Phvul.009G101500.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Phvul.009G101500.1 vs. DB:Swiss
Match: AFR_ARATH (F-box protein AFR OS=Arabidopsis thaliana OX=3702 GN=AFR PE=1 SV=2) HSP 1 Score: 301.597 bits (771), Expect = 1.639e-99 Identity = 166/358 (46.37%), Postives = 221/358 (61.73%), Query Frame = 1 Query: 13 EGEKEHKDLIPGLPNEIAELCLLHVPYPYQALSRSVSSTWNRAITHPSFIFSKKTLS--HPNLFVLAFHSQTGKLQWQALDPSSARWFLLPQMPSPGD--ACPQRLACAALPRQGKLFVVNGAET----LAYRAATNQWSAAG-GPGRRGFVAAEGVEGRIVAVG--RGGTG-------VYDPESDTWXXXXXXXXXXXXXXVVAAGGRVYVTEGWWWPFMFRPRGWVYEVERDTWREMGIGMREGWSGVGVAAGGRVFMIAEYGDSPVKVYDEERDTWRVVGGGRFPREVMKRPFCGTGLDDRIYVACRGLNVAXXXXXXXXXXXXXXXXXXXXTWQVVEAPRAFREFSPCSCQVLY 1032 E + + LI GLPN+IAELCLL +PYPY AL RSVSS+WN+ IT+P F+FSK++LS P LFV AF+ T ++QWQ+LD +S RWF+LP MP+ + P L+CA++PRQGKLFV+ G + + Y A TN+WS R + + V G+I+AVG GG G YDP++DTW L L +Y+ G + VTEGW WPFMF P G VY+ + TWREM GM+EGW+GV V R+F+I+E+GD P+KVY + DTWR V G + E M+RPF TG DDR++V G+NVA G V W++V +P++ +FSP SC VLY Sbjct: 20 ETRTKSQPLISGLPNDIAELCLLRLPYPYHALYRSVSSSWNKTITNPRFLFSKQSLSISSPYLFVFAFNKSTARIQWQSLDLASGRWFVLPPMPNSFTKISSPHALSCASMPRQGKLFVLGGGDVNRSAVVYTALTNRWSCISPMMSPRTYFVSGNVNGKIMAVGGSVGGNGEATTEVESYDPDNDTWTVVKKLPMVLAKYDSAVIGKEMCVTEGWAWPFMFPPMGQVYDSDEGTWREMSGGMKEGWTGVSVVIRDRLFVISEHGDFPMKVYCSDDDTWRYVSGEKLQGEKMRRPFAVTGADDRVFVVASGINVAEGRVSEGQNGDFSVE------WRMVSSPKSSIQFSPASCHVLY 371
BLAST of Phvul.009G101500.1 vs. DB:Swiss
Match: FBK17_ARATH (F-box/kelch-repeat protein At1g30090 OS=Arabidopsis thaliana OX=3702 GN=At1g30090 PE=2 SV=1) HSP 1 Score: 191.045 bits (484), Expect = 4.265e-56 Identity = 114/354 (32.20%), Postives = 170/354 (48.02%), Query Frame = 1 Query: 37 LIPGLPNEIAELCLLHVPYPYQALSRSVSSTWNRAITHPSFIFSKKT---LSHPNLFVLAFHSQTGKLQWQALDPSSARWFLLPQMPSPGDACPQRLACAALPRQGKLFVVNGAET---------LAYRAATNQWSAAGGP-GRRGFVAAEGVEGRIVAVGRGGTGVY--------DPESDTWXXXXXXXXXXXXXXVVAAGGRVYVTEGWWWPFMFRPRGWVYEVERDTWREMGIGMREGWSGVGVAAGGRVFMIAEYGDSPVKVYDEERDTWRVVGGGRFPREVMKRPFCGTGLDDRIYVACRGLNVAXXXXXXXXXXXXXXXXXXXXTWQVVEAPRAFREFSPCSCQVLYA 1035 LIPGLP+++A CLL VP S+SV W+ F+K+ P LFV+ F TGK+QW+ LD + W +P MP CP ++PR+G +FV G + L Y N W+ R F A+ ++G I A G +Y +P WR S + + Y+ G++ VTEGW WPF PRG VY+ D W M +G+REGW+G V R+F+++E +KVYD D+W + G P ++ RPF +R+YV R L++A+G++ K W+VVE+P + + +P + Q+L+A Sbjct: 53 LIPGLPDDVALNCLLRVPVQSHVSSKSVCKRWHLLFGTKETFFAKRKEFGFKDPWLFVVGFSRCTGKIQWKVLDLRNLTWHEIPAMPCRDKVCPHGFRSVSMPREGTMFVCGGMVSDSDCPLDLVLKYDMVKNHWTVTNKMITARSFFASGVIDGMIYAAGGNAADLYELDCAEVLNPLDGNWRPVSNMVAHMASYDTAVLNGKLLVTEGWLWPFFVSPRGQVYDPRTDQWETMSMGLREGWTGTSVVIYDRLFIVSELERMKMKVYDPVTDSWETINGPELPEQIC-RPFAVNCYGNRVYVVGRNLHLAVGNIWQSENKFAVR-------WEVVESPERYADITPSNSQILFA 398
