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Transcript Overview
Name | Phvul.010G126100.1 |
Unique Name | Phvul.010G126100.1_Pv_G19833_v2.1 |
Type | mRNA |
Organism | Phaseolus vulgaris (Common bean) |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
Phvul.010G126100.1 | Phvul.010G126100.1_Pv_G19833_v2.1-protein | Phaseolus vulgaris | polypeptide |
Phvul.010G126100.1_Pv_G19833_v2.1 | Phvul.010G126100.1_Pv_G19833_v2.1 | Phaseolus vulgaris | polypeptide |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Phvul.010G126100.1.v2.1.CDS.4 | Phvul.010G126100.1.v2.1.CDS.4_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
Phvul.010G126100.1.v2.1.CDS.3 | Phvul.010G126100.1.v2.1.CDS.3_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
Phvul.010G126100.1.v2.1.CDS.2 | Phvul.010G126100.1.v2.1.CDS.2_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
Phvul.010G126100.1.v2.1.CDS.1 | Phvul.010G126100.1.v2.1.CDS.1_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Phvul.010G126100.1.v2.1.three_prime_UTR.1 | Phvul.010G126100.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1 | Phaseolus vulgaris | three_prime_UTR |
The following five_prime_UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
Phvul.010G126100.1.v2.1.five_prime_UTR.2 | Phvul.010G126100.1.v2.1.five_prime_UTR.2_Pv_G19833_v2.1 | Phaseolus vulgaris | five_prime_UTR |
Phvul.010G126100.1.v2.1.five_prime_UTR.1 | Phvul.010G126100.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1 | Phaseolus vulgaris | five_prime_UTR |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR010341 | Protein of unknown function DUF936, plant | PFAM | PF06075 | DUF936 | coord: 213..370 e-value: 2.7E-23 score: 82.8 coord: 4..175 e-value: 2.1E-68 score: 231.9 coord: 380..531 e-value: 1.8E-25 score: 90.0 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 126..153 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 126..152 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 380..415 |
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.010G126100.1_Pv_G19833_v2.1 >Phvul.010G126100.1_Pv_G19833_v2.1 ID=Phvul.010G126100.1_Pv_G19833_v2.1; Name=Phvul.010G126100.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=537bp MASLIPGVLLKLLQSMDSNVKFNGEYRSVLLQVISIVPAITGSELWPNQG FFLKISDSSHSTYVSLSKEDNELILNNKLQLGQFFYVDGIEAGTPVPILV DVRPVPGRHPFIGNPKDLMQMLEASEGPVQSDNPRINRSKSMNSTTSKES RSPWHKIVIKEDKSAVASRYMQGVRIPTSNVNVYDAIEERKGNDFQNDVD STKKVGSAKVKLQKLQALSVNTTRTLLLETSSPRQRVAQCNTEHVMSASK RISTKHNSTKLETTNLNVLPSSEDKSWSTEAVPWSSLPAKLLRPGKELLR RKHLASMVVVEAQKEVTAATVLVKFLSMFSNICTSAASENPHVTLNKFFS FQELMMNHSNGTSTVPHTDKLLNLYKTSSPTETDKNYKKSVLVPGKSSSK SPKYSPDLSDTEKQEWATGNGLEEINELREVLLMETKLWFLKYLEKTLDF WFSTSSQEKRGKTSKETAGKKKNHANHIALTLSHLKQANEWLEKLRNTTN LENEEMFETVDRLKQRVYSCLLLHVDSAAFALESRA* back to topmRNA from alignment at Chr10:40707859..40711163- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Phvul.010G126100.1_Pv_G19833_v2.1 ID=Phvul.010G126100.1_Pv_G19833_v2.1; Name=Phvul.010G126100.1; organism=Phaseolus vulgaris; type=mRNA; length=3305bp; location=Sequence derived from: Chr10:40707859..40711163- (Phaseolus vulgaris TGGAAGCCTACTGTTTCCGCTTGTCCTTTCTGGTCTGCAGAATTTCTTAC
