Phvul.010G132400.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Phvul.010G132400.1 vs. DB:Swiss
Match: VPS2A_ARATH (Vacuolar protein sorting-associated protein 2 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=VPS2.1 PE=1 SV=2) HSP 1 Score: 317.775 bits (813), Expect = 6.379e-110 Identity = 192/226 (84.96%), Postives = 204/226 (90.27%), Query Frame = 1 Query: 1 MSFLFGNRKTPAELLRENKRMLDKSIREIERERQGLQNQEKKLIVEIKKNAKQGQMGAVKMMAKDLIRTRHQIDKFYKLKSQLQGVSLRIQTLKSTQVMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMELVSEVMXXXXXXXXXXXXXXXXXXNLVNQVLDEIGIDINSELLXXXXXXXXXXXXXXXXRVAQAESTGHEDS-GIDDDLQARLNNLRKM 675 M+ +FG RKTPAELLRENKRMLDKSIREIERERQGLQ QEKKLI EIKK AKQGQMGAVK+MAKDLIRTRHQI+KFYKLKSQLQGVSLRIQTLKSTQ MGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKME+VSEVM DAIDDALEGDEEEEETE+LV+QVLDEIGIDIN EL+ A + PAA N+V QAE+TG EDS GID DLQARL+NLRKM Sbjct: 2 MNSIFGKRKTPAELLRENKRMLDKSIREIERERQGLQTQEKKLINEIKKTAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSLRIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVSEVMGDAIDDALEGDEEEEETEDLVSQVLDEIGIDINQELV--NAPSGAVAVPAAKNKVVQAEATGAEDSGGIDSDLQARLDNLRKM 225
BLAST of Phvul.010G132400.1 vs. DB:Swiss
Match: CM2A2_DICDI (Charged multivesicular body protein 2a homolog 2 OS=Dictyostelium discoideum OX=44689 GN=chmp2a2 PE=3 SV=1) HSP 1 Score: 217.624 bits (553), Expect = 1.085e-70 Identity = 116/178 (65.17%), Postives = 149/178 (83.71%), Query Frame = 1 Query: 7 FLFGNRKTPAELLRENKRMLDKSIREIERERQGLQNQEKKLIVEIKKNAKQGQMGAVKMMAKDLIRTRHQIDKFYKLKSQLQGVSLRIQTLKSTQVMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMELVSEVMXXXXXXXXXXXXXXXXXXNLVNQVLDEIGIDINSELL 540 FLFG +KTP E+LREN+R L+KS+REI+RER LQNQEKK+I++IKK AKQGQM + K+MAKDL+RTR+ I KFY++K+QLQ VSLRIQTL+STQ M EAMKGVTKAM MNRQMNLP KIM EFE+Q++KM++ E+M D +D +E D EEE+++ ++NQVLDEIGID+ S+L+ Sbjct: 2 FLFGKQKTPKEVLRENQRNLNKSMREIDRERVALQNQEKKIILDIKKMAKQGQMNSAKIMAKDLVRTRYHIQKFYEMKTQLQAVSLRIQTLQSTQAMAEAMKGVTKAMITMNRQMNLPQFTKIMMEFEQQSDKMDMKEEMMNDTMDQVMEQDGEEEQSQEILNQVLDEIGIDLASQLV 179
BLAST of Phvul.010G132400.1 vs. DB:Swiss
Match: CHM2A_DANRE (Charged multivesicular body protein 2a OS=Danio rerio OX=7955 GN=chmp2a PE=2 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 2.244e-60 Identity = 116/224 (51.79%), Postives = 165/224 (73.66%), Query Frame = 1 Query: 1 MSFLFGNRKTPAELLRENKRMLDKSIREIERERQGLQNQEKKLIVEIKKNAKQGQMGAVKMMAKDLIRTRHQIDKFYKLKSQLQGVSLRIQTLKSTQVMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMELVSEVMXXXXXXXXXXXXXXXXXXNLVNQVLDEIGIDINSELLXXXXXXXXXXXXXXXXRVAQAESTGHEDSGIDDDLQARLNNLRK 