Phvul.009G071500.1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Phvul.009G071500.1 vs. DB:Swiss
Match: IFRD1_PIG (Interferon-related developmental regulator 1 OS=Sus scrofa OX=9823 GN=IFRD1 PE=2 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 7.525e-29 Identity = 107/381 (28.08%), Postives = 169/381 (44.36%), Query Frame = 1
Query: 172 EKRGSTREKALSSIIDAFNSNMQHEFVEKKFATLLHQCLASIKKGTKKASAKEIALASHAIGCLALTVGCGDNAREIFE---ESIRHLDESLTSRIDVSKTPSLLECLAIITFIGGIDQEETERSMDMMWRIINPKL----GSNVVAVKPSASLIANVVSAWSFLLSTVSNLKLNSKNWQNSISYLSSLLDKEDRSVRIAAGEALALIFEIGVIDKFSAQPDSASDTTQEGSKPLESYIFLQGLKGKVLNQCKKLSMEAGGKGSAKKDLNSQRNLFRDILDFFEYGYYPDISMKIGGDSLQTSSWSEMIQLNFIKHFLGGGFVKHMQENEFLHDVFGFSPK--RKYLNNNEHKMSGGEKRMFKSPNSVLNKARTQLLNKQR 1287
+K TR+ AL I +A S M +EF+ ++ TL +KKG ALAS L + +G G + E+ + ++ + T+ I +T + C + FI D E ++ + I SNV+ P+ +L + + AW+ LL T+ L K + + L SLL +D ++RIAAGE+LAL+FE+ ++ +ES F + ++ L Q + G K AK D QR++FRDIL E +P ++K G + + W + + K LG G H+Q NEFL +VF P K+S E+ ++ NS KART+ +K R
Sbjct: 92 DKSAKTRQAALEGIKNALASRMLYEFILERRMTLTDSIERCLKKGKSDEQRAAAALAS----VLCIQLGPGIESEEVLKTLGPVLKKIICDGTASIQARQTCAT--CFGVCCFIATDDITELYSTLQCLENIFTKSYLKEKDSNVICSTPNTALHISSLLAWTLLL-TICPLSEVKKKLEMHVHKLPSLLSSDDVNMRIAAGESLALLFEL--------------------ARGMESDFFYEDMES--LTQMLRALATDGNKHRAKVDKRKQRSVFRDILRAVEERDFPTETVKFGPERMYIDCWVKKRTYDTFKEILGSGMQYHLQSNEFLRNVFELGPPVMLDAATLKTMKISRFERHLY---NSAAFKARTKARSKCR 440
BLAST of Phvul.009G071500.1 vs. DB:Swiss
Match: IFRD1_HUMAN (Interferon-related developmental regulator 1 OS=Homo sapiens OX=9606 GN=IFRD1 PE=1 SV=4) HSP 1 Score: 112.079 bits (279), Expect = 1.399e-25 Identity = 102/379 (26.91%), Postives = 163/379 (43.01%), Query Frame = 1
Query: 172 EKRGSTREKALSSIIDAFNSNMQHEFVEKKFATLLHQCLASIKKGTKKASAKEIALASHAIGCLALTVGCGDNAREIFEESIRHLDESLTS-RIDVSKTPSLLECLAIITFIGGIDQEETERSMDMMWRIINPKL----GSNVVAVKPSASLIANVVSAWSFLLSTVSNLKLNSKNWQNSISYLSSLLDKEDRSVRIAAGEALALIFEIGVIDKFSAQPDSASDTTQEGSKPLESYIFLQGLKGKVLNQCKKLSMEAGGKGSAKKDLNSQRNLFRDILDFFEYGYYPDISMKIGGDSLQTSSWSEMIQLNFIKHFLGGGFVKHMQENEFLHDVFGFSPK--RKYLNNNEHKMSGGEKRMFKSPNSVLNKARTQLLNKQR 1287
+K TR+ AL I +A S M +EF+ ++ TL +KKG ALAS L + +G G + EI + L + + + + C + FI D E +++ + I + V+ P+ L + + AW+ LL T+ + K + L SLL +D ++RIAAGE+LAL+FE+ ++ +ES F + ++ L Q + G K AK D QR++FRD+L E +P ++K G + + W + + K LG G H+Q NEFL +VF P K+S E+ ++ NS KART+ +K R
