Phvul.009G118300.2

Transcript Overview
NamePhvul.009G118300.2
Unique NamePhvul.009G118300.2_Pv_G19833_v2.1
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr09supercontigChr09:18132455..18138882 -Phaseolus vulgaris G19833 genome v2.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phaseolus vulgaris G19833 genome v2.12019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.12019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot2019-10-18
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pspvL531Pisum sativum Cameor genome v1aPisum sativum
pvvuR806Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
caipvL0626Cicer arietinum ICC 4958 genome v2Cicer arietinum
crpvL596Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL501Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccpvL0664Cajanus cajan Asha genome v1.0Cajanus cajan
anpvL0459Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0904Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
aspvL649Vigna angularis Jingnong 6 genome v1.1Vigna angularis
pvzwsR760Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvvfhR856Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvtifR850Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvrvR748Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvuaR697Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvssR967Vicia sativa cv. Studenica genome v1.0Vicia sativa
canpvL481Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpvL640Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpvL499Cicer arietinum
ccapvL711Cajanus cajan cv. Asha genome v2.0Cajanus cajan
pvvumR875Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvvaR903Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR913Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvasR875Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR875Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvpvfR746Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvvunR751Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Phvul.009G118300Phvul.009G118300_Pv_G19833_v2.1Phaseolus vulgarisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Phvul.009G118300.2Phvul.009G118300.2_Pv_G19833_v2.1-proteinPhaseolus vulgarispolypeptide
