|
|
Transcript Overview
| Name | Phvul.009G055800.1 |
|---|
| Unique Name | Phvul.009G055800.1_Pv_G19833_v2.1 |
|---|
| Type | mRNA |
|---|
| Organism | Phaseolus vulgaris (Common bean) |
|---|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Phvul.009G055800.1 | Phvul.009G055800.1_Pv_G19833_v2.1-protein | Phaseolus vulgaris | polypeptide |
| Phvul.009G055800.1_Pv_G19833_v2.1 | Phvul.009G055800.1_Pv_G19833_v2.1 | Phaseolus vulgaris | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Phvul.009G055800.1.v2.1.five_prime_UTR.1 | Phvul.009G055800.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1 | Phaseolus vulgaris | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Phvul.009G055800.1.v2.1.CDS.1 | Phvul.009G055800.1.v2.1.CDS.1_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Phvul.009G055800.1.v2.1.three_prime_UTR.1 | Phvul.009G055800.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1 | Phaseolus vulgaris | three_prime_UTR |
Homology
BLAST of Phvul.009G055800.1 vs. DB:Swiss
Match: ELO3L_ARATH (Elongation of fatty acids protein 3-like OS=Arabidopsis thaliana OX=3702 GN=HOS3 PE=2 SV=1) HSP 1 Score: 248.825 bits (634), Expect = 5.963e-81 Identity = 158/268 (58.96%), Postives = 193/268 (72.01%), Query Frame = 1
Query: 1 MESMKYWLIQHPSIVSFRWTPTQLYGATWSFLISAISLYV-IAAXXXXXXXXXXXXXXXXXXGPIPALHSLIMSLVSVAIFTGTLFSAEAEAXXXXXX-XXXXXXXXFEWLLCFPLGTRPSGRVFFWSYVFYLSRFLHLLRTXXXXXXXXXXXXXXXXXXXVLLVMSFLWLEFSQSLQVLAILFYTSAYSVVCAFRFWTELGLPSKTPLSFTANCQLALLGCNLACHVGVLSLHYLRGGCNGIGAWLFNSLLNAAFLVQFLKSYVKTH 798
+ S+ Y+L +HP IV FRW+ +Q +G+TWSFL ++ISLY+ +++ LL + R RS+PLG IP +HSL+MS++S IF G L SA AE RDTRWL R T +WLLCFPLGTRPSGRVFFWSYVFYL+RFLH+ RT F VLR RRL+ +LF NSV+ SFLWLEFSQS Q+LAIL T YSVV +RFWT GLP SF NCQL L+GCNL H GVL++H +GGCNGIGAW NS+LN A L+ FL YV+ H
Sbjct: 6 INSITYFLSEHPYIVGFRWSNSQSWGSTWSFLFTSISLYIAVSSSLHILLSAVRRSNRSVPLGHIPEIHSLLMSILSATIFAGILLSAAAEIRDTRWLWRRSKTATPLQWLLCFPLGTRPSGRVFFWSYVFYLTRFLHMFRTIFAVLRSRRLAVSQLFCNSVMAFTSFLWLEFSQSYQILAILSTTLVYSVVYGYRFWTGFGLPGSAFPSFVVNCQLVLVGCNLVSHAGVLTMHLFKGGCNGIGAWGLNSVLNGAILLLFLNFYVRMH 273
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR002076 | ELO family | PFAM | PF01151 | ELO | coord: 28..273
e-value: 3.3E-26
score: 92.3 |
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.009G055800.1_Pv_G19833_v2.1 >Phvul.009G055800.1_Pv_G19833_v2.1 ID=Phvul.009G055800.1_Pv_G19833_v2.1; Name=Phvul.009G055800.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=280bp
MESMKYWLIQHPSIVSFRWTPTQLYGATWSFLISAISLYVIAALTLHLLL
KLSRLRRSLPLGPIPALHSLIMSLVSVAIFTGTLFSAEAEARDTRWLWRR
SRTTSFEWLLCFPLGTRPSGRVFFWSYVFYLSRFLHLLRTFFVVLRDRRL
SFLRLFNNSVLLVMSFLWLEFSQSLQVLAILFYTSAYSVVCAFRFWTELG
LPSKTPLSFTANCQLALLGCNLACHVGVLSLHYLRGGCNGIGAWLFNSLL