672 M LFG RKTP E+LR+N+R L++++R+++RERQ L+ QEKK+I +IKK AKQGQM AVK+MAKDL+RTR + KF +++ +Q VSL+IQTLKS M +AMKGVTKAM MNRQ+ LP +QKIM EFERQ+E M++ E+M DAIDDA+ +++EEE++ +V+QVLDE+G+ ++ EL + + + A + A+ + T + D DL+ RLNNLR+ Sbjct: 1 MESLFGRRKTPEEMLRQNQRALNRAMRDLDRERQRLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFERQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLSDEL--SNLPATGGSLSVAAGKKAEPQPTLAD---ADADLEERLNNLRR 219
BLAST of Phvul.010G132400.1 vs. DB:Swiss
Match: CHM2A_XENTR (Charged multivesicular body protein 2a OS=Xenopus tropicalis OX=8364 GN=chmp2a PE=2 SV=1) HSP 1 Score: 191.43 bits (485), Expect = 3.661e-60 Identity = 106/179 (59.22%), Postives = 144/179 (80.45%), Query Frame = 1 Query: 1 MSFLFGNRKTPAELLRENKRMLDKSIREIERERQGLQNQEKKLIVEIKKNAKQGQMGAVKMMAKDLIRTRHQIDKFYKLKSQLQGVSLRIQTLKSTQVMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMELVSEVMXXXXXXXXXXXXXXXXXXNLVNQVLDEIGIDINSEL 537 M FLFG RKTP E+LR+N+R L+K++RE++RERQ L+ QEKK+I +IKK AKQGQM AVK+MAKDL+RTR + KF +++ +Q VSL+IQTLKS M +AMKGVTKAM MNRQ+ LP +QKIM EFE+Q+E M++ E+M DAIDDA+ +++EEE++ +V+QVLDE+G+ + EL Sbjct: 1 MEFLFGRRKTPEEMLRQNQRALNKAMREMDRERQKLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLTDEL 179
BLAST of Phvul.010G132400.1 vs. DB:Swiss
Match: CHM2A_XENLA (Charged multivesicular body protein 2a OS=Xenopus laevis OX=8355 GN=chmp2a PE=2 SV=1) HSP 1 Score: 191.43 bits (485), Expect = 3.701e-60 Identity = 106/179 (59.22%), Postives = 144/179 (80.45%), Query Frame = 1 Query: 1 MSFLFGNRKTPAELLRENKRMLDKSIREIERERQGLQNQEKKLIVEIKKNAKQGQMGAVKMMAKDLIRTRHQIDKFYKLKSQLQGVSLRIQTLKSTQVMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMELVSEVMXXXXXXXXXXXXXXXXXXNLVNQVLDEIGIDINSEL 537 M FLFG RKTP ELLR+N+R L++++RE++RERQ L+ QEKK+I +IKK AKQGQM AVK+MAKDL+RTR + KF +++ +Q VSL+IQTLKS M +AMKGVTKAM MNRQ+ LP +QKIM EFE+Q+E M++ E+M DAIDDA+ +++EEE++ +V+QVLDE+G+ + EL Sbjct: 1 MEFLFGRRKTPEELLRQNQRALNRAMRELDRERQKLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLTDEL 179
BLAST of Phvul.010G132400.1 vs. DB:Swiss
Match: CHM2A_HUMAN (Charged multivesicular body protein 2a OS=Homo sapiens OX=9606 GN=CHMP2A PE=1 SV=1) HSP 1 Score: 191.43 bits (485), Expect = 4.158e-60 Identity = 107/179 (59.78%), Postives = 143/179 (79.89%), Query Frame = 1 Query: 1 MSFLFGNRKTPAELLRENKRMLDKSIREIERERQGLQNQEKKLIVEIKKNAKQGQMGAVKMMAKDLIRTRHQIDKFYKLKSQLQGVSLRIQTLKSTQVMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMELVSEVMXXXXXXXXXXXXXXXXXXNLVNQVLDEIGIDINSEL 537 M LFG RKTP ELLR+N+R L++++RE++RERQ L+ QEKK+I +IKK AKQGQM AV++MAKDL+RTR + KF +++ +Q VSL+IQTLKS M +AMKGVTKAMG MNRQ+ LP +QKIM EFERQ E M++ E+M DAIDDA+ +E+EEE++ +V+QVLDE+G+ + EL Sbjct: 1 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDEL 179