BLAST of Phvul.009G101500.1 vs. DB:Swiss
Match: SKIP4_ARATH (F-box/kelch-repeat protein SKIP4 OS=Arabidopsis thaliana OX=3702 GN=SKIP4 PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.243e-13 Identity = 75/308 (24.35%), Postives = 124/308 (40.26%), Query Frame = 1 Query: 37 LIPGLPNEIAELCLLHVPYPYQALSRSVSSTWNRAITHPSFIFSKKTLSHPNLFVLA-------FHSQTGKLQWQALDPSSAR--WFLLPQMPSPGDACPQRLACAALPRQGKLFVVNGA--------ETLAYRAATNQWSAAGGP--GRRGFVAAEGVEGRIVAVGRGGTG--------VYDPESDTWXXXXXXXXXXXXXXVVAAGGRVYVTEGWWWPFMFRPRGWVYEVERDTWREMGIGMREGWSGVGVAAGGRVFMIAEYGDSPVKVYDEERDTWRVVGGGRFPREVMKRPFCGTGLDDRIYV 879 LI G+P++I++ CL VP Y + VS W F+ S + + N F LA +G + L+P S+R W + P P R +LFV+ G E Y AA N W P +R + A E ++G+I+A+G G +YDP + T + S + E + GR+Y+ G + VY W M M GW G V G ++++ + + + ++ ++ W + G+ + VMK+P + + I+V Sbjct: 21 LISGVPDDISKSCLARVPREYHMAMKCVSRRWR------DFVCSDEMCDYRNEFNLAESWIYALCRDISGGVFLHMLNPFSSRRSWKRINDYP----YIPMREGMGFAVLGKRLFVLGGCGWLEDATDEIYCYDAAMNTWFDVVPPLSTKRCYFACETLDGKIIAIGGLGLNPNAKRTWDIYDPLTRTCKSCSDVNIVPEMEDSFVMDGRIYIRGG-----VGGSSTAVYSASSGIWERMDDDMASGWRGPAVVVAGDLYVLDQTFGAKLTMWCKDTRMW--IHIGKLSQLVMKQPCRLVSIGNSIFV 311
BLAST of Phvul.009G101500.1 vs. DB:Swiss
Match: FBK8_ARATH (F-box/kelch-repeat protein At1g22040 OS=Arabidopsis thaliana OX=3702 GN=At1g22040 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 2.785e-12 Identity = 87/345 (25.22%), Postives = 129/345 (37.39%), Query Frame = 1 Query: 19 EKEHKDLIPGLPNEIAELCLLHVPYPYQALSRSVSSTWNRAITHPSFIFSKKTLSHPN--LFVLAFHSQTGKLQWQALDPSSARWFLLPQMP-------------------SPG--------------DACPQR--LACAALPRQGKLFVVNG---AETLA----YRAATNQWSAAGGPGRRGFVAAEGVEGRIVAVGRG------------GTGVYDPESDTWXXXXXXXXXXXXXX---------------VVAAGGRVYVTEGWW-WPFMFRPRGWVYEVERDTWREMGIGMREGW------SGVGVAAGGRVFMI---AEYGDSPVKVYDEERDTWRVVGG 810 E+E LIP LP+E++ L +P + R VS W A++ +K L L+VL KL W ALDP S +W LP MP +P D+ Q CA G L+V+ G ++T++ + N WS + GV + + V G VYDP +D W E + + + GR+ V + + WPF G VY+ E + W EM GM EGW + + V G ++ + + +KVYD++ DTW+VV G Sbjct: 37 EEECCRLIPSLPDELSIQILARLPRICYSSVRLVSRRWRSAVSTSEVYSLRKELGRTEEWLYVLT-KGHEDKLLWYALDPVSTKWQRLPPMPVVVYEEESRKSLSGLWNMITPSFNVGAIVRSFLGRRDSSEQMPFCGCAIGAVDGGLYVIGGLSRSKTVSCVWRFDPILNSWSEVSSMLASRAYSKTGVLNKKLYVVGGVDRGRGGLSPLQSAEVYDPSTDAWSEVPSMPFSKAQVLPNAFLADLLKPIATGMTCYNGRLCVPQSLYSWPFFVDVGGEVYDPETNLWVEMPSGMGEGWPARQAGTKLSVVVDGELYAFDPSSSMENGKIKVYDQKEDTWKVVIG 380