AACCCTTTCACAAACAATGCCTCTTTGATTCTTCTCTTACACACTTCTCG
CGTCACTTCATGCTTCAACTCTGAATTAGGTAACATGATACATATACATA
CATATGCAAACACATACAAACAAATTCACATGCAAACACACACGTGTATG
TTATCTGTATATCAAAATGTTTTTCCAATGTTTTTTGGCTTACTTTTTAT
CTATCATGTGAGATTAAATCTTGCTGCTTAATTTTCTTGTTTTGAATATC
ACATTAAACGATTAACTATTCCAGTTAGGTACATCTTTGAAACAATATTT
TAGCACGTTAGGGGATTAGAAAACTAAAAAATTGCTTGCATTTTACACCT
TAAACGGCTTAGGAGTTAGGACCTATATAAAAAGTAAGTCCATTTGAACA
GAAGTATCTACCAAAATGTATTAATTTTGCTTGATGTGCAGCTCCTTGCA
TTCAATATTCCAGACATGCAAATTTGTTGACCCCTGAATAATATAATACA
TAAAACAGAAGAAAGTGAAGAGGCATGGCATCCCTTATTCCGGGGGTTCT
ACTGAAGCTTCTCCAAAGTATGGATTCTAATGTGAAATTTAATGGGGAAT
ATAGATCAGTCCTTCTGCAAGTGATCAGCATTGTGCCTGCAATAACTGGA
TCTGAATTATGGCCTAACCAAGGTTTCTTCCTGAAAATCTCTGACTCTTC
TCATTCAACTTATGTCTCACTCTCAAAGGAAGACAACGAGCTTATCTTGA
ACAATAAGTTGCAGCTTGGACAATTCTTTTATGTGGATGGCATAGAGGCG
GGAACACCAGTCCCTATTCTTGTTGATGTTAGACCAGTTCCTGGCCGGCA
CCCTTTTATTGGAAATCCTAAGGATTTAATGCAAATGTTAGAGGCATCAG
AGGGTCCAGTGCAATCTGATAATCCTAGAATTAATCGTTCAAAATCCATG
AACTCAACAACATCCAAAGAAAGCAGAAGTCCATGGCACAAAATTGTTAT
TAAAGAGGACAAGTCTGCTGTTGCATCCAGGTACATGCAGGGTGTTAGAA
TTCCAACCTCAAATGTGAATGTGTATGATGCTATTGAAGAAAGAAAAGGA
AATGATTTTCAGAATGATGTAGATAGTACTAAGAAGGTGGGATCTGCAAA
AGTAAAACTGCAAAAATTACAGGTCAGGTATGATTCTTATCTTTGATAAG
CAGATTGCTAGTTAAACAAGTTTCATATTTGGTTACTGGGAAATCATGTG
CATTATGTGTCTAGCATTGCTCTAACCAGTGCAAGATTTTTTCTACAAAA
ATAATTAAATAATTCAAAGATGCAGGAATGCACATTGGCATAAAGGGAAT
ATTCATTTTGGGAAAAAATGTTCAGTGTTCATAACAAGTTTAGTGCTGAA
CTGTATGCTGTGCTAAATGCTAAATAGGTAATAGTGAAAATTAAAAGATT
GAGAATGATTTGTTTTAGCATCACAGGCACTCTCAGTGAATACAACTCGT
ACTCTACTACTTGAAACATCTTCACCAAGGCAGAGGGTTGCTCAATGTAA
CACTGAACATGTCATGTCAGCTTCAAAGCGCATATCAACCAAACATAATT
CTACTAAACTGGAAACTACAAACTTGAATGTTTTGCCAAGCAGTGAAGAT
AAAAGCTGGAGCACAGAGGCAGTTCCATGGTCCTCTTTGCCAGCCAAACT
TTTGAGGCCTGGAAAGGTACATTGCAGTTTTTTCTCTCCTTTGAATGATA
GATATTACTGTAAAATTTTGATGCAATTTGTTAATCTTGTTCTGTAATCA
AAATTGGAGTTTCATCTCAGTATATAATAGAGGATTCCATCAAATATTAT
TGTGTATTGTAGAAGTGAAACTCCAAAACTAATTAGAGAACAGTACCATA
AATACTTATAATACTATATTTAAATTTATTGCTTCATCTCAATGTCTTTT
TTTAGTAAAGCAAAGCTGTCTCAGCAGTTACATGATTTTTTGTTGACAAT
CATACAAATTTCCACATTTTACTAGGAATTGCTTAGAAGGAAACATCTAG
CCTCCATGGTTGTTGTAGAAGCTCAGAAAGAAGTTACTGCTGCTACAGTC
CTTGTCAAGTTTTTAAGGTACATTATGCATTTTGTCTTAATATTGTCAAA
TTACTTACTCAAAGTTTATGTACTTGGGAAATTTTAAAAATTATACAAAA
AAATTGTTGCTATATTACTACATTATAAAGATGTTAAAACTTTCTTTGAG
TTTTCTAGCATTTGGACCTACACGGCATAATATAATCTCAGCCAAGGTAG
TAATAATTGGTAACCAAGCAAAATCTACCACAAATATTATTTTAGCAGAC
AACTCAGACTGACTTGTAAATCATTATTTTTATGTAGGGACTAAAATATA
AAGTTTTTTCATTGGATTAAATTTTTAAAAATGGTGTCAAATACAAGGAT
AACATTTTTTCCATTTAAATTCTTCAGTTATTTTGCCTCTCTTTCCTTTT