BLAST of Phvul.010G132400.1 vs. DB:Swiss
Match: CHM2A_MOUSE (Charged multivesicular body protein 2a OS=Mus musculus OX=10090 GN=Chmp2a PE=1 SV=1) HSP 1 Score: 191.43 bits (485), Expect = 4.790e-60 Identity = 107/179 (59.78%), Postives = 143/179 (79.89%), Query Frame = 1 Query: 1 MSFLFGNRKTPAELLRENKRMLDKSIREIERERQGLQNQEKKLIVEIKKNAKQGQMGAVKMMAKDLIRTRHQIDKFYKLKSQLQGVSLRIQTLKSTQVMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMELVSEVMXXXXXXXXXXXXXXXXXXNLVNQVLDEIGIDINSEL 537 M LFG RKTP ELLR+N+R L++++RE++RERQ L+ QEKK+I +IKK AKQGQM AV++MAKDL+RTR + KF +++ +Q VSL+IQTLKS M +AMKGVTKAMG MNRQ+ LP +QKIM EFERQ E M++ E+M DAIDDA+ +E+EEE++ +V+QVLDE+G+ + EL Sbjct: 1 MDLLFGRRKTPEELLRQNQRALNRAMRELDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAVSLKIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDEL 179
BLAST of Phvul.010G132400.1 vs. DB:Swiss
Match: CHM2A_CHICK (Charged multivesicular body protein 2a OS=Gallus gallus OX=9031 GN=CHMP2A PE=2 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 1.685e-51 Identity = 104/179 (58.10%), Postives = 141/179 (78.77%), Query Frame = 1 Query: 1 MSFLFGNRKTPAELLRENKRMLDKSIREIERERQGLQNQEKKLIVEIKKNAKQGQMGAVKMMAKDLIRTRHQIDKFYKLKSQLQGVSLRIQTLKSTQVMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMELVSEVMXXXXXXXXXXXXXXXXXXNLVNQVLDEIGIDINSEL 537 M LFG RKTP ELLR+N+R L +++RE++RERQ L+ QEKK+I++IKK AKQGQM AVK+MAKDL+RTR + KF +++ +Q VSL+IQTLKS M AMKGVTKAM MNRQ+ LP +QKIM EFE+Q M++ E+M DAIDDA+ +++EEE++ +V+QVLDE+G+++ EL Sbjct: 1 MDLLFGRRKTPEELLRQNQRALTRAMRELDRERQKLEAQEKKIIIDIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFITMRANVQAVSLKIQTLKSNNSMALAMKGVTKAMATMNRQLKLPQIQKIMMEFEKQAGIMDMKEELMNDAIDDAMGDEDDEEESDAVVSQVLDELGLNLTDEL 179
BLAST of Phvul.010G132400.1 vs. DB:Swiss
Match: DID4_YEAST (DOA4-independent degradation protein 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=DID4 PE=1 SV=2) HSP 1 Score: 158.688 bits (400), Expect = 4.330e-47 Identity = 102/225 (45.33%), Postives = 151/225 (67.11%), Query Frame = 1 Query: 7 FLFGNRKTPAELLRENKRMLDKSIREIERERQGLQNQEKKLIVEIKKNAKQGQMGAVKMMAKDLIRTRHQIDKFYKLKSQLQGVSLRIQTLKSTQVMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMELVSEVMXXXXXXXX-XXXXXXXXXXNLVNQVLDEIGIDINSELLXXXXXXXXXXX-XXXXXRVAQAESTGHEDSG-IDDDLQARLNNLRK 