Phvul.009G001000.1

Transcript Overview
NamePhvul.009G001000.1
Unique NamePhvul.009G001000.1_Pv_G19833_v2.1
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr09supercontigChr09:314221..314770 +Phaseolus vulgaris G19833 genome v2.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phaseolus vulgaris G19833 genome v2.12019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.12019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot2019-10-18
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pvpvL122Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pspvL528Pisum sativum Cameor genome v1aPisum sativum
pvvuR729Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuR804Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caipvL0625Cicer arietinum ICC 4958 genome v2Cicer arietinum
capvL499Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccpvL1311Cajanus cajan Asha genome v1.0Cajanus cajan
anpvL0357Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0401Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0903Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL1253Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
aspvL631Vigna angularis Jingnong 6 genome v1.1Vigna angularis
pvzwsR761Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvzwsR772Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvvfhR863Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR878Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvtifR854Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvrvR720Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvrvR749Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvuaR698Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvssR933Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR978Vicia sativa cv. Studenica genome v1.0Vicia sativa
canpvL479Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpvL621Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpvL498Cicer arietinum
pvvumR876Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR887Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR931Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvvaR904Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR953Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvasR884Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvasR889Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR876Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvstR886Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvasR933Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR929Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvpvfR697Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR746Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvvunR675Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pvvunR749Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
Vigan.06G233100.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
jg13401.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigun11g186400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
rna-TanjilR_03425Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Vigun11g186400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vigan.02G013600.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
rna-TanjilR_17347Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-XM_004501049.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Va04G071610.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vigst.06G200900.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vum_02G00068.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vfaba.Hedin2.R1.6g048920.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
XM_058874166.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
rna-KK1_019574Cajanus cajan Asha genome v1.0Cajanus cajan
Vfaba.Tiffany.R1.4g180680.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vum_06G01646.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vigst.02G006700.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
rna-XM_022778000.1Vigna radiata cv. VC1973A genome v6.0Vigna radiata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
PvulFLAVERTChr09.132Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
PvulFLAVERTChr11.1000251Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Phvul.011G036500.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Phvul.009G001000Phvul.009G001000_Pv_G19833_v2.1Phaseolus vulgarisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Phvul.009G001000.1Phvul.009G001000.1_Pv_G19833_v2.1-proteinPhaseolus vulgarispolypeptide
Phvul.009G001000.1_Pv_G19833_v2.1Phvul.009G001000.1_Pv_G19833_v2.1Phaseolus vulgarispolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.009G001000.1.v2.1.five_prime_UTR.1Phvul.009G001000.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgarisfive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.009G001000.1.v2.1.CDS.1Phvul.009G001000.1.v2.1.CDS.1_Pv_G19833_v2.1Phaseolus vulgarisCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.009G001000.1.v2.1.three_prime_UTR.1Phvul.009G001000.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgaristhree_prime_UTR


