Phvul.009G001000.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Phvul.009G001000.1 vs. DB:Swiss
Match: SAU21_ARATH (Auxin-responsive protein SAUR21 OS=Arabidopsis thaliana OX=3702 GN=SAUR21 PE=2 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 6.267e-32 Identity = 47/82 (57.32%), Postives = 66/82 (80.49%), Query Frame = 1 Query: 46 ILKWQQHLHNRNHSNVPKGHVAVYVGEAQKKRFVVPISYLNHPSFLVLLNRAEEEFGYNHPMGGLTIPCKEEAFISLTSQLR 291 +L ++ L S PKG +AVYVGE+QKKR++VP+SYL+ PSF LL+++EEEFG++HPMGGLTIPC E+ FI++TS+L+ Sbjct: 7 LLGAKKILSRSTASAAPKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEEEFGFDHPMGGLTIPCPEDTFINVTSRLQ 88
BLAST of Phvul.009G001000.1 vs. DB:Swiss
Match: SAU24_ARATH (Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana OX=3702 GN=SAUR24 PE=2 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.477e-31 Identity = 46/69 (66.67%), Postives = 61/69 (88.41%), Query Frame = 1 Query: 85 SNVPKGHVAVYVGEAQKKRFVVPISYLNHPSFLVLLNRAEEEFGYNHPMGGLTIPCKEEAFISLTSQLR 291 S PKG +AVYVGE+QKKR++VP+SYLN PSF LL+++EEEFG++HPMGGLTIPC E+ FI++TS+L+ Sbjct: 22 SAAPKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSKSEEEFGFDHPMGGLTIPCPEDTFINVTSRLQ 90
BLAST of Phvul.009G001000.1 vs. DB:Swiss
Match: SAU20_ARATH (Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana OX=3702 GN=SAUR20 PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.871e-31 Identity = 46/69 (66.67%), Postives = 60/69 (86.96%), Query Frame = 1 Query: 85 SNVPKGHVAVYVGEAQKKRFVVPISYLNHPSFLVLLNRAEEEFGYNHPMGGLTIPCKEEAFISLTSQLR 291 S PKG +AVYVGE+QKKR++VPISYLN PSF LL+++EEEFG++HPMGGLTIPC E+ FI++TS+ + Sbjct: 22 SAAPKGFLAVYVGESQKKRYLVPISYLNQPSFQALLSKSEEEFGFDHPMGGLTIPCPEDTFINVTSRFQ 90
BLAST of Phvul.009G001000.1 vs. DB:Swiss
Match: SAU22_ARATH (Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana OX=3702 GN=SAUR22 PE=2 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 4.368e-31 Identity = 45/69 (65.22%), Postives = 61/69 (88.41%), Query Frame = 1 Query: 85 SNVPKGHVAVYVGEAQKKRFVVPISYLNHPSFLVLLNRAEEEFGYNHPMGGLTIPCKEEAFISLTSQLR 291 S PKG +AVYVGE+QKKR++VP+SYLN PSF LL+++E+EFG++HPMGGLTIPC E+ FI++TS+L+ Sbjct: 22 SAAPKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEDEFGFDHPMGGLTIPCHEDTFINVTSRLQ 90
BLAST of Phvul.009G001000.1 vs. DB:Swiss
Match: SAU23_ARATH (Auxin-responsive protein SAUR23 OS=Arabidopsis thaliana OX=3702 GN=SAUR23 PE=2 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 8.805e-31 Identity = 46/68 (67.65%), Postives = 60/68 (88.24%), Query Frame = 1 Query: 85 SNVPKGHVAVYVGEAQKKRFVVPISYLNHPSFLVLLNRAEEEFGYNHPMGGLTIPCKEEAFISLTSQL 288 S PKG +AVYVGE+QKKR++VP+SYLN PSF LL+++EEEFG++HPMGGLTIPC E+ FI++TS+L Sbjct: 22 SAPPKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEEEFGFDHPMGGLTIPCPEDTFINVTSRL 89
BLAST of Phvul.009G001000.1 vs. DB:Swiss
Match: SAU19_ARATH (Auxin-responsive protein SAUR19 OS=Arabidopsis thaliana OX=3702 GN=SAUR19 PE=2 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 2.520e-30 Identity = 45/69 (65.22%), Postives = 60/69 (86.96%), Query Frame = 1 Query: 85 SNVPKGHVAVYVGEAQKKRFVVPISYLNHPSFLVLLNRAEEEFGYNHPMGGLTIPCKEEAFISLTSQLR 291 S PKG +AVYVGE+QKKR++VP+SYL+ PSF LL+++EEEFG+ HPMGGLTIPC E+ FI++TS+L+ Sbjct: 22 SAAPKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEEEFGFAHPMGGLTIPCPEDTFINVTSRLQ 90