Phvul.009G118300.2_Pv_G19833_v2.1Phvul.009G118300.2_Pv_G19833_v2.1Phaseolus vulgarispolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.009G118300.2.v2.1.CDS.6Phvul.009G118300.2.v2.1.CDS.6_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.009G118300.2.v2.1.CDS.5Phvul.009G118300.2.v2.1.CDS.5_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.009G118300.2.v2.1.CDS.4Phvul.009G118300.2.v2.1.CDS.4_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.009G118300.2.v2.1.CDS.3Phvul.009G118300.2.v2.1.CDS.3_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.009G118300.2.v2.1.CDS.2Phvul.009G118300.2.v2.1.CDS.2_Pv_G19833_v2.1Phaseolus vulgarisCDS
Phvul.009G118300.2.v2.1.CDS.1Phvul.009G118300.2.v2.1.CDS.1_Pv_G19833_v2.1Phaseolus vulgarisCDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.009G118300.2.v2.1.three_prime_UTR.1Phvul.009G118300.2.v2.1.three_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgaristhree_prime_UTR


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.009G118300.2.v2.1.five_prime_UTR.1Phvul.009G118300.2.v2.1.five_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgarisfive_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Phvul.009G118300.2 vs.
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..73
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..45

Sequences
The following sequences are available for this feature:

protein sequence of Phvul.009G118300.2_Pv_G19833_v2.1

>Phvul.009G118300.2_Pv_G19833_v2.1 ID=Phvul.009G118300.2_Pv_G19833_v2.1; Name=Phvul.009G118300.2_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=158bp
MLENLQAVPATETAPVVKRYAPPNQRNRSSNRRKSSDRLDRTNSIGSELE
KNQVASSRSVHIPDHGDAGSSNLLNENHYSRFITLEGCSCSAASQLLNDR
WTAAMQSYNNPKDSSDKPVMYSSGASVWTHQQFRHPQQDFLGELRRQMHN
ANPSFTT*
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mRNA from alignment at Chr09:18132455..18138882-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.009G118300.2_Pv_G19833_v2.1 ID=Phvul.009G118300.2_Pv_G19833_v2.1; Name=Phvul.009G118300.2; organism=Phaseolus vulgaris; type=mRNA; length=6428bp; location=Sequence derived from: Chr09:18132455..18138882- (Phaseolus vulgaris
ATTATGAATTAGTGACGATATATAAGTTTATGGTAAGAGGAATGTGCTTT
CTCTCTCTTTGAATTCTAATTCAACTCTTCTCTTTCTCTTTCTCTCTGTC
TTCTGTGGAAGACGAGGAAGTAGTAGAAGCAGTTAGAGAAAGATGCTGGA
GAATCTTCAGGCTGTTCCGGCGACGGAAACCGCCCCAGTCGTCAAGCGCT
ATGCTCCTCCCAACCAGAGGTATTTTCTATTATTAATTATATTATTTATT
ACTTCAATTACGTTACCCACTTTCCTTTTCAATTCCTAATATTTCCCATT
CCTTCTTTTGCAGGAACCGTTCTTCCAACAGGCGCAAATCATCTGGTCAG
