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Transcript Overview
| Name | Phvul.010G157800.2 |
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| Unique Name | Phvul.010G157800.2_Pv_G19833_v2.1 |
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| Type | mRNA |
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| Organism | Phaseolus vulgaris (Common bean) |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Phvul.010G157800.2 | Phvul.010G157800.2_Pv_G19833_v2.1-protein | Phaseolus vulgaris | polypeptide |
| Phvul.010G157800.2_Pv_G19833_v2.1 | Phvul.010G157800.2_Pv_G19833_v2.1 | Phaseolus vulgaris | polypeptide |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Phvul.010G157800.2.v2.1.five_prime_UTR.1 | Phvul.010G157800.2.v2.1.five_prime_UTR.1_Pv_G19833_v2.1 | Phaseolus vulgaris | five_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Phvul.010G157800.2.v2.1.CDS.1 | Phvul.010G157800.2.v2.1.CDS.1_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
| Phvul.010G157800.2.v2.1.CDS.2 | Phvul.010G157800.2.v2.1.CDS.2_Pv_G19833_v2.1 | Phaseolus vulgaris | CDS |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| Phvul.010G157800.2.v2.1.three_prime_UTR.1 | Phvul.010G157800.2.v2.1.three_prime_UTR.1_Pv_G19833_v2.1 | Phaseolus vulgaris | three_prime_UTR |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR013761 | Sterile alpha motif/pointed domain superfamily | GENE3D | 1.10.150.50 | | coord: 1..68
e-value: 6.8E-8
score: 34.0 |
| IPR013761 | Sterile alpha motif/pointed domain superfamily | SUPERFAMILY | 47769 | SAM/Pointed domain | coord: 6..67 |
| None | No IPR available | CDD | cd09487 | SAM_superfamily | coord: 2..62
e-value: 8.60681E-9
score: 48.3897 |
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.010G157800.2_Pv_G19833_v2.1 >Phvul.010G157800.2_Pv_G19833_v2.1 ID=Phvul.010G157800.2_Pv_G19833_v2.1; Name=Phvul.010G157800.2_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=218bp
MDWFSWLSKTCLEPTLVYEYGLTFAHNELEEEDILYFNHEFLMSMGISIA
KHRLEILKLARKVKGKRAPRPVARLMVAIKRTKRCLANYFRTFVSCEEES
SALVVVPSSRTRPYGTRWKSHVMKRNKRLMVAKQERLLLTNGSPNTVVHG
LDTFTTPMVYHSHKEQKMEADDDDEYWSSAATEEIRRREKMEVPHSLSMY
QGDVHFLLKVVTLDSEF* back to topmRNA from alignment at Chr10:43671668..43673103+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >Phvul.010G157800.2_Pv_G19833_v2.1 ID=Phvul.010G157800.2_Pv_G19833_v2.1; Name=Phvul.010G157800.2; organism=Phaseolus vulgaris; type=mRNA; length=1436bp; location=Sequence derived from: Chr10:43671668..43673103+ (Phaseolus vulgaris
TTTTCAATCTCTCTTTACCACTCTTTATATAAATTCTCCACTCTTGAAGT