672 ++FG TP E L++N+R L+++ RE+ERE++ L+ Q+KKL+ EIKK+AK GQ+ A K+ AKDL+RTR+ I KF +K+QLQ +SLRIQ ++S+ M +M T + MNR MNLP LQ+I EFE+Q++ M E M++AID+ + + +E+EE + +VN+VLDEIG+D+NS+L + P + + + G E G DDDLQARLN L+K Sbjct: 6 WVFGKNVTPQERLKKNQRALERTQRELEREKRKLELQDKKLVSEIKKSAKNGQVAAAKVQAKDLVRTRNYIQKFDNMKAQLQAISLRIQAVRSSDQMTRSMSEATGLLAGMNRTMNLPQLQRISMEFEKQSDLMGQRQEFMDEAIDNVMGDEVDEDEEADEIVNKVLDEIGVDLNSQLQSTPQNLVSNAPIAETAMGIPEPIGAGSEFHGNPDDDLQARLNTLKK 230
BLAST of Phvul.010G132400.1 vs. DB:Swiss
Match: DID4_SCHPO (ESCRT-III complex subunit did4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=did4 PE=3 SV=2) HSP 1 Score: 134.42 bits (337), Expect = 5.261e-38 Identity = 79/178 (44.38%), Postives = 123/178 (69.10%), Query Frame = 1 Query: 4 SFLFGNRKTPAELLRENKRMLDKSIREIERERQGLQNQEKKLIVEIKKNAKQGQMGAVKMMAKDLIRTRHQIDKFYKLKSQLQGVSLRIQTLKSTQVMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMELVSEVMXXXXXXXXXXXXXXXXXXNLVNQVLDEIGIDINSEL 537 S+LFG K+P E LR ++R L ++ RE++RER L +E+ LI EIK +AK G GA ++ A+DL+R R+ K K+QLQ +SLR+QT+++++ M ++M+G T+ + MN+ MN+P++ +I Q+FER+NE ME E M D D +++EEE + LVN+VLDEIG+D++ L Sbjct: 5 SWLFGGGKSPQEQLRAHQRSLGRAERELDRERTKLDQRERALIQEIKGSAKAGNTGAARIQARDLMRLRNSRKKMMNAKTQLQAISLRLQTMRTSEQMMQSMRGATRLLTGMNKSMNIPAMARITQQFERENEIMEQRQE-MIDENMDDALEEDDEEEADELVNKVLDEIGVDLSQGL 181 The following BLAST results are available for this feature:
BLAST of Phvul.010G132400.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.010G132400.1_Pv_G19833_v2.1 >Phvul.010G132400.1_Pv_G19833_v2.1 ID=Phvul.010G132400.1_Pv_G19833_v2.1; Name=Phvul.010G132400.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=226bpback to top mRNA from alignment at Chr10:41436317..41438160- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Phvul.010G132400.1_Pv_G19833_v2.1 ID=Phvul.010G132400.1_Pv_G19833_v2.1; Name=Phvul.010G132400.1; organism=Phaseolus vulgaris; type=mRNA; length=1844bp; location=Sequence derived from: Chr10:41436317..41438160- (Phaseolus vulgarisback to top Coding sequence (CDS) from alignment at Chr10:41436317..41438160- >Phvul.010G132400.1_Pv_G19833_v2.1 ID=Phvul.010G132400.1_Pv_G19833_v2.1; Name=Phvul.010G132400.1; organism=Phaseolus vulgaris; type=CDS; length=678bp; location=Sequence derived from: Chr10:41436317..41438160- (Phaseolus vulgarisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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