TTCACTCCTGTTTTTCTTCCAATCAATTGATCCTTTTATATCTATTTCGA
TGTCTCAATCACATGCCTTGTCTTATTTATTACTGCAATTCCAAATGGGT
ATTTAGTAATGTCAAAGAGGTATAGATATAGTCCCTTTTTGCCCAATGAC
CACTAGTCTGCGTCTTTATTTTACTCCTCAACTCGATCCCTTCCTTATTA
GTTGCACACGTCATGTTTGGGCTGCAAATTTCATTTGCTATAGCTCAATT
ACTTCCCTTTTACTGTTTATCTTTTGTCTATAAAATGGGAAGTACTTAAG
TTAAATCCAGTGTTCCTAGTTTGGGATTTTTCCTGATTTCAAATACCATC
CTGTAGTTTCAACTTTATTCCCTAACATATCCATCTTCAGCTCATGGAAG
TGTAAGCATAAAACTAGTCATTTTGAGGAAGCTAACAATAAAAATGACAC
ATTTTACCCCTTTTCGCACATACATGCACCCCTTACCCCTCACACATCGT
CATTCTGTGAAAAAAAGATATAAAAAATGGAATAGGTTGGTTGTATGGTA
ATGGAATGAATCTCAGGAGGAAATTGGACAAAGTTTGAACAACAAGGTGC
GACATTGAAATGGGGACAGACTGCAGGGTGAGGAAATGAATATATGTCAG
ACACAACACGATATATTGAAGTTAGCTTTGCTCACCCTACATATGCATGA
AGTTATACGAGTTTATACAAAGAAAAAGAGCAGGCTTAAGCCTTGTTCAC
TCCTTTTAAACTCTTAATTTTATTGTGTTTATAAAATAACATCAAACACT
AATGATTTTCTTCTGTATATCAAAATATTGTCAATCAAACATTGTTTTGC
TTGAAAAATCTAAAGGCTAGATAGAAATGAATTTTGAAAAGGCCAAATAT
AAACTGAATCACCCCACACATCCCTCCCTGTTGACAATGGACTAATGACA
CCAGTGTTGGCTTCATCCTTCAGGCGTTGTCTTATGGGTGAGGATTTAAA
AGAAATATCACATGAGAATAACTGTCAGTTACCATTGGTTTGCAAAACAT
ATATGGTTAAATTGTTGAAGTTGAGAGGAAGTCTCTATACTTACTTAAGG
TGCTACCGAACTTTACTTTTTTAATTTTAGTGCTATGTTCTCAATTAAGG
TACTTACTATTTACAGTGACTAGAACAAAAATTAAGGAAAGAAAAATATA
ATATTTTTTTCAGTGGCCTTCCTTAATGACAAACCACTAATCTCATTTGC
ATAATTCAAACTGAGCAATGGCAAAAGCTTTAGGCACATTTTCTGTTAGT
CCCCATTTTAGTTGGTTTGTTTCTAATTTCTAGTTGTTTGGTTTTAATTA
ACTTATGTAGATCGTCTTGATCGGACAAACAGTATTGGGAGTGAGTTAGA
AAAGAATCAAGTTGCTTCTTCAAGAAGTGTTCACATTCCAGATCACGGAG
ATGCTGGTAGCAGTAATCTTCTTAACGAAAACCACTATTCAAGATTCATA
ACTTTAGAAGGGTGTAGTTGCAGTGCAGCTTCCCAGCTTCTCAATGATCG
TAAGTGTATCCCAAACTTTGCTTGAAGAACTTGCATATATTGAGAAACTG
AATATTCTTTCACTCTGATATTTTCTTATAATCTTACTAGAAACGTTGCT
GTTAGTCTGTCCGTGGCAAATGACAATTGCTTTCAATTAGTAAGCATCGG
TTTGACATCTGCAGATTTTTGGGGCATATGAAACATATGGTTTGGTTTCA
ATGAGCTTGTTGGTGGAATGGGGATGCCTAAGGCCCTCTTTTAGTTTTAT
CTAATCTGGTTTATGTTCACCTATTCCTGTTGGAGTCCAGAACTGTTAGT
TTGCATTCCATTGATTTGTTTCAGACTCATCCTCAGTAAAAGCAGGTTGA
GCAATTATAGTCAGGAGAATTTAGTGAATAACTAAGTGCAAGGTTGCTAG
TAGCAGTTAGGCCAACAGGAAGTAGGAAATAATGTAAAAAGAGGTGATAG
AGGGAGTAAGGAGGATATTGTGTATGCAAGAAAACTGAGAGTCGGCACAG
CCTTTAGGTCTGTCAAAAACCAGGAAGTGTCATTAGGAGAGAATTCAGAC
CCTTGTATACACTAGTCCTCAGATCAATTATCACATTCATATCATTTAAG
GCATTCATTTTGTCATCAAATTTCCTACCTCTGTTGAGAATAATTTTTGT
TGTGTTATTATTCTTACTATTGTACTACTATGTTTCCTAATTTCCTTTTA
CTGAGCAGACATGTATATCATGTCATGATAAAACAAAATCCAAAATTAAA