BLAST of Phvul.009G001000.1 vs. DB:Swiss
Match: AX10A_SOYBN (Auxin-induced protein X10A OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 2.358e-29 Identity = 51/96 (53.12%), Postives = 67/96 (69.79%), Query Frame = 1 Query: 1 MGIRLPIFMAVHANKILKWQQHLHNRNHSNVPKGHVAVYVGEAQKKRFVVPISYLNHPSFLVLLNRAEEEFGYNHPMGGLTIPCKEEAFISLTSQL 288 MG RLP + I Q + VPKG++ VYVG+ + +RF++P+SYLN PSF LLN+AEEEFGY+HPMGGLTIPCKE+ F+++TS L Sbjct: 1 MGFRLP---GIRKTSIAANQA---SSKSVEVPKGYLVVYVGD-KMRRFLIPVSYLNQPSFQDLLNQAEEEFGYDHPMGGLTIPCKEDEFLTVTSHL 89
BLAST of Phvul.009G001000.1 vs. DB:Swiss
Match: A10A5_SOYBN (Auxin-induced protein 10A5 OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 2.365e-28 Identity = 44/67 (65.67%), Postives = 58/67 (86.57%), Query Frame = 1 Query: 88 NVPKGHVAVYVGEAQKKRFVVPISYLNHPSFLVLLNRAEEEFGYNHPMGGLTIPCKEEAFISLTSQL 288 +VPKG+ AVYVG+ + +RF +P+SYLN PSF LL++AEEEFGY+HPMGGLTIPCKEE F+++T+ L Sbjct: 25 DVPKGYAAVYVGD-KMRRFTIPVSYLNEPSFQELLSQAEEEFGYDHPMGGLTIPCKEEEFLNVTAHL 90
BLAST of Phvul.009G001000.1 vs. DB:Swiss
Match: SAU15_ARATH (Auxin-responsive protein SAUR15 OS=Arabidopsis thaliana OX=3702 GN=SAUR15 PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 4.799e-28 Identity = 45/74 (60.81%), Postives = 59/74 (79.73%), Query Frame = 1 Query: 76 RNHSNVPKGHVAVYVGE--AQKKRFVVPISYLNHPSFLVLLNRAEEEFGYNHPMGGLTIPCKEEAFISLTSQLR 291 R S+ P+G +AVYVGE +KKR+VVP+SYLN P F LL+++EEEFGY+HPMGGLTIPC E F ++TSQ++ Sbjct: 16 RESSSTPRGFMAVYVGENDQKKKRYVVPVSYLNQPLFQQLLSKSEEEFGYDHPMGGLTIPCHESLFFTVTSQIQ 89
BLAST of Phvul.009G001000.1 vs. DB:Swiss
Match: AX15A_SOYBN (Auxin-induced protein 15A OS=Glycine max OX=3847 PE=2 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 5.913e-28 Identity = 45/68 (66.18%), Postives = 57/68 (83.82%), Query Frame = 1 Query: 85 SNVPKGHVAVYVGEAQKKRFVVPISYLNHPSFLVLLNRAEEEFGYNHPMGGLTIPCKEEAFISLTSQL 288 ++ PKG++AVYVGE + KRFV+P+SYLN PSF LL++AEEEFGY+HPMGGLTIPC E+ F +TS L Sbjct: 15 ADAPKGYLAVYVGE-KLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCSEDVFQCITSCL 81 The following BLAST results are available for this feature:
BLAST of Phvul.009G001000.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.009G001000.1_Pv_G19833_v2.1 >Phvul.009G001000.1_Pv_G19833_v2.1 ID=Phvul.009G001000.1_Pv_G19833_v2.1; Name=Phvul.009G001000.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=100bpback to top mRNA from alignment at Chr09:314221..314770+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Phvul.009G001000.1_Pv_G19833_v2.1 ID=Phvul.009G001000.1_Pv_G19833_v2.1; Name=Phvul.009G001000.1; organism=Phaseolus vulgaris; type=mRNA; length=550bp; location=Sequence derived from: Chr09:314221..314770+ (Phaseolus vulgarisback to top Coding sequence (CDS) from alignment at Chr09:314221..314770+ >Phvul.009G001000.1_Pv_G19833_v2.1 ID=Phvul.009G001000.1_Pv_G19833_v2.1; Name=Phvul.009G001000.1; organism=Phaseolus vulgaris; type=CDS; length=300bp; location=Sequence derived from: Chr09:314221..314770+ (Phaseolus vulgarisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|