Homology
BLAST of Phvul.009G001000.1 vs. DB:Swiss
Match: SAU21_ARATH (Auxin-responsive protein SAUR21 OS=Arabidopsis thaliana OX=3702 GN=SAUR21 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.267e-32
Identity = 47/82 (57.32%), Postives = 66/82 (80.49%), Query Frame = 1
Query:   46 ILKWQQHLHNRNHSNVPKGHVAVYVGEAQKKRFVVPISYLNHPSFLVLLNRAEEEFGYNHPMGGLTIPCKEEAFISLTSQLR 291
            +L  ++ L     S  PKG +AVYVGE+QKKR++VP+SYL+ PSF  LL+++EEEFG++HPMGGLTIPC E+ FI++TS+L+
Sbjct:    7 LLGAKKILSRSTASAAPKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEEEFGFDHPMGGLTIPCPEDTFINVTSRLQ 88          
BLAST of Phvul.009G001000.1 vs. DB:Swiss
Match: SAU24_ARATH (Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana OX=3702 GN=SAUR24 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.477e-31
Identity = 46/69 (66.67%), Postives = 61/69 (88.41%), Query Frame = 1
Query:   85 SNVPKGHVAVYVGEAQKKRFVVPISYLNHPSFLVLLNRAEEEFGYNHPMGGLTIPCKEEAFISLTSQLR 291
            S  PKG +AVYVGE+QKKR++VP+SYLN PSF  LL+++EEEFG++HPMGGLTIPC E+ FI++TS+L+
Sbjct:   22 SAAPKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSKSEEEFGFDHPMGGLTIPCPEDTFINVTSRLQ 90          
BLAST of Phvul.009G001000.1 vs. DB:Swiss
Match: SAU20_ARATH (Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana OX=3702 GN=SAUR20 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.871e-31
Identity = 46/69 (66.67%), Postives = 60/69 (86.96%), Query Frame = 1
Query:   85 SNVPKGHVAVYVGEAQKKRFVVPISYLNHPSFLVLLNRAEEEFGYNHPMGGLTIPCKEEAFISLTSQLR 291
            S  PKG +AVYVGE+QKKR++VPISYLN PSF  LL+++EEEFG++HPMGGLTIPC E+ FI++TS+ +
Sbjct:   22 SAAPKGFLAVYVGESQKKRYLVPISYLNQPSFQALLSKSEEEFGFDHPMGGLTIPCPEDTFINVTSRFQ 90          
BLAST of Phvul.009G001000.1 vs. DB:Swiss
Match: SAU22_ARATH (Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana OX=3702 GN=SAUR22 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.368e-31
Identity = 45/69 (65.22%), Postives = 61/69 (88.41%), Query Frame = 1
Query:   85 SNVPKGHVAVYVGEAQKKRFVVPISYLNHPSFLVLLNRAEEEFGYNHPMGGLTIPCKEEAFISLTSQLR 291
            S  PKG +AVYVGE+QKKR++VP+SYLN PSF  LL+++E+EFG++HPMGGLTIPC E+ FI++TS+L+
Sbjct:   22 SAAPKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEDEFGFDHPMGGLTIPCHEDTFINVTSRLQ 90          
BLAST of Phvul.009G001000.1 vs. DB:Swiss
Match: SAU23_ARATH (Auxin-responsive protein SAUR23 OS=Arabidopsis thaliana OX=3702 GN=SAUR23 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.805e-31
Identity = 46/68 (67.65%), Postives = 60/68 (88.24%), Query Frame = 1
Query:   85 SNVPKGHVAVYVGEAQKKRFVVPISYLNHPSFLVLLNRAEEEFGYNHPMGGLTIPCKEEAFISLTSQL 288
            S  PKG +AVYVGE+QKKR++VP+SYLN PSF  LL+++EEEFG++HPMGGLTIPC E+ FI++TS+L
Sbjct:   22 SAPPKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEEEFGFDHPMGGLTIPCPEDTFINVTSRL 89          
BLAST of Phvul.009G001000.1 vs. DB:Swiss
Match: SAU19_ARATH (Auxin-responsive protein SAUR19 OS=Arabidopsis thaliana OX=3702 GN=SAUR19 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.520e-30
Identity = 45/69 (65.22%), Postives = 60/69 (86.96%), Query Frame = 1
Query:   85 SNVPKGHVAVYVGEAQKKRFVVPISYLNHPSFLVLLNRAEEEFGYNHPMGGLTIPCKEEAFISLTSQLR 291
            S  PKG +AVYVGE+QKKR++VP+SYL+ PSF  LL+++EEEFG+ HPMGGLTIPC E+ FI++TS+L+
Sbjct:   22 SAAPKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEEEFGFAHPMGGLTIPCPEDTFINVTSRLQ 90          