GAAATTCATGACATGATAAATAACAAGTAAAAGTTTTTACACACACAATC
ACCATCCATCTAGGAGCAATAGGAACACAGTATTGAAGTCAAAGAATGAA
AGTTGATTGTGAAACTGGAATATTATCACTAGTTATTTTCAGAAAAAGTT
GTGTTAGTTTAGAGTAACTCAGTCACGGATATGTTTGCTCCCCTACTTTT
ACCATAGGTTGCAAGTAGGATTCTGCATCAAGATCCATGACTCGATCATA
ATTGAATGTTCATAACTACTTTGTATTAGAGCTATGTTAATTGACAGAGG
GAATTTAGCAGCAAAGTTAGATGACTTCATGGAGTACCCGTATGTTAGGC
AACATGCTATTGAAGAAACAAACAATGGTAATTAAGGACATATCAGAGGT
TCAAAAATAGAAATGAATCACAGCGTGGGATCCATGGTTCCATGATAGCC
TAAAATGGAATTTCCCACTTATGATGACACCAAAGATCCTTAGGATGGTT
GTAACACTGCGATTGACTTTTAACAAATTGCTAAAGGAGACAAGGTGGGA
TTGAATGCATTTCATGTCTTAGGAGAAGTGCAATTATGGTTTTACTAGAT
GAAATAAGAGGAGTCAGAACTGGATTGGATTCACTTCAAGCAATGTTATC
TTATACAATTTGCACCTTTCAGTAATAAATTTCGTGGTGAACTGACCCAT
TTGAAGTACTTGGGTTCTCTAGAAGATTATCAATGTCCAATTCAATCCTT
GCTAGCCTATACCTGCAATCTTAGACCTTACCAACAACTGGATCTTTTTA
CTGCTAGTTTGATAGAAGAGTTAAGGATTGATATTGAACTTCAGCAAACT
AGGTAGGCTTGGCATTGAGATGAATATGGTCAAAGTATTAGAATTGTGCA
AGCAAAGCAGCGCTAACACCATGACATTCTATGGGAAAATTCTTCAATTG
TGCTTCTTTTACCGCCACTCAAACAAGTTAGGAACTAACGAGGAGCCCAT
AAATAAGCTAGATGGAGATAGTATCATAGTAATAAGGGGAAGAATGACTG
AAAGAAGAGCTAAAGGGCATGTGTTACAATTGTGATGAAGTTTAAGTAGT
GGGGGATAAATCTAAAAGGTTGTTTTGAATTCAAGTACCTGAGAAGATGG
TAACCCAGTTGCAGGGAACCTCTTGTTCAACTTTAGACAATTTATCTTGC
GCTGGAGGACCTAGTCGAAAATCGAGGCAAGGAGTAATGAGGTGGACCAC
TATTAGGATTACTACCGTATCTCTTACTAAAATCATGAACTACTTTAGCT
TATTTTGTTTCCTCATATCAATAAGATGTGAAAATCAAATATCAATAAGA
TTTGCAAATCAAGATCTTTGATTTTAGATCCTTAGCATTATTATTTTTAT
TTGCATAATTGGTAGTTTTGATCCTAATAGATAGGGATCTCTTTATTGTT
TGTTTTATCAATTAGGATAATTGTTAGATATTTTATCTCAATTAGAGATA
TTTTGTAGGCTTTTAAAGGGAAAATCTAATTAGAATATTATCTTGATTAA
TTATTTTAAAAAAAACTTGTGTTAGACTAGGAGAACTTTTGTCAAGGATG
ACTTTGCTTCTTAATTTCACTATAGGTTGCAAGAAAGATTCTTTTGTGCC
TAAGACTATGAGTCAATCTTAGGTTCATAGCAACTTTTAGGGAAGTTTCC
CTAGTGATTTGGTGCTTATCAGAAACCTAAACTAGTTCCACATCAAACCA
AATTGTCTAGCCTTGGGGTACATATCGAAGGAAGTGATTCTTCTTGTCTT
GCATCCAATACCTTGGATCTTTAAATCCCAACTCAGTCGGCTTACCTATG
GAATAGCCTTGAGAAAATCTTATTTGCAATACCGTAGTTTCAACCCCTCT
GTAGATTCTAGGAATCCTAACAAAAGAAGAAGCATTGATGGGAAGAAAAT
TGGGTTTGAGTCACCAATGAAGAGATGTGTGCATTGAACAAAAGTAGAAC
ATGGAATACTGTGAAAAACTTGATATAGAAGTCCAGATGGGTGCAAATAG
ATCTACACTATGAAGTATACTCGAAAATTTAGCATTGAGTATCAAGAGAC
ATATGCACCAATGGCAAAAATGCACAATCATAGTAGAGACTTTTTGTTGC
AGACTTGTTGGAAGAATAGTATAGCAGTGACATTGATAAAAGGAAAGCTT
GGATTAATCTATATATTATGTAACTACCTTTGTACAGAATATTCATTGGT
CAATGTTCAGTCTATCTGTTTCCATAACGAATTATTTTCAATTGTCAAGT
CTAAGGCAATGTCAACATTCTCCTAATTTGTTCTGCTTATTATGAATGCG