CAGTATGTTTTCCAACATCTGCACTTCAGCTGCATCAGAGAATCCTCATG
TCACACTGAACAAGTTTTTTTCTTTCCAAGAACTCATGATGAACCATTCA
AATGGTACAAGCACAGTTCCACACACGGATAAATTACTTAATCTATATAA
AACTTCTTCTCCTACAGAAACAGATAAAAATTACAAGAAATCAGTTTTAG
TGCCTGGGAAAAGTTCATCAAAGTCTCCAAAATACTCACCAGATTTATCC
GACACTGAGAAACAAGAATGGGCCACAGGAAATGGTCTAGAAGAGATAAA
TGAACTGAGAGAGGTCCTTTTGATGGAAACAAAATTATGGTTTTTGAAAT
ACTTGGAAAAAACATTGGATTTCTGGTTTTCCACAAGCTCCCAAGAGAAG
AGGGGAAAGACGAGTAAGGAGACTGCAGGGAAGAAAAAGAATCATGCAAA
TCATATAGCTCTCACGTTGTCACACCTTAAGCAAGCAAATGAATGGTTAG
AGAAACTGAGAAACACTACAAATTTGGAAAATGAAGAGATGTTTGAAACT
GTTGACAGATTGAAGCAAAGAGTTTATTCTTGTTTGCTCCTACATGTTGA
CTCTGCTGCATTTGCTTTGGAAAGCCGAGCTTGATTATTGGATACTGATA
TGTTTTAAAGCATCATATTCTATTTAAAGTTATTTATAAGTTAAATTATC
TTATTGTGGTTGAGACAGACATGGTTAATGGAAAATGTAATGTGATATGA
TATGA back to topCoding sequence (CDS) from alignment at Chr10:40707859..40711163- >Phvul.010G126100.1_Pv_G19833_v2.1 ID=Phvul.010G126100.1_Pv_G19833_v2.1; Name=Phvul.010G126100.1; organism=Phaseolus vulgaris; type=CDS; length=1611bp; location=Sequence derived from: Chr10:40707859..40711163- (Phaseolus vulgaris ATGGCATCCCTTATTCCGGGGGTTCTACTGAAGCTTCTCCAAAGTATGGA TTCTAATGTGAAATTTAATGGGGAATATAGATCAGTCCTTCTGCAAGTGA TCAGCATTGTGCCTGCAATAACTGGATCTGAATTATGGCCTAACCAAGGT TTCTTCCTGAAAATCTCTGACTCTTCTCATTCAACTTATGTCTCACTCTC AAAGGAAGACAACGAGCTTATCTTGAACAATAAGTTGCAGCTTGGACAAT TCTTTTATGTGGATGGCATAGAGGCGGGAACACCAGTCCCTATTCTTGTT GATGTTAGACCAGTTCCTGGCCGGCACCCTTTTATTGGAAATCCTAAGGA TTTAATGCAAATGTTAGAGGCATCAGAGGGTCCAGTGCAATCTGATAATC CTAGAATTAATCGTTCAAAATCCATGAACTCAACAACATCCAAAGAAAGC AGAAGTCCATGGCACAAAATTGTTATTAAAGAGGACAAGTCTGCTGTTGC ATCCAGGTACATGCAGGGTGTTAGAATTCCAACCTCAAATGTGAATGTGT ATGATGCTATTGAAGAAAGAAAAGGAAATGATTTTCAGAATGATGTAGAT AGTACTAAGAAGGTGGGATCTGCAAAAGTAAAACTGCAAAAATTACAGGC ACTCTCAGTGAATACAACTCGTACTCTACTACTTGAAACATCTTCACCAA GGCAGAGGGTTGCTCAATGTAACACTGAACATGTCATGTCAGCTTCAAAG CGCATATCAACCAAACATAATTCTACTAAACTGGAAACTACAAACTTGAA TGTTTTGCCAAGCAGTGAAGATAAAAGCTGGAGCACAGAGGCAGTTCCAT GGTCCTCTTTGCCAGCCAAACTTTTGAGGCCTGGAAAGGAATTGCTTAGA AGGAAACATCTAGCCTCCATGGTTGTTGTAGAAGCTCAGAAAGAAGTTAC TGCTGCTACAGTCCTTGTCAAGTTTTTAAGTATGTTTTCCAACATCTGCA CTTCAGCTGCATCAGAGAATCCTCATGTCACACTGAACAAGTTTTTTTCT TTCCAAGAACTCATGATGAACCATTCAAATGGTACAAGCACAGTTCCACA CACGGATAAATTACTTAATCTATATAAAACTTCTTCTCCTACAGAAACAG ATAAAAATTACAAGAAATCAGTTTTAGTGCCTGGGAAAAGTTCATCAAAG TCTCCAAAATACTCACCAGATTTATCCGACACTGAGAAACAAGAATGGGC CACAGGAAATGGTCTAGAAGAGATAAATGAACTGAGAGAGGTCCTTTTGA TGGAAACAAAATTATGGTTTTTGAAATACTTGGAAAAAACATTGGATTTC TGGTTTTCCACAAGCTCCCAAGAGAAGAGGGGAAAGACGAGTAAGGAGAC TGCAGGGAAGAAAAAGAATCATGCAAATCATATAGCTCTCACGTTGTCAC ACCTTAAGCAAGCAAATGAATGGTTAGAGAAACTGAGAAACACTACAAAT TTGGAAAATGAAGAGATGTTTGAAACTGTTGACAGATTGAAGCAAAGAGT TTATTCTTGTTTGCTCCTACATGTTGACTCTGCTGCATTTGCTTTGGAAA GCCGAGCTTGA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
Term | Definition |
IPR010341 | DUF936_pln |
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