BLAST of Phvul.009G101500.1 vs. DB:Swiss
Match: FBK22_ARATH (F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana OX=3702 GN=At1g55270 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 3.304e-12 Identity = 70/275 (25.45%), Postives = 105/275 (38.18%), Query Frame = 1 Query: 37 LIPGLPNEIAELCLLHVPYPYQALSRSVSSTWNRAITHPSFIFSKKTLSHPNLFVLAF-HSQTGKLQWQALDPSSARWFLLPQMPSPGDACPQRLACAALPRQGKLFVVNGAETLA--------YRAATNQWSAAGGPGR-RGFVAAEGVEGRIVAVGRGGTG---------VYDPESDTWXXXXXXXXXXXXXXVVAAGGRVYVTEGWWWPFMFRPR---GWVYEVERDTWREMGIGMREGWSGVGVAAGGRVFMIAEYGDSPVKVYDEERDTW 795 L+PGLP+++A CL+ VP R V W R + F +K L +V F + GK+ W DP S W LP +P CA L L++ G + L Y A TN+W A R R F + + G G VYDP + W +V G VY + W+ + + Y+ E ++W + GM GW + GR++ + ++V+DE D+W Sbjct: 78 LLPGLPDDLAVACLIRVPRAEHRKLRLVCKRWYRLASGNFFYSQRKLLGMSEEWVYVFKRDRDGKISWNTFDPISQLWQPLPPVPREYSEAVG-FGCAVLS-GCHLYLFGGKDPLRGSMRRVIFYNARTNKWHRAPDMLRKRHFFGCCVINNCLYVAGGECEGIQRTLRSAEVYDPNKNRW-----SFIADMSTAMVPLIGVVY-DKKWFLKGLGSHQLVMSEAYDPEVNSWSPVSDGMVAGWRNPCTSLNGRLYGLDCRDGCKLRVFDESTDSW 344
BLAST of Phvul.009G101500.1 vs. DB:Swiss
Match: FBK28_ARATH (F-box/kelch-repeat protein At1g67480 OS=Arabidopsis thaliana OX=3702 GN=At1g67480 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 5.839e-12 Identity = 75/282 (26.60%), Postives = 109/282 (38.65%), Query Frame = 1 Query: 37 LIPGLPNEIAELCLLHVPYPYQALSRSVSSTWNRAITHPSFIFSKKTLSHPN--LFVLAFHSQTGKLQWQALDPSSARWFLLPQMPSPGDACPQRLACAALPRQGKLFVVNG-----------AETLAYRAATNQWS--AAGGPGRRGFVAAEGVEGRIVAVGRGGTG--------VYDPESDTWXXXXXXXXXXXXXXVVAAGGRVYVTEGWWWPFMFRPRGW-VYEVERDTWREMGIGMREGWSGVG--VAAGGRVFMIAEYGDSPVKVYDEERDTWRVV 804 LIPGLP+++A+ CL VP SV W + FI ++ L+VL ++ +W+ +D + LP MP P + + GKL V+ G A+ Y N WS A R F AE V G + VG G VYDPE+ TW L A G++YV G + + VY + +W G + G + V V G ++F I + V++ E +TW VV Sbjct: 39 LIPGLPDDVAKQCLALVPRARFPSMGSVCKKWRFVVQSKEFITVRRLAGMLEEWLYVLTMNAGGKDNRWEVMDCLGQKLSSLPPMPGPA-----KTGFKVVVVDGKLLVIAGCCMINGSLVASADVYQYDTCLNSWSRLADLEVARYDFACAE-VNGHVYVVGGHGVDGESLSSAEVYDPETCTWTFIESLRRPRWGCFASAFNGKLYVMGGRSNFTIGNSKLLDVYNTQCGSWH----GSKNGLTMVTAHVEVGKKLFCIDWKNHRKMSVFNAEDETWEVV 310
BLAST of Phvul.009G101500.1 vs. DB:Swiss