TGTTTTCCCTTTAGTTCTATGTCTACATGGTTGCATGCCTTTTGTTTCAT
TAGGGTTTTATTGTCCTCAGCATTTTAACCATTCAGCTCTGCGCAACACA
TTAAGTTTATTGGATTGTGAAGAGAAAGGGATGGGTGGGTGAGGCTGGAG
TTTGTTCATTACTTACAAGCCCTTTATGTTTTGCCCATATCCGTGGTTAA
CATTGCCTGTTATCTTTGTTGATCATAAATTTATGTTTTCAGGTTGGACA
GCTGCAATGCAGTCCTACAATAATCCCAAAGATTCATCTGGTTAGTGCAC
AACCATAAAATATTATATTTTTTCCATTTTATGAACACTTGCAAACTTTG
TTTATAGTATTTGATGACTATGAAACTGAAACTTGTTTTGTATGTCTAAG
AAGTTCTCAATGTATTAAATTGAGGTCATCACTGAAACTATATATATGAA
ATTATTCGGACTGATTGCTTGTATCATATAAACCAAAGTAGCTCAAAATC
CTGCTCATGTAATAAATATGCATATTATTTTGTAGCATCTAATTGAAAAA
TTGTTTATTACCAATTGGATAAATCTTGTGTCTTCTAATTGATGATTAGA
TATGAAATGAGTGATCTATGAGATGCTTATGAGTGTTTTGTTATAATCAA
GCAACTAAAAAGTGTTTTCTTACCTTATACACTAGTTAGCAGTGCTTAAA
GGGTTTTTTCTTCTCCTGAACATCTCCACCACACGCTGTATCGGTAATTC
TGTCTTTTGTTTATGATTTTTATTAACATTTTGTTGTCCTGTTGATGCAT
TTCAAGTTGAAGCATCATCCTTTAAACAGTGGCGTTTACTATTTTTGTTT
CTATGTTGCTTTTGGGAATTGGGATCCCTTGTTTTACCATTTTATCACTG
CTGTTGATAAATACAATCAATAATAAATTGTGCTGCATAAGAACTGTTAA
GCATGGGATGAAGTCTGGCTTTTACTTTACGATTTCAGACAAGCCAGTTA
TGTATTCAAGTGGGGCGTCAGTGTGGACTCATCAGCAGTTTAGACATCCT
CAACAGGTAATGACTTTCCCTTACCTTGGCATCACATTTTGTTTCAGGTT
ATGCACCCAGCTGAGTGCTTCTTCCTCTTGTGTGTCACAGCAGGACTTCC
TGGGAGAACTTCGTCGCCAAATGCACAATGCTAATCCTAGTTTCACCACA
TGATGGCTGACTTGGATGCCTTGTCTAATAAAGTTTTTGGAAGAACGTGG
ATTTGCCGACTGCTTTAAGAACACTTCCATACTTAAGCTACTTCTTGTTT
TTGTCAAACTCATTACTAATACATGTAATGTAACTGAATTTCAGATCATC
CACCATGCCTCTGTTTGTGTAAATTGGGATGTCGCACATTCAGGATTCCT
ATTTAAAGATTTATTCTGTATTCTTTCA
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Coding sequence (CDS) from alignment at Chr09:18132455..18138882-

>Phvul.009G118300.2_Pv_G19833_v2.1 ID=Phvul.009G118300.2_Pv_G19833_v2.1; Name=Phvul.009G118300.2; organism=Phaseolus vulgaris; type=CDS; length=474bp; location=Sequence derived from: Chr09:18132455..18138882- (Phaseolus vulgaris
ATGCTGGAGAATCTTCAGGCTGTTCCGGCGACGGAAACCGCCCCAGTCGT
CAAGCGCTATGCTCCTCCCAACCAGAGGAACCGTTCTTCCAACAGGCGCA
AATCATCTGATCGTCTTGATCGGACAAACAGTATTGGGAGTGAGTTAGAA
AAGAATCAAGTTGCTTCTTCAAGAAGTGTTCACATTCCAGATCACGGAGA
TGCTGGTAGCAGTAATCTTCTTAACGAAAACCACTATTCAAGATTCATAA
CTTTAGAAGGGTGTAGTTGCAGTGCAGCTTCCCAGCTTCTCAATGATCGT
TGGACAGCTGCAATGCAGTCCTACAATAATCCCAAAGATTCATCTGACAA
GCCAGTTATGTATTCAAGTGGGGCGTCAGTGTGGACTCATCAGCAGTTTA
GACATCCTCAACAGGACTTCCTGGGAGAACTTCGTCGCCAAATGCACAAT
GCTAATCCTAGTTTCACCACATGA
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