BLAST of Phvul.009G001000.1 vs. DB:Swiss
Match: AX10A_SOYBN (Auxin-induced protein X10A OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.358e-29
Identity = 51/96 (53.12%), Postives = 67/96 (69.79%), Query Frame = 1
Query:    1 MGIRLPIFMAVHANKILKWQQHLHNRNHSNVPKGHVAVYVGEAQKKRFVVPISYLNHPSFLVLLNRAEEEFGYNHPMGGLTIPCKEEAFISLTSQL 288
            MG RLP    +    I   Q    +     VPKG++ VYVG+ + +RF++P+SYLN PSF  LLN+AEEEFGY+HPMGGLTIPCKE+ F+++TS L
Sbjct:    1 MGFRLP---GIRKTSIAANQA---SSKSVEVPKGYLVVYVGD-KMRRFLIPVSYLNQPSFQDLLNQAEEEFGYDHPMGGLTIPCKEDEFLTVTSHL 89          
BLAST of Phvul.009G001000.1 vs. DB:Swiss
Match: A10A5_SOYBN (Auxin-induced protein 10A5 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.365e-28
Identity = 44/67 (65.67%), Postives = 58/67 (86.57%), Query Frame = 1
Query:   88 NVPKGHVAVYVGEAQKKRFVVPISYLNHPSFLVLLNRAEEEFGYNHPMGGLTIPCKEEAFISLTSQL 288
            +VPKG+ AVYVG+ + +RF +P+SYLN PSF  LL++AEEEFGY+HPMGGLTIPCKEE F+++T+ L
Sbjct:   25 DVPKGYAAVYVGD-KMRRFTIPVSYLNEPSFQELLSQAEEEFGYDHPMGGLTIPCKEEEFLNVTAHL 90          
BLAST of Phvul.009G001000.1 vs. DB:Swiss
Match: SAU15_ARATH (Auxin-responsive protein SAUR15 OS=Arabidopsis thaliana OX=3702 GN=SAUR15 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.799e-28
Identity = 45/74 (60.81%), Postives = 59/74 (79.73%), Query Frame = 1
Query:   76 RNHSNVPKGHVAVYVGE--AQKKRFVVPISYLNHPSFLVLLNRAEEEFGYNHPMGGLTIPCKEEAFISLTSQLR 291
            R  S+ P+G +AVYVGE   +KKR+VVP+SYLN P F  LL+++EEEFGY+HPMGGLTIPC E  F ++TSQ++
Sbjct:   16 RESSSTPRGFMAVYVGENDQKKKRYVVPVSYLNQPLFQQLLSKSEEEFGYDHPMGGLTIPCHESLFFTVTSQIQ 89          
BLAST of Phvul.009G001000.1 vs. DB:Swiss
Match: AX15A_SOYBN (Auxin-induced protein 15A OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 5.913e-28
Identity = 45/68 (66.18%), Postives = 57/68 (83.82%), Query Frame = 1
Query:   85 SNVPKGHVAVYVGEAQKKRFVVPISYLNHPSFLVLLNRAEEEFGYNHPMGGLTIPCKEEAFISLTSQL 288
            ++ PKG++AVYVGE + KRFV+P+SYLN PSF  LL++AEEEFGY+HPMGGLTIPC E+ F  +TS L
Sbjct:   15 ADAPKGYLAVYVGE-KLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCSEDVFQCITSCL 81          
The following BLAST results are available for this feature:
BLAST of Phvul.009G001000.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
SAU21_ARATH6.267e-3257.32Auxin-responsive protein SAUR21 OS=Arabidopsis tha... [more]
SAU24_ARATH1.477e-3166.67Auxin-responsive protein SAUR24 OS=Arabidopsis tha... [more]
SAU20_ARATH1.871e-3166.67Auxin-responsive protein SAUR20 OS=Arabidopsis tha... [more]
SAU22_ARATH4.368e-3165.22Auxin-responsive protein SAUR22 OS=Arabidopsis tha... [more]
SAU23_ARATH8.805e-3167.65Auxin-responsive protein SAUR23 OS=Arabidopsis tha... [more]
SAU19_ARATH2.520e-3065.22Auxin-responsive protein SAUR19 OS=Arabidopsis tha... [more]
AX10A_SOYBN2.358e-2953.13Auxin-induced protein X10A OS=Glycine max OX=3847 ... [more]
A10A5_SOYBN2.365e-2865.67Auxin-induced protein 10A5 OS=Glycine max OX=3847 ... [more]
SAU15_ARATH4.799e-2860.81Auxin-responsive protein SAUR15 OS=Arabidopsis tha... [more]
AX15A_SOYBN5.913e-2866.18Auxin-induced protein 15A OS=Glycine max OX=3847 P... [more]
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InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003676Small auxin-up RNAPFAMPF02519Auxin_induciblecoord: 15..94
e-value: 2.9E-26
score: 91.5