Sbjct: 93 DKSAKTRQAALEGIKNALASKMLYEFILERRMTLTDSIERCLKKGKSDEQRAAAALAS----VLCIQLGPGIESEEILKTLGPILKKIICDGSASMQARQTCATCFGVCCFIATDDITELYSTLECLENIFTKSYLKEKDTTVICSTPNTVLHISSLLAWTLLL-TICPINEVKKKLEMHFHKLPSLLSCDDVNMRIAAGESLALLFEL--------------------ARGIESDFFYEDMES--LTQMLRALATDGNKHRAKVDKRKQRSVFRDVLRAVEERDFPTETIKFGPERMYIDCWVKKHTYDTFKEVLGSGMQYHLQSNEFLRNVFELGPPVMLDAATLKTMKISRFERHLY---NSAAFKARTKARSKCR 441
BLAST of Phvul.009G071500.1 vs. DB:Swiss
Match: IFRD1_MOUSE (Interferon-related developmental regulator 1 OS=Mus musculus OX=10090 GN=Ifrd1 PE=1 SV=2) HSP 1 Score: 111.694 bits (278), Expect = 1.677e-25 Identity = 102/379 (26.91%), Postives = 165/379 (43.54%), Query Frame = 1
Query: 172 EKRGSTREKALSSIIDAFNSNMQHEFVEKKFATLLHQCLASIKKGTKKASAKEIALASHAIGCLALTVGCGDNAREIFEESIRHLDESLTS-RIDVSKTPSLLECLAIITFIGGIDQEETERSMDMMWRIINPKL----GSNVVAVKPSASLIANVVSAWSFLLSTVSNLKLNSKNWQNSISYLSSLLDKEDRSVRIAAGEALALIFEIGVIDKFSAQPDSASDTTQEGSKPLESYIFLQGLKGKVLNQCKKLSMEAGGKGSAKKDLNSQRNLFRDILDFFEYGYYPDISMKIGGDSLQTSSWSEMIQLNFIKHFLGGGFVKHMQENEFLHDVFGFSPK--RKYLNNNEHKMSGGEKRMFKSPNSVLNKARTQLLNKQR 1287
+K TR+ AL + +A +S + +EFV ++ TL SI++ KK + E A+ L + +G G + EI + L + + + + C + FI D E +++ I +NV P+ L + + AW+ LL T+ + K + L SLL +D ++RIAAGE+LAL+FE+ ++ +ES F + + L Q + G K AK D QR++FRD+L E +P ++K G + + SW + + K LG G H+Q NEFL +VF P K+S E+ ++ NS KART+ +K R
Sbjct: 91 DKSAKTRQAALEGLKNALSSKVLYEFVLERRMTLTD----SIERCLKKGKSDEQRAAAAVASVLCIQLGPGFESEEILKTLGPILKKIICDGAASIQARQTCATCFGVCCFIATDDITELYSTLECFENIFTKSYLKEKDTNVTCSTPNTVLHISSLLAWTLLL-TICPINEVKKKLELHFHKLPSLLSCDDVNMRIAAGESLALLFEL--------------------ARGMESDFFYEDMDS--LTQMLRALATDGNKHRAKVDKRKQRSVFRDVLRAVEERDFPTETVKFGPERMYIDSWVKKHTYDTFKEVLGSGMQYHLQTNEFLRNVFELGPPVMLDAATLKTMKISRFERHLY---NSAAFKARTKARSKCR 439
BLAST of Phvul.009G071500.1 vs. DB:Swiss
Match: IFRD1_RAT (Interferon-related developmental regulator 1 OS=Rattus norvegicus OX=10116 GN=Ifrd1 PE=2 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 2.507e-25 Identity = 104/381 (27.30%), Postives = 167/381 (43.83%), Query Frame = 1
Query: 172 EKRGSTREKALSSIIDAFNSNMQHEFVEKKFATLLHQCLASIKKGTKKASAKEIALASHAIGCLALTVGCGDNAREIFE---ESIRHLDESLTSRIDVSKTPSLLECLAIITFIGGIDQEETERSMDMMWRIINPKL----GSNVVAVKPSASLIANVVSAWSFLLSTVSNLKLNSKNWQNSISYLSSLLDKEDRSVRIAAGEALALIFEIGVIDKFSAQPDSASDTTQEGSKPLESYIFLQGLKGKVLNQCKKLSMEAGGKGSAKKDLNSQRNLFRDILDFFEYGYYPDISMKIGGDSLQTSSWSEMIQLNFIKHFLGGGFVKHMQENEFLHDVFGFSPK--RKYLNNNEHKMSGGEKRMFKSPNSVLNKARTQLLNKQR 1287
