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Transcript Overview
Name | Phvul.009G120800.1 |
Unique Name | Phvul.009G120800.1_Pv_G19833_v2.1 |
Type | mRNA |
Organism | Phaseolus vulgaris (Common bean) |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
Phvul.009G120800.1 | Phvul.009G120800.1_Pv_G19833_v2.1-protein | Phaseolus vulgaris | polypeptide |
Phvul.009G120800.1_Pv_G19833_v2.1 | Phvul.009G120800.1_Pv_G19833_v2.1 | Phaseolus vulgaris | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Phvul.009G120800.1.v2.1.five_prime_UTR.1 | Phvul.009G120800.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1 | Phaseolus vulgaris | five_prime_UTR |
Phvul.009G120800.1.v2.1.five_prime_UTR.2 | Phvul.009G120800.1.v2.1.five_prime_UTR.2_Pv_G19833_v2.1 | Phaseolus vulgaris | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Phvul.009G120800.1.v2.1.CDS.1 | Phvul.009G120800.1.v2.1.CDS.1_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Phvul.009G120800.1.v2.1.three_prime_UTR.1 | Phvul.009G120800.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1 | Phaseolus vulgaris | three_prime_UTR |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR012866 | Protein of unknown function DUF1644 | PFAM | PF07800 | DUF1644 | coord: 47..210 e-value: 2.9E-68 score: 229.2 |
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.009G120800.1_Pv_G19833_v2.1 >Phvul.009G120800.1_Pv_G19833_v2.1 ID=Phvul.009G120800.1_Pv_G19833_v2.1; Name=Phvul.009G120800.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=324bp MARVGKFRNKSQGRKASPCLLSCARKNLKDVHVKKSSSKTSEKKDWEDTT CSVCMEVPHNSILLLCSSYDKGCRPYMCATSNRYSNCFEQYKKAYTKATS VRSLQLEANNSNFDLSTGESKDNTEVPELLCPLCRRQVKGWTVVEAARKS LNAKKRSCMQDDCSFVGNYKELRKHVRSKHPFARPREVDPIREEKWKRFE CERERNDVISTILSSTPGAMVLGDYVLEPNDHAFYSDEYDSDDEYLEDDF FSVRSIGLGRAGHFLPNIRYNQDRAADSFDVDRFGFQSVASAGSAAVSGR RLHRILLGRTRRRRRHRIANARR* back to topmRNA from alignment at Chr09:18456337..18462405+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Phvul.009G120800.1_Pv_G19833_v2.1 ID=Phvul.009G120800.1_Pv_G19833_v2.1; Name=Phvul.009G120800.1; organism=Phaseolus vulgaris; type=mRNA; length=6069bp; location=Sequence derived from: Chr09:18456337..18462405+ (Phaseolus vulgaris GAACAAGTGAGAGGAAACCAATCTTGTGTAGGTTAGGTGTTGCAGTACCG
GCACACGTCACCTCTGCCAGCCTTTTTTATAATCGGATTTTAGAGGGCGT
GAGCGCGAAGATCGGAACACTACTCCGATTTCCTTCCTTTCCACTGTTTC
AACAAAACGACGCTTCCCTAACCGTTTCTTGGAGAATTCCGGTTCCAGGT
ACTCATCTTCCGAATCGTTCCCTCTCGCGAGGGTTTTCTTAATCTCTTCT