NAAFLVQFLKSYVKTHSQRKSKSSCASSS* back to topmRNA from alignment at Chr09:10592746..10593829+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Phvul.009G055800.1_Pv_G19833_v2.1 ID=Phvul.009G055800.1_Pv_G19833_v2.1; Name=Phvul.009G055800.1; organism=Phaseolus vulgaris; type=mRNA; length=1084bp; location=Sequence derived from: Chr09:10592746..10593829+ (Phaseolus vulgaris
AATTCTTATTACCACCTAAAAATATTCTCCCACATGGTTTGCATTGCAAG
AATTTTACAATACTTAACTCACAAACAAACACATAGTTTGTATGGTATAT
TGTTATCATTATGGAGAGCATGAAATATTGGCTAATACAACACCCTTCCA
TTGTCTCCTTCCGCTGGACTCCCACCCAATTATACGGCGCCACCTGGTCC
TTCCTCATTTCCGCCATCTCCTTATACGTAATCGCCGCCCTAACTCTCCA
CCTCCTCCTCAAACTCTCCCGTCTCCGCCGTTCGCTTCCGTTAGGACCCA
TCCCCGCCCTCCACAGCCTCATCATGTCGTTAGTCTCCGTCGCGATATTC
ACCGGCACGCTCTTCTCCGCCGAAGCCGAAGCCCGCGACACGCGGTGGCT
GTGGCGGCGCAGCAGAACCACCTCTTTCGAGTGGCTCCTCTGTTTTCCTC
TCGGTACTCGTCCGTCCGGTCGTGTCTTCTTCTGGTCCTACGTCTTTTAT
CTCTCACGCTTTCTCCACCTGCTGCGCACCTTCTTCGTGGTTTTGCGTGA
CCGAAGGTTGTCGTTTTTGCGACTGTTTAACAACTCCGTACTCCTCGTCA
TGTCGTTTCTGTGGCTGGAGTTTTCGCAGTCGCTTCAGGTCCTGGCCATT
CTGTTCTACACGTCGGCTTATTCCGTCGTTTGTGCGTTCCGGTTCTGGAC
AGAACTCGGGTTGCCTAGCAAAACGCCGTTGTCGTTCACCGCGAATTGCC
AGCTGGCACTGTTGGGATGTAATTTGGCGTGCCACGTTGGCGTTCTCTCG
TTGCATTACTTGAGAGGAGGGTGTAACGGAATCGGAGCTTGGCTTTTCAA
CTCTCTGTTAAACGCTGCTTTTCTCGTTCAGTTCTTGAAATCCTACGTGA
AAACGCATTCACAAAGGAAAAGTAAAAGTAGTTGTGCTTCCTCTTCTTAG
CTTAACCTAACTCTACGGTATTGAAGTTTTTGTCATTTAAGGACAAAAAG
GTTCATTTTATCTTTTATTGGGTTTTTCATCAAATGTAATGACTCCGTAT
GTATGAATCCAGAGCTCGTAAAGCTTTCATTGAC back to topCoding sequence (CDS) from alignment at Chr09:10592746..10593829+ >Phvul.009G055800.1_Pv_G19833_v2.1 ID=Phvul.009G055800.1_Pv_G19833_v2.1; Name=Phvul.009G055800.1; organism=Phaseolus vulgaris; type=CDS; length=840bp; location=Sequence derived from: Chr09:10592746..10593829+ (Phaseolus vulgaris
ATGGAGAGCATGAAATATTGGCTAATACAACACCCTTCCATTGTCTCCTT
CCGCTGGACTCCCACCCAATTATACGGCGCCACCTGGTCCTTCCTCATTT
CCGCCATCTCCTTATACGTAATCGCCGCCCTAACTCTCCACCTCCTCCTC
AAACTCTCCCGTCTCCGCCGTTCGCTTCCGTTAGGACCCATCCCCGCCCT
CCACAGCCTCATCATGTCGTTAGTCTCCGTCGCGATATTCACCGGCACGC
TCTTCTCCGCCGAAGCCGAAGCCCGCGACACGCGGTGGCTGTGGCGGCGC
AGCAGAACCACCTCTTTCGAGTGGCTCCTCTGTTTTCCTCTCGGTACTCG
TCCGTCCGGTCGTGTCTTCTTCTGGTCCTACGTCTTTTATCTCTCACGCT
TTCTCCACCTGCTGCGCACCTTCTTCGTGGTTTTGCGTGACCGAAGGTTG
TCGTTTTTGCGACTGTTTAACAACTCCGTACTCCTCGTCATGTCGTTTCT
GTGGCTGGAGTTTTCGCAGTCGCTTCAGGTCCTGGCCATTCTGTTCTACA
CGTCGGCTTATTCCGTCGTTTGTGCGTTCCGGTTCTGGACAGAACTCGGG
TTGCCTAGCAAAACGCCGTTGTCGTTCACCGCGAATTGCCAGCTGGCACT
GTTGGGATGTAATTTGGCGTGCCACGTTGGCGTTCTCTCGTTGCATTACT
TGAGAGGAGGGTGTAACGGAATCGGAGCTTGGCTTTTCAACTCTCTGTTA
AACGCTGCTTTTCTCGTTCAGTTCTTGAAATCCTACGTGAAAACGCATTC
ACAAAGGAAAAGTAAAAGTAGTTGTGCTTCCTCTTCTTAG back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002076 | ELO_fam |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
|