+K TR+ AL + +A +S + +EFV ++ TL +KKG ALAS L + +G G + EI + ++ + T+ I +T + C + FI D E +++ + I +NV P+ L + + AW+ LL T+ + K + L SLL +D ++RIAAGE+LAL+FE+ ++ +ES F + + L Q + G K AK D QR++FRD+L E +P ++K G + + SW + + K LG G H+Q NEFL +VF P K+ E+ ++ NS KART+ +K R
Sbjct: 91 DKSAKTRQAALEGVKNALSSKVLYEFVLERRMTLTDSIERCLKKGKSDGQRAAAALAS----VLCIQLGPGLESEEILKTLGPILKKIICDGTASIQARQTCA--TCFGVCCFIATDDITELYSTLECLEGIFTKSYLKEKDTNVPCSTPNTVLHISSLLAWTLLL-TICPISEVKKKLELHFHKLPSLLSCDDVNMRIAAGESLALLFEL--------------------ARGMESDFFYEDMDS--LTQMLRALATDGNKHRAKVDKRKQRSVFRDVLRAVEERDFPTETVKFGPERMYIDSWVKKHTYDTFKEALGSGMQYHLQTNEFLRNVFELGPPVMLDAATLKTMKIPRFERHLY---NSAAFKARTKARSKCR 439
BLAST of Phvul.009G071500.1 vs. DB:Swiss
Match: IFRD2_HUMAN (Interferon-related developmental regulator 2 OS=Homo sapiens OX=9606 GN=IFRD2 PE=1 SV=3) HSP 1 Score: 63.1586 bits (152), Expect = 1.966e-9 Identity = 45/158 (28.48%), Postives = 71/158 (44.94%), Query Frame = 1
Query: 697 ISYLSSLLDKEDRSVRIAAGEALALIFEIGVIDKFSAQPDSASDTTQEGSKPLESYIFLQGLKGKVLNQCKKLSMEAGGKGSAKKDLNSQRNLFRDILDFFEYGYYPDISMKIGGDSLQTSSWSEMIQLNFIKHFLGGGFVKHMQENEFLHDVFGFSP 1170
+ L LL E ++RIAAGE +AL+FE+ ++ LE + ++ + + + L+ ++ K AK D QR+ FR +L E G + ++ G + L SW+ K LG G H+Q NE L D+FG P
Sbjct: 326 LPRLPQLLSSESVNLRIAAGETIALLFEL--------------------ARDLEEEFVYEDMEA-LCSVLRTLATDSN-KYRAKADRRRQRSTFRAVLHSVEGGECEEEIVRFGFEVLYMDSWARHRIYAAFKEVLGSGMHHHLQNNELLRDIFGLGP 461 The following BLAST results are available for this feature:
BLAST of Phvul.009G071500.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot) Total hits: 5
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.009G071500.1_Pv_G19833_v2.1 >Phvul.009G071500.1_Pv_G19833_v2.1 ID=Phvul.009G071500.1_Pv_G19833_v2.1; Name=Phvul.009G071500.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=450bpback to top mRNA from alignment at Chr09:12355649..12361794+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Phvul.009G071500.1_Pv_G19833_v2.1 ID=Phvul.009G071500.1_Pv_G19833_v2.1; Name=Phvul.009G071500.1; organism=Phaseolus vulgaris; type=mRNA; length=6146bp; location=Sequence derived from: Chr09:12355649..12361794+ (Phaseolus vulgarisback to top Coding sequence (CDS) from alignment at Chr09:12355649..12361794+ >Phvul.009G071500.1_Pv_G19833_v2.1 ID=Phvul.009G071500.1_Pv_G19833_v2.1; Name=Phvul.009G071500.1; organism=Phaseolus vulgaris; type=CDS; length=1350bp; location=Sequence derived from: Chr09:12355649..12361794+ (Phaseolus vulgarisback to top |