CCTGATCTCTGATGCCTCCATTTCATAATTTTCTTTCATATCTTTATGCA
ATCTTGACAATGTTTCTGCATCTTTAAGCGCTTTTAGAAATTTTCGTTTG
ACAGAGGCCTCGATTTATGAATTACACCTCACGATTCCGTTTGTACACGC
TGCTTAGAATAGAACAGATTCACGATCTTGAATTCCGCGATGGTGTTAAG
ATGTTGAACCTTTCTTTATAATTTCGTCTCTCATTTTAGTTCCGCATTTC
GCCACGGTGACATAATTGTCTGTTTCCATATTGTGACCGAGATTTCCGCG
CATGAATGTGTTTTTGAAAACTTAAACTCTACTGGTGAGGTAAAGAAATT
AAATATACTATGAACAATTCCAATAATTTGGAATTTGGATAATTTCGTTT
CGGTTCTTTGACTGATGTGACGTCCTGTAAATTTCCACCAGGTTGTTGTT
GTGTCATATGTGCGTGGGGTGCATTGTTTCTCTCCAGAACCAAAAAGGCA
CTGTTAACTTAATTGACAGATGTTATGAGTGTAATTTTATTTTAGATACT
CAAGTTTGCTCTCACGTTGTCTTGATGATGATGTGCTGTTAGAAAAGAAT
ATGGTTGTTCTGTTTTCTCATTTCATTAAAATGGTGGATTACTAGTGCCT
GTGCATCTGTCGGATGTGATATTATTTTATCCAGTTGACTTCCTAAACTG
TGGATTCTTGATAATAAGATCTGTGAGGAATGTTACAAGTTGTGGTTGTG
TCGCAGTTGCAGAGACACTTAAAAACGGGATGTGATATTATTTTATCCAG
TTGACTTCCTAAACTGAGGATTAAGATCTGTGAGGAATGTTACAAGTTGT
GGTTTTGTCGCAGTTGCAGAGACACTTAAAAAACCTTTATCTTGTGGTGG
TTGAGGACCATCTTTTAAACCTTGTTTGTAGAAAGTGGTAATACACTGGA
ATTTTTTTTCGTTGATGTTGAATGATTATTTTTTTCCCCTTTTAATTTCT
TTTTTATTTTTTGGATGCAATACCTAAAAACCTGTGGAAATTGAAATTAG
GATGCAGAACACGTGGCTTATGTTTTTTATTGCTTGCTATCTAGTATTAC
ATTGTGATGAATGCAGTATCTGAATTGTCTTAACTATATTAGACCTTTGC
CGATGTTTCTGGAAATAAAATAGTTGTCTTCAAAGTTGGCCTTTTTCAAT
GTTGTGTGTTGTAGTTGTTTTAAGCCTGCATGTCAGATTATTAAGATAAC
TCAACAAGCTCAACAATGAAACTTGTTGAGTCGAATACTTTTTTATTCTA
TTGTTTGTTGTCATTTGATATGCTCTGTATTGATTGATTTCCTTGTTTCA
GTTTCAGAAGTACTAGTTTATGTTTGATAGTTTCACGGTGTGTTTGGTAG
CGCTGATAGAGACTTGAGTAGCATGGGATGCCTAGTGGAATATTTAAGTG
TTTGATTCTCTACCCTTAATAGCTAGCTTTTAAGTCTGAGTTCTCCAAAT
GCTTGGGTGCTTATAAATTGGCTTTAGACTTGGTTGTCGATGCCTTTGGA
AACAGTTATGGAGGGTTTTGGCCAATAAGAAAGTTGAGGGAAACGTCATC
AAGCAAAGTGTCATTTGGTGGAAGTTGTTGAGGAGTGGTGCTATGATGGG
GAACTTGGGTATTATAGGGTGCCTAAGTCACACATTTAGTTGTCTGAGTT
GCTTAGTGGAGTATTTAAATGTTTTGTTCTCTTTCTTTAATGACTAGTTT
TTGAGGGTGGTTACCAAAGTAGTTGGCTGTTTTCATGACGAAAGAAAAGA
GAAATGATATGGAAGTGCGAAGAAATCAGGTGATGTTGAAAAATGTGCAT
TGTATGGTATAGTGGAAATGAACAAGCAAACATTTTGGCAAACTAACAGG
TTAAATAGAACAGGCCAAGCCTAAAGAAGATTTCTAACAAACTAATGGGC
CGCCAGGCTTTGGTAGCCATACTTTGGCAAGGCCTTACTTGATCTGACTA
TTTCTTTCTCTATGACAGTTGGGATTTGCATTATATCTTTTTCAGAGGTT
AAATTTGTAGGATTAATATCAGAACTCGTAATCCATTTGTCCTGGTTTTT
GTCATGATGGGTCCACATTCACAATTCATGATGTTCTTTTATATTTGAAG
TCTTTGGCATTATTAGAAAATGGTCATGAATGTTGTTTTGATAGAGGATA
TTTTTCTTAAAAATAATTTATACTTATGTTTCATTTATATCTTTTCCATT
CACACCTTTTTTTGGACCCTTTTGTTCAATGATTAGCATCTAGTTGATAA
TCATTACTTGGTTCCACATTGTGTGTAATACCGTAGTTCAGAGATCTTGA
TCAGCTTGCAACCACTAAAATTGTGTTGTCGGTCATAAGGAAAGGAAACC
