARATH1.152e-9743.31E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis t... [more]
PUB22_ARATH7.560e-8938.90E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis t... [more]
PUB20_ARATH2.000e-3628.74U-box domain-containing protein 20 OS=Arabidopsis ... [more]
PUB21_ARATH2.292e-3428.25U-box domain-containing protein 21 OS=Arabidopsis ... [more]
PUB25_ARATH5.742e-3330.51U-box domain-containing protein 25 OS=Arabidopsis ... [more]
PUB26_ARATH2.318e-2828.08U-box domain-containing protein 26 OS=Arabidopsis ... [more]
PUB29_ARATH2.171e-2326.05U-box domain-containing protein 29 OS=Arabidopsis ... [more]
PUB14_ARATH1.778e-1831.34U-box domain-containing protein 14 OS=Arabidopsis ... [more]
PUB27_ARATH2.710e-1833.14U-box domain-containing protein 27 OS=Arabidopsis ... [more]
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InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003613U box domainSMARTSM00504Ubox_2coord: 9..74
e-value: 3.3E-30
score: 116.3
IPR003613U box domainPFAMPF04564U-boxcoord: 6..78
e-value: 3.6E-18
score: 65.5
IPR003613U box domainPROSITEPS51698U_BOXcoord: 5..81
score: 37.508
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..82
e-value: 1.4E-28
score: 100.9
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 91..386
e-value: 2.8E-7
score: 31.5
NoneNo IPR availableCDDcd16664RING-Ubox_PUBcoord: 10..53
e-value: 2.03349E-20
score: 81.5111
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 3..79
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 114..371

Sequences
The following sequences are available for this feature:

protein sequence of Phvul.007G267800.1_Pv_G19833_v2.1

>Phvul.007G267800.1_Pv_G19833_v2.1 ID=Phvul.007G267800.1_Pv_G19833_v2.1; Name=Phvul.007G267800.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=406bp
MEEIEVPQYFICPISLQIMRDPVTAITGITYDRESIEQWLFDNKNSTCPV
SKQLLPRDSDLTPNHTLRRLIQAWCTQNAALGIVRIPTPKPPLHKIQVLK
LLKDLHNHKSLVQLELLAAENERNKKCLLEAGVPRAMIIFIINCYRKAQI
QKGLHEALSILQFVKIPKNEWPQLVKDHDQTLDSLTWILCHEEMENSIAV
KSHVVLLLKKIINKGDTCHVLERLKPEFFEAMVKILRHGVTQQGTSAALH
VLLSASSSTRNRIMMVEAGVVHEVVEIELGAPEKRVTELTLAILFHLCCC
ANGRAKFLSHEGAIAVVTERILKVSAAVDDRAVFVLAMVAKFSGTKVVLQ
EMLKMGSMAKLCMVVQADRAKYLKDKAMEVLKEHSEVWTDSLCFPHSSFR
AYVRY*
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mRNA from alignment at Chr07:38893531..38895587-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.007G267800.1_Pv_G19833_v2.1 ID=Phvul.007G267800.1_Pv_G19833_v2.1; Name=Phvul.007G267800.1; organism=Phaseolus vulgaris; type=mRNA; length=2057bp; location=Sequence derived from: Chr07:38893531..38895587- (Phaseolus vulgaris
TTTTGGCTCCCATTCTTCGCCACTTTTTCTTGCTTTGACCACCGAAACTC TTAGAATGAAGACATTAAAACTTTGCCATAAATATTTATATGTCGCATAT GGACCCTTGACTTAAGACCAGCACAACAAGCTCTACAATATTATTCAACA CATAAAACTAAGCCGAATTCTCTTACCTTTTGCTAACACCTTCTTCTTCT AGTTCTCCTTTCACACACTCTCTCCTTCTCCCTTCACAATAAACACACCA TTTTCTGTTCTTGTGTTTTTGTTTTGACATGGAGGAAATTGAAGTGCCTC AATACTTCATTTGCCCCATATCCCTCCAAATCATGAGGGACCCCGTTACG GCCATAACGGGCATAACTTACGATCGAGAGAGCATTGAACAATGGCTATT CGATAACAAGAACAGCACATGCCCCGTGTCCAAACAACTCCTCCCGAGAG ACTCTGACCTAACCCCTAACCACACCCTTAGACGCTTGATCCAAGCCTGG TGCACCCAAAACGCTGCACTTGGCATCGTTCGCATTCCAACTCCCAAACC CCCTCTCCACAAAATCCAAGTCCTTAAACTCCTCAAAGACCTCCACAACC ACAAAAGCCTCGTGCAGTTGGAGCTTCTTGCTGCGGAGAACGAGAGGAAC AAAAAGTGCTTGCTTGAGGCTGGGGTTCCACGGGCAATGATCATCTTCAT CATCAACTGCTATAGAAAAGCTCAAATCCAAAAGGGTCTCCATGAAGCTC TTAGCATATTGCAGTTTGTCAAGATCCCCAAGAACGAAGTGAGTCTCACT AGTTAGTCACTGAATTTAACAATGAAACTTAATTGCCCTTTTCTTTTTCT TTCTAATATACCATTTGAAAGATATATAGTATTATAGTTGCTGTTTTATA TTTTTTTTTATCAGCAAATATATAAATATATATATAACTTTAAGAGTGAT CAGATTCATATAAATAAACACCATCGTTTTACCGACCACTCAAAACCTTA AATCTAAACCAAACATTCAATTAAGCAAGAAAAAATCTTATAATAGTACA ACACTCCACCTTAATAAAATCTTGTCCCTATGCTGTTTTCTAGTTAATAT AGACATCGTCATCATTATACAATAATATCAACAAAACAAAAAGGTTATTT TCCTTATATTTTGTATTCTTAATAGTGTGGAAGAAGCTAGACAACACAGC CAAAATAGTAGTCTCAAACAGCTTTTGAAAACCTTGTAAAAAATGACATA TGAACTGTTTTGTTACGATTCTAGTTTTTATCTTGTAGTGGCCGCAGCTT GTGAAGGACCACGACCAAACATTGGATTCTTTAACATGGATTCTGTGCCA CGAGGAAATGGAAAACTCCATTGCTGTGAAATCCCACGTGGTTCTGCTTC TAAAGAAGATCATCAACAAGGGCGACACGTGTCACGTTCTGGAGAGACTG AAACCCGAATTCTTCGAAGCAATGGTGAAGATTCTGAGACACGGGGTGAC CCAACAAGGAACGAGTGCAGCACTTCACGTTCTGTTAAGCGCTTCTTCTT CGACGCGAAACAGGATCATGATGGTGGAAGCGGGCGTGGTTCACGAAGTG GTGGAGATCGAACTGGGAGCGCCGGAGAAGAGAGTGACGGAACTGACGCT GGCTATATTGTTCCACCTGTGTTGTTGCGCCAACGGGAGAGCCAAGTTTT TGAGCCATGAAGGGGCGATCGCGGTGGTGACGGAGAGGATACTGAAGGTG TCGGCGGCGGTGGACGATAGGGCGGTGTTTGTTTTGGCGATGGTGGCGAA GTTTTCGGGGACGAAGGTGGTTTTGCAGGAGATGTTGAAGATGGGAAGCA TGGCGAAGCTTTGCATGGTGGTTCAGGCTGATAGGGCAAAGTATTTGAAG GACAAAGCCATGGAAGTTCTCAAGGAACACTCTGAGGTCTGGACTGACTC GCTTTGCTTTCCTCATTCGTCGTTTCGCGCCTACGTCCGCTACTGAAACG ACACGCCATTTGTGACATCTTCGTTACTTGGATGGTTCTGTCACTATATA CCATGCT
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Coding sequence (CDS) from alignment at Chr07:38893531..38895587-