Match: FBK5_ARATH (F-box/kelch-repeat protein At1g16250 OS=Arabidopsis thaliana OX=3702 GN=At1g16250 PE=2 SV=1) HSP 1 Score: 58.9214 bits (141), Expect = 2.153e-8 Identity = 80/332 (24.10%), Postives = 120/332 (36.14%), Query Frame = 1 Query: 19 EKEHKDLIPGLPNEIAELCLLHVPYPYQALSRSVSSTWNRAITHPSFIFSK--KTLSHPNLFVLAFHSQTGKLQWQALDPSSARWFLLPQMPSPGDACPQR-LACAALPRQGKLFVVNGA-----------------ETLAYRAATNQWS-AAGGPGRRGFVAAEGVEGRI-VAVGRGGTG--------VYDPESDTWXXXXXXXXXXXXXXVVAAGGRVYVTEGWW------WPFMFRPRGWVYEVERDTW---REMGIGMREGWSGVGVAAGGRVFMIAEYGDSPVKVYDEERDTWRVVGG------GRFPREVMKRPFCGTGLDDRIYV 879 E + +IPGLP+++A C+ + + Y + VS W + + K S LFVL ++ K QW A DP + RW LP+ + D AC + L V+ G + + + QW A R A V G++ VA GR T VYDP +D W E + ++ G +V +F PR + D W R M V V RV+ I ++G+S +K D + W VG PRE+ + L + +YV Sbjct: 2 ESIEQSIIPGLPDDLALRCIAKLSHGYHGVLECVSRGWRDLVRGADYSCYKARNGWSGSWLFVL---TERSKNQWVAYDPEADRWHPLPRTRAVQDGWHHSGFACVCV--SNCLLVIGGCYAPSVSSFPHQKPVVTKDVMRFDPFKKQWKMVASMRTPRTHFACTSVSGKVYVAGGRNLTHSRGIPSAEVYDPVADRWEELPAMPRPQMDCSGLSYRGCFHVLSDQVGFAEQNSSEVFNPRDMTWSTVEDVWPFSRAMQF-------AVQVMKNDRVYTIVDWGESLIKTRDTDEGEWYNVGSVPSVVLPNHPRELEAFGYGFAALRNELYV 321
BLAST of Phvul.009G101500.1 vs. DB:Swiss
Match: FBK30_ARATH (F-box/kelch-repeat protein At1g80440 OS=Arabidopsis thaliana OX=3702 GN=At1g80440 PE=2 SV=1) HSP 1 Score: 57.3806 bits (137), Expect = 6.143e-8 Identity = 56/222 (25.23%), Postives = 87/222 (39.19%), Query Frame = 1 Query: 34 DLIPGLPNEIAELCLLHVPYPYQALSRSVSSTWNRAITHPSFIFSKKTLSHPNLFVLAFHSQ-----TGKL------QWQALDPSSARWFLLPQMPSPGDACPQRLACAALPRQGKLFVVNGAETLAYRA---------ATNQWSA-AGGPG-RRGFVAAEGVEGRIVAVGRG---------GTGVYDPESDTWXXXXXXXXXXXXXXVVAAGGRVYVTEGW 606 +LIP LP+++A CLL Y + SV WNR ++ F+ +K H ++ ++ +GK+ + L+ S W LP +P P L C + L V+ G + + ++A T++W A PG RR F R V V G VYD D W + E + + V GR +V G+ Sbjct: 2 ELIPNLPDDVARECLLRSSYQQFPVIASVCRAWNREVSLSQFLHQRKASRHSQELLILSQARVDPAGSGKIIATPEYRISVLESGSGLWTELPPIPGQTKGLP--LFCRLVSVGSDLIVLGGLDPITWQAHDSVFVFSFLTSKWRVGATMPGVRRSFFGCASDSDRTVLVAGGHNEEKCALTSAMVYDVSEDKWTFLPDMARERDECKAVFHAGRFHVIGGY 221
BLAST of Phvul.009G101500.1 vs. DB:Swiss
Match: SKI30_ARATH (F-box/kelch-repeat protein SKIP30 OS=Arabidopsis thaliana OX=3702 GN=SKIP30 PE=1 SV=2) HSP 1 Score: 56.9954 bits (136), Expect = 9.165e-8 Identity = 78/315 (24.76%), Postives = 120/315 (38.10%), Query Frame = 1 Query: 37 LIPGLPNEIAELCLLHVPYPYQALSRSVSSTWNRAI-THPSFIFSKKTLSHPNLF-VLAFHSQTGKLQWQALDPSSARWFLLPQMPSPGDACPQRLA-CAALPRQGKLFVVNGA------------------ETLAYRAATNQWSA-AGGPGRRGFVAAEGVEGRIVAVG--------RGGTGVYDPESDTWXXXXXXXXXXXXXXV-VAAGGRVYVTEGWWWPFMFRPRGWVYEVERDTWREMGIGMRE-GWSGVGVAAGGRVFMIAEYGDSPVKVYDEERDTWRVVG-GGRFPREVMKRPFCGTGLDDRIYVA 882 L+ G+P +A CL HVP VS +W AI +H F K+ S +L V AF + WQ P+ RW LP +PS + LA A+ G LFV+ G + +Y QW+ A R A ++G+IV G G +YDPE+D W L + G+V+V + + V +E ++G +++ GW + V + +G V+ +E DTW++V F R + T L D + + Sbjct: 11 LLDGIPEAVALRCLAHVPLHLHPNLELVSRSWRAAIRSHELFRVRKELRSSEHLLCVCAFDPEN---IWQVYSPNCDRWLTLPLLPSR----IRHLAHFGAVTTAGMLFVLGGGSDAVSPVTGDHDGTFATDQVWSYDFVQRQWTPRASMLVPRAMFACCVLQGKIVVAGGFTTCRKSISGAEMYDPENDVWTSIPDLHQTHNSACSGLVVNGKVHV--------LHKGLSTVQVLES---VKLGWDVKDYGWPQGPMVVVEDVLYVMSHG----LVFKQEGDTWKMVASASEFKRRI---GMAMTSLSDEVLIV 300