CTATTCTTATATGAATGAGCATTAGACGTATTACATGTATTACATTTATT
GTTACTTACTCTATATAAATGAAAATTTGAAATAGTTATCAAGTGTTGCA
AATAAAGGATATTTAGAATCATAATATAGAAAAAGAAGAGTGCCATTAAG
TACCCAGTAATTTTGTATGTGCTGATTTACCTTGCGATTTGCATAAACTC
AGATGTGTTTAGAAGGGATGAAAATATGTAGATTCTCTTTCATGGTAGTT
AAAGTTGGGATTTAAATCATCAAATCCCCCGGTTTTACCATTTTAATCAC
ACCCAGCAGTTCAAATCCTAGGTAAATTCTTCATTGAGGTAAATTCCTCT
TACATCCAGATTTAAATGCCATAATCAGTAAAATCCATCAATTTTGCGAT
GGCACTAGTGGCCCATTTTCTCCCGAGCCGATTTCTCATTTCTTGTTTGT
GACACATCCAACACCGTATGCACATTTTGTTTGATTTGGTGAAACCCTTG
TCATCATATGAAGCTTAGTCTCCTTCACTCTTTTCTTCTGTGTTGTTTGT
TGAGCCCTTGCCGTTCTTGGTATATCTTCCTCTGTTCTCTGAGTTGTTGC
TATTCTTGGTTTGTCTTCCTCCATTGTTAATCTGTTTGAGCTTCTATTTG
GATTATGAAGTTGATGGAACTGAGAATGGGGATGGAAGGGGGGATCCCTG
TGATTGTTATTTGTGGATCCTTCTGATTATAATGTGATACGTTTTCTAGA
TCAGACATCTAGATTCTAAGATTAGAGTAGTTCTGTTTGCGTTGTGTTTA
ATATATTATGCCTTGCAAGGTTTTGATGTGTACGTTACCTTTTGTGTTTT
TTTTTTTGTTTTTTGTTTGTTAAGTTCGGTACGACTTAATGGATTATGAT
ATGACTTATGAATTTAATTTTGTAAAATCCATCCATTCAATATGTGATTT
TTACCACTCTTCCCAATTTAAGGTGAAATTGCTATTTTAACTACATTGTT
TTCTATCATTAGATCATGAGTGATGTCTGGTAGTGTGGATACATGAATCA
AGATGAGAAAGATTGAGTGAATGCAATGTCATAGCTCTCTATTGTATGTT
TTGTTTAAGATTCCATTTACATAGGACGATCTGCTGATATGTAATAGGTA
ATGATAAGATCGATTGGTTGCACAAACCTTTGGTTTAATTTGTATCTGTT
GTCTTTTTTAGTGACGATGCTTGTTATACAATTTTGCAAGCTAGTGGTTG
TACATGTACTTATTATGTATTATTTCTCTTTTAATATTTTGGGTTATGGT
TTCTGAATTTCACATTACCCCGTAGTTATCAATTTATTTCCAATTTTCTG
TAAAATGAAGTTTTGTTTGCTGTTTTATCTTAGTTGTGTATTGTGCTGCA
TGTTAGAATGTGGTGAAGGCTCTTATGATAGAGCTTGCTGGGCTTTAAGC
CCTCTATTACATTAGCTATATGAATCACATGATTAGTGCTTATTGTGGTG
AGCAAGAACGAACTAATGTTGTGTTTCTACTTGTTATTTAAATGCATGCT
TAATTTAATCTTGACTCAATACTCTCCTGCCATTTGTGCCTTAGATGTAA
CTGCAAAAGTTGTCGAGAATGATTGAATCATTATGATAATTTTACACGTG
TTTGTTGCTAAGAAATCTATAGGTTTTGTAAAAATTTCTACAAAGTCATA
TTAATGGTATCATGTGAAATATGTACTTCAGACATTTGATGATTGTGGTT
GGAATGACTAACATTTTAATTTATTATTCTACATTTTCTCTCCATTCTGA
AAGACTTACAGTGATGATTGGTTTTCCTTGATCAGTTTAAGGTTCAGTTT
GTAAATGGCGAGAGTTGGTAAGTTCCGGAACAAGTCTCAAGGTCGGAAGG
CATCACCATGTCTTTTGTCTTGTGCAAGAAAAAATCTAAAAGATGTTCAT
GTAAAGAAGAGCTCTTCTAAAACATCGGAGAAGAAAGATTGGGAAGATAC
AACCTGCTCTGTATGTATGGAGGTCCCCCACAATTCCATCCTCCTGCTTT
GTTCTTCTTATGACAAGGGTTGTCGCCCTTATATGTGTGCTACTAGTAAT
CGCTATTCAAACTGTTTTGAACAATATAAAAAGGCATATACTAAAGCAAC
ATCTGTTCGAAGTTTGCAGCTAGAAGCAAACAATTCAAATTTTGATTTAA
GCACAGGTGAATCTAAAGACAATACTGAAGTTCCTGAGCTTCTTTGCCCC
CTTTGTCGCCGGCAGGTGAAAGGTTGGACAGTGGTTGAAGCCGCAAGGAA
GTCTCTGAATGCCAAGAAAAGAAGTTGCATGCAAGATGACTGCTCTTTTG
TGGGGAATTACAAGGAGCTTAGGAAACATGTTAGGTCTAAGCATCCATTT