TGAAGAAGATCACACACAACACAACACAACACAAGAGTGAGTCATATCCC
TTCAAACCAACCATGGATTGGTTCTCATGGCTTTCCAAAACATGCCTTGA
GCCAACCTTAGTGTATGAGTATGGCCTTACTTTTGCACACAATGAGCTTG
AAGAAGAAGACATACTCTACTTCAACCATGAGTTTCTCATGAGCATGGGG
ATCTCCATAGCCAAACACAGGCTAGAGATTCTGAAGCTTGCAAGGAAAGT
GAAGGGAAAGAGGGCACCACGCCCTGTGGCAAGGCTCATGGTGGCGATCA
AGAGGACAAAGAGGTGCTTGGCCAATTACTTTAGGACGTTTGTGAGCTGT
GAAGAAGAGTCATCAGCACTTGTTGTGGTGCCATCATCAAGAACAAGGCC
TTATGGGACAAGATGGAAGAGTCATGTGATGAAGAGGAACAAAAGGTTGA
TGGTGGCTAAGCAAGAGAGGCTCTTGCTCACAAATGGAAGTCCTAACACT
GTGGTGCATGGTCTTGATACTTTTACCACTCCCATGGTTTACCATTCCCA
CAAGGAGCAAAAAATGGAAGCAGATGATGATGATGAATACTGGTCTTCAG
CTGCTACAGAAGAAATCAGGTGGGATACCCTGTTTCAGGATCTAAAGCCC
AATTGATAAAAACTTTTCCTTTTTCTAATTTGGACCCCTTTTTGGGGTGA
ATTCTATCATCCCTTATTTTTTATATTACTTGGTGAGAGATGGGTTTTTT
TGGGTTCTTCCACCATACTTTTGTTGTTTTTTTTTATCAATGGTGTGGGT
CACGCGGATGGGTAGCTTTAGCATGCACCTATCTGTTTCTGTAATGAGAT
TGTCTACTTTGCTTTTTGTAGGGTCATGTGATGCCCTTTAGCTTTTTTGA
TAGGGCAAAATTTTCCTTAGATTAGCGTGTTTATGGGGGGAGAATTATTT
GAGGTAGGTGTTTAGTTATGCTACTTTAGCAACTTTGAATCCCCAATTGA
AAAGTTTGGCTTGACTTTGGGTTTGTGCAATGTAATGTCTTGTGGTTGAC
AATACACACTTTAACAGAGTATATTTGATAGTTAATACAATACTTCCTAC
ATTGGCTTTCTTCCATTTGAACTAATTCTTGATTGATTGAGACTTTTTTC
CCAATGAGGAAATGATTGTTTTACTTCATTTTTGTGTGAACCCTTCAACA
CATAGAAGAAGGGAAAAGATGGAGGTCCCCCACTCCCTTAGCATGTACCA
AGGTGATGTCCATTTCTTACTCAAAGTGGTGACCTTAGATTCTGAGTTCT
GAGATGGTGGCATCTTTACTTCAGAAACACCATGACCTCAACATTGAGGA
CCCCATTTTTGTTCTTGTATATATTGATTAGTGTAG back to topCoding sequence (CDS) from alignment at Chr10:43671668..43673103+ >Phvul.010G157800.2_Pv_G19833_v2.1 ID=Phvul.010G157800.2_Pv_G19833_v2.1; Name=Phvul.010G157800.2; organism=Phaseolus vulgaris; type=CDS; length=654bp; location=Sequence derived from: Chr10:43671668..43673103+ (Phaseolus vulgaris
ATGGATTGGTTCTCATGGCTTTCCAAAACATGCCTTGAGCCAACCTTAGT
GTATGAGTATGGCCTTACTTTTGCACACAATGAGCTTGAAGAAGAAGACA
TACTCTACTTCAACCATGAGTTTCTCATGAGCATGGGGATCTCCATAGCC
AAACACAGGCTAGAGATTCTGAAGCTTGCAAGGAAAGTGAAGGGAAAGAG
GGCACCACGCCCTGTGGCAAGGCTCATGGTGGCGATCAAGAGGACAAAGA
GGTGCTTGGCCAATTACTTTAGGACGTTTGTGAGCTGTGAAGAAGAGTCA
TCAGCACTTGTTGTGGTGCCATCATCAAGAACAAGGCCTTATGGGACAAG
ATGGAAGAGTCATGTGATGAAGAGGAACAAAAGGTTGATGGTGGCTAAGC
AAGAGAGGCTCTTGCTCACAAATGGAAGTCCTAACACTGTGGTGCATGGT
CTTGATACTTTTACCACTCCCATGGTTTACCATTCCCACAAGGAGCAAAA
AATGGAAGCAGATGATGATGATGAATACTGGTCTTCAGCTGCTACAGAAG
AAATCAGAAGAAGGGAAAAGATGGAGGTCCCCCACTCCCTTAGCATGTAC
CAAGGTGATGTCCATTTCTTACTCAAAGTGGTGACCTTAGATTCTGAGTT
CTGA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR013761 | SAM/pointed_sf |
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