Sequences
The following sequences are available for this feature:

protein sequence of Phvul.009G001000.1_Pv_G19833_v2.1

>Phvul.009G001000.1_Pv_G19833_v2.1 ID=Phvul.009G001000.1_Pv_G19833_v2.1; Name=Phvul.009G001000.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=100bp
MGIRLPIFMAVHANKILKWQQHLHNRNHSNVPKGHVAVYVGEAQKKRFVV
PISYLNHPSFLVLLNRAEEEFGYNHPMGGLTIPCKEEAFISLTSQLRSS*
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mRNA from alignment at Chr09:314221..314770+

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.009G001000.1_Pv_G19833_v2.1 ID=Phvul.009G001000.1_Pv_G19833_v2.1; Name=Phvul.009G001000.1; organism=Phaseolus vulgaris; type=mRNA; length=550bp; location=Sequence derived from: Chr09:314221..314770+ (Phaseolus vulgaris
TTCCTGCATGTTCCAACAATATTCACTTACCTTCCTATAATTCAACATCT TCTTCAAGTAACGTACTTGCATTATTCTCACTGTCTCTCTAGCTAGCTAG CTTCTCTTCAAACCCCATCATCATCAGATATATAACATATTATGGGTATT CGTCTTCCAATATTCATGGCTGTTCATGCGAACAAGATATTGAAGTGGCA GCAGCATCTCCATAACAGAAACCACTCCAATGTTCCAAAGGGTCACGTAG CAGTGTACGTGGGAGAGGCTCAAAAGAAGAGGTTTGTGGTTCCAATATCT TACTTGAACCACCCTTCCTTTCTTGTTTTGCTAAACCGAGCTGAGGAAGA GTTTGGCTACAATCATCCAATGGGAGGTCTCACAATCCCTTGCAAAGAAG AGGCATTCATCTCTCTCACCTCTCAATTACGTTCCTCCTGATCAACACTC TTTTCTGTCCCTACTCACCATTTTACTAACTCCATGCTGCTTCTTCAATG TTGCAGCTTTCCTTTTTGCATACCATACTTTTGTATATTATTTTCAGCCT
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Coding sequence (CDS) from alignment at Chr09:314221..314770+

>Phvul.009G001000.1_Pv_G19833_v2.1 ID=Phvul.009G001000.1_Pv_G19833_v2.1; Name=Phvul.009G001000.1; organism=Phaseolus vulgaris; type=CDS; length=300bp; location=Sequence derived from: Chr09:314221..314770+ (Phaseolus vulgaris
ATGGGTATTCGTCTTCCAATATTCATGGCTGTTCATGCGAACAAGATATT
GAAGTGGCAGCAGCATCTCCATAACAGAAACCACTCCAATGTTCCAAAGG
GTCACGTAGCAGTGTACGTGGGAGAGGCTCAAAAGAAGAGGTTTGTGGTT
CCAATATCTTACTTGAACCACCCTTCCTTTCTTGTTTTGCTAAACCGAGC
TGAGGAAGAGTTTGGCTACAATCATCCAATGGGAGGTCTCACAATCCCTT
GCAAAGAAGAGGCATTCATCTCTCTCACCTCTCAATTACGTTCCTCCTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR003676SAUR_fam
Vocabulary: Biological Process
TermDefinition
GO:0009733response to auxin