GCACGACCCCGAGAAGTGGACCCAATAAGAGAAGAAAAATGGAAGAGGTT
TGAGTGTGAAAGAGAACGAAATGATGTTATTAGCACAATTTTATCTTCAA
CACCAGGGGCTATGGTACTGGGGGATTATGTGCTGGAGCCAAATGACCAT
GCCTTTTATAGTGATGAGTATGATTCAGATGATGAATATCTAGAGGATGA
TTTTTTCTCAGTGAGGTCCATTGGCTTGGGGAGAGCTGGGCACTTTTTGC
CGAACATTAGATATAATCAGGATCGTGCTGCTGATTCTTTCGATGTTGAT
CGGTTTGGTTTTCAGAGTGTTGCATCTGCAGGTTCTGCTGCTGTCTCGGG
TCGCAGACTACACAGGATACTGTTAGGAAGGACTAGAAGACGACGGAGGC
ATAGAATAGCAAATGCAAGAAGGTAAAGTTCAAATACAAACTACAGAAAT
GTAGGGAAAGAGCTGCACTTCTGCAAATAGTATGCCAGTGATCTTGGCAT
GAGTGATTTTGTTGCTATGCCAGAGCATTTTTTATAATTTAATTGGCAGA
GTATAGCAGTTCATCTCATCTATAGATTGGTATGGCACCGTGACTTACCC
TGTTTTTATATTTTTTTAAAATAGACTGTACAAAAGGCAATTATAGAGTG
CTCATTGCCTCTCTGATTTCTAGGTCTAGGAGATCCAGGTCATTATGATT
GTTAGGTCCCATAGGTTGGATTGGTTTTTATGCGGTCATGCAACGTGATG
AATTGAACAGAAAGTTGGGGACAACAACAAGATGTCCAAATAATTTCATT
TTGAACTGATGCATTCTTCCAATGATGATTTACTTTCTGTACAGCTTCAA
TTACTGTATAATAAATCGTCTTTGATAGTGTTAGGGATATAGGATGTCAT
TCTGCATGCCCTTGGACCCACTACTGTTTGCAGTGATTGAAATGATGCGG
CAAATGCTTTTTTGGACTTCGTTCTGGCCTAGAAATTATGGTATTCTTTT
ACCCGTCATTTTACTGTCG back to topCoding sequence (CDS) from alignment at Chr09:18456337..18462405+ >Phvul.009G120800.1_Pv_G19833_v2.1 ID=Phvul.009G120800.1_Pv_G19833_v2.1; Name=Phvul.009G120800.1; organism=Phaseolus vulgaris; type=CDS; length=972bp; location=Sequence derived from: Chr09:18456337..18462405+ (Phaseolus vulgaris ATGGCGAGAGTTGGTAAGTTCCGGAACAAGTCTCAAGGTCGGAAGGCATC ACCATGTCTTTTGTCTTGTGCAAGAAAAAATCTAAAAGATGTTCATGTAA AGAAGAGCTCTTCTAAAACATCGGAGAAGAAAGATTGGGAAGATACAACC TGCTCTGTATGTATGGAGGTCCCCCACAATTCCATCCTCCTGCTTTGTTC TTCTTATGACAAGGGTTGTCGCCCTTATATGTGTGCTACTAGTAATCGCT ATTCAAACTGTTTTGAACAATATAAAAAGGCATATACTAAAGCAACATCT GTTCGAAGTTTGCAGCTAGAAGCAAACAATTCAAATTTTGATTTAAGCAC AGGTGAATCTAAAGACAATACTGAAGTTCCTGAGCTTCTTTGCCCCCTTT GTCGCCGGCAGGTGAAAGGTTGGACAGTGGTTGAAGCCGCAAGGAAGTCT CTGAATGCCAAGAAAAGAAGTTGCATGCAAGATGACTGCTCTTTTGTGGG GAATTACAAGGAGCTTAGGAAACATGTTAGGTCTAAGCATCCATTTGCAC GACCCCGAGAAGTGGACCCAATAAGAGAAGAAAAATGGAAGAGGTTTGAG TGTGAAAGAGAACGAAATGATGTTATTAGCACAATTTTATCTTCAACACC AGGGGCTATGGTACTGGGGGATTATGTGCTGGAGCCAAATGACCATGCCT TTTATAGTGATGAGTATGATTCAGATGATGAATATCTAGAGGATGATTTT TTCTCAGTGAGGTCCATTGGCTTGGGGAGAGCTGGGCACTTTTTGCCGAA CATTAGATATAATCAGGATCGTGCTGCTGATTCTTTCGATGTTGATCGGT TTGGTTTTCAGAGTGTTGCATCTGCAGGTTCTGCTGCTGTCTCGGGTCGC AGACTACACAGGATACTGTTAGGAAGGACTAGAAGACGACGGAGGCATAG AATAGCAAATGCAAGAAGGTAA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
Term | Definition |
IPR012866 | DUF1644 |
|