BLAST of Phvul.009G101500.1 vs. DB:Swiss
Match: FBK16_ARATH (Putative F-box/kelch-repeat protein At1g27420 OS=Arabidopsis thaliana OX=3702 GN=At1g27420 PE=4 SV=2) HSP 1 Score: 56.6102 bits (135), Expect = 9.561e-8 Identity = 76/337 (22.55%), Postives = 123/337 (36.50%), Query Frame = 1 Query: 19 EKEHKDLIPGLPNEIAELCLLHVPYPYQALSRSVSSTWNRAITHPSFIFSKK-TLSHPNLFVLAFHSQTGK-LQWQALDPSSARWFLLPQMP---------------------------------------------SPGDACPQRLACAALPR--------QGKLFVVNGAETLAYRAA--------TNQWSAAGGPGR---RGFVAAEGVEGRIVAVGRGG--TGVYDPESDTWXXXXXXXXXXXXXXVVAAGGRVYVTEGWWWPFMFRP---RGWVYEVERDTWREMGIGMREG--WSGVGVAAGGRVFMIAEYGDSPVKVYDEERD---TWRV 801 E +IPGL +++AELC+ +P ++ V W + F +K T + + S+ G+ + W+ D S + +P +P P + ++LA +PR G L+V+ G T Y + TNQWS P R RGF A ++ AVG G +YDP++ TW E + V +VY FM R R V++ E ++W + + REG W +GV +V + + +YD +++ WRV Sbjct: 4 ESSSSPIIPGLTDDVAELCVSKIPRSSFQITSQVCRRWRSFLRSQHFAAVRKLTGTVEEFLCVLMESECGRDVYWEVFDASGNKLGQIPPVPGPLKRGFGVAVLDGGKIVFFGGYTEVEGSGINSTTVSASADVYEFDPANNSWRKLAGMNIPRYNFAFAEVNGLLYVIRGYSTDTYSLSNAEVYNPKTNQWSLMHCPNRPVWRGFAFA--FSSKLYAVGNGSRFIDIYDPKTQTWEELNSEQSVSVYSYTVVR-NKVY--------FMDRNMPGRLGVFDPEENSWSSVFVPPREGGFWVRLGV-WNNKVLLFSRVCGHETLMYDLDKEKGSKWRV 328 The following BLAST results are available for this feature:
BLAST of Phvul.009G101500.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.009G101500.1_Pv_G19833_v2.1 >Phvul.009G101500.1_Pv_G19833_v2.1 ID=Phvul.009G101500.1_Pv_G19833_v2.1; Name=Phvul.009G101500.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=345bpback to top mRNA from alignment at Chr09:15955324..15956760+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Phvul.009G101500.1_Pv_G19833_v2.1 ID=Phvul.009G101500.1_Pv_G19833_v2.1; Name=Phvul.009G101500.1; organism=Phaseolus vulgaris; type=mRNA; length=1437bp; location=Sequence derived from: Chr09:15955324..15956760+ (Phaseolus vulgarisback to top Coding sequence (CDS) from alignment at Chr09:15955324..15956760+ >Phvul.009G101500.1_Pv_G19833_v2.1 ID=Phvul.009G101500.1_Pv_G19833_v2.1; Name=Phvul.009G101500.1; organism=Phaseolus vulgaris; type=CDS; length=1035bp; location=Sequence derived from: Chr09:15955324..15956760+ (Phaseolus vulgarisback to top |