>Phvul.007G267800.1_Pv_G19833_v2.1 ID=Phvul.007G267800.1_Pv_G19833_v2.1; Name=Phvul.007G267800.1; organism=Phaseolus vulgaris; type=CDS; length=1218bp; location=Sequence derived from: Chr07:38893531..38895587- (Phaseolus vulgaris
ATGGAGGAAATTGAAGTGCCTCAATACTTCATTTGCCCCATATCCCTCCA
AATCATGAGGGACCCCGTTACGGCCATAACGGGCATAACTTACGATCGAG
AGAGCATTGAACAATGGCTATTCGATAACAAGAACAGCACATGCCCCGTG
TCCAAACAACTCCTCCCGAGAGACTCTGACCTAACCCCTAACCACACCCT
TAGACGCTTGATCCAAGCCTGGTGCACCCAAAACGCTGCACTTGGCATCG
TTCGCATTCCAACTCCCAAACCCCCTCTCCACAAAATCCAAGTCCTTAAA
CTCCTCAAAGACCTCCACAACCACAAAAGCCTCGTGCAGTTGGAGCTTCT
TGCTGCGGAGAACGAGAGGAACAAAAAGTGCTTGCTTGAGGCTGGGGTTC
CACGGGCAATGATCATCTTCATCATCAACTGCTATAGAAAAGCTCAAATC
CAAAAGGGTCTCCATGAAGCTCTTAGCATATTGCAGTTTGTCAAGATCCC
CAAGAACGAATGGCCGCAGCTTGTGAAGGACCACGACCAAACATTGGATT
CTTTAACATGGATTCTGTGCCACGAGGAAATGGAAAACTCCATTGCTGTG
AAATCCCACGTGGTTCTGCTTCTAAAGAAGATCATCAACAAGGGCGACAC
GTGTCACGTTCTGGAGAGACTGAAACCCGAATTCTTCGAAGCAATGGTGA
AGATTCTGAGACACGGGGTGACCCAACAAGGAACGAGTGCAGCACTTCAC
GTTCTGTTAAGCGCTTCTTCTTCGACGCGAAACAGGATCATGATGGTGGA
AGCGGGCGTGGTTCACGAAGTGGTGGAGATCGAACTGGGAGCGCCGGAGA
AGAGAGTGACGGAACTGACGCTGGCTATATTGTTCCACCTGTGTTGTTGC
GCCAACGGGAGAGCCAAGTTTTTGAGCCATGAAGGGGCGATCGCGGTGGT
GACGGAGAGGATACTGAAGGTGTCGGCGGCGGTGGACGATAGGGCGGTGT
TTGTTTTGGCGATGGTGGCGAAGTTTTCGGGGACGAAGGTGGTTTTGCAG
GAGATGTTGAAGATGGGAAGCATGGCGAAGCTTTGCATGGTGGTTCAGGC
TGATAGGGCAAAGTATTTGAAGGACAAAGCCATGGAAGTTCTCAAGGAAC
ACTCTGAGGTCTGGACTGACTCGCTTTGCTTTCCTCATTCGTCGTTTCGC
GCCTACGTCCGCTACTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR003613Ubox_domain
IPR013083Znf_RING/FYVE/PHD
IPR011989ARM-like
IPR016024ARM-type_fold
Vocabulary: Biological Process
TermDefinition
GO:0016567protein ubiquitination
Vocabulary: Molecular Function
TermDefinition
GO:0004842ubiquitin-protein transferase activity