Phvul.011G106000.1
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Phvul.011G106000.1 vs. DB:Swiss
Match: TRABD_MOUSE (TraB domain-containing protein OS=Mus musculus OX=10090 GN=Trabd PE=1 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 5.749e-24 Identity = 82/280 (29.29%), Postives = 140/280 (50.00%), Query Frame = 1
Query: 352 LSRNVLVLTCESAAEGGVCDVYLVGTAHVSEESSREVQAIVNILKPQAVFLELCSSRVAVLTLQNLKVPTMGEMVTMLK-----KKHNMFEVLYGWFLAKIAS----KLEVFPGSEFRVAYEEAIKYG-GRVILGDRPVQITLRRTWSKMPLWHKTKLLYSLLFQAVFLPSSDDLNKMLKEMDDSDMLTLVIQEMSKEFPTLMETLVHERDQYMSSTLLKXXXXXXXXXXXXGKGH---------------LQGIKKHWKQPVVMKDLMTIPSVEPAISA 1116
L R V L E + VY+VGTAH S++S R+V + ++P V +ELC RV++L + + + V++ K +++ + L L K+++ +L + PG EFR A++EA K + LGDRP+ +T +R + + W K KL + L F + + S DD+ + ++ D+L ++ EM EFP L T+V ERD Y++ L + A A + + GI+K+W + ++++MT+P P+IS
Sbjct: 59 LPRTVTQLVAEDGSR-----VYVVGTAHFSDDSKRDVVKTIREVQPDVVVVELCQYRVSMLKMDERTLLREAKEVSLEKLQQAVRQNGLMSGLMQMLLLKVSAHITEQLGMAPGGEFREAFKEASKVPFCKFHLGDRPIPVTFKRAIAALSFWQKVKLAWGLCFLSDPI-SKDDVERCKQK----DLLEQMMAEMIGEFPDLHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEKNWSTDLNIQEIMTVPP--PSISG 326
BLAST of Phvul.011G106000.1 vs. DB:Swiss
Match: TRABD_HUMAN (TraB domain-containing protein OS=Homo sapiens OX=9606 GN=TRABD PE=1 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 1.075e-23 Identity = 81/280 (28.93%), Postives = 136/280 (48.57%), Query Frame = 1
Query: 352 LSRNVLVLTCESAAEGGVCDVYLVGTAHVSEESSREVQAIVNILKPQAVFLELCSSRVAVLTL---------QNLKVPTMGEMVTMLKKKHNMFEVLYGWFLAKIASKLEVFPGSEFRVAYEEAIKYG-GRVILGDRPVQITLRRTWSKMPLWHKTKLLYSLLFQAVFLPSSDDLNKMLKEMDDSDMLTLVIQEMSKEFPTLMETLVHERDQYMSSTLLKXXXXXXXXXXXXGKGH---------------LQGIKKHWKQPVVMKDLMTIPSVEPAISA 1116
L R V L E + VY+VGTAH S++S R+V + ++P V +ELC RV++L + Q L + + + V + ++L A I +L + PG EFR A++EA K + LGDRP+ +T +R + + W K +L + L F + + S DD+ + ++ D+L ++ EM EFP L T+V ERD Y++ L + A A + + GI+K+W + ++++MT+P P++S
Sbjct: 60 LPRTVTQLVAEDGSR-----VYVVGTAHFSDDSKRDVVKTIREVQPDVVVVELCQYRVSMLKMDESTLLREAQELSLEKLQQAVRQNGLMSGLMQMLLLKVSAHITEQLGMAPGGEFREAFKEASKVPFCKFHLGDRPIPVTFKRAIAALSFWQKVRLAWGLCFLSDPI-SKDDVERCKQK----DLLEQMMAEMIGEFPDLHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGHVPGIEKNWSTDLNIQEIMTVPP--PSVSG 327
BLAST of Phvul.011G106000.1 vs. DB:Swiss
Match: TRABD_BOVIN (TraB domain-containing protein OS=Bos taurus OX=9913 GN=TRABD PE=2 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 1.548e-23 Identity = 69/208 (33.17%), Postives = 112/208 (53.85%), Query Frame = 1
Query: 382 ESAAEGGVCDVYLVGTAHVSEESSREVQAIVNILKPQAVFLELCSSRVAVLTLQNLKVPTMGEMVTMLKKKH---------NMFEVLYGWFLAKIASKLEVFPGSEFRVAYEEAIKYG-GRVILGDRPVQITLRRTWSKMPLWHKTKLLYSLLFQAVFLPSSDDLNKMLKEMDDSDMLTLVIQEMSKEFPTLMETLVHERDQYMSSTL 975
E AE G VY+VGTAH S++S R+V + ++P V +ELC RV++L + + + +++ K + + ++L A I +L V PG EFR A++EA + + LGDRP+ +T +R + + LW K KL + L F + + S DD+ + ++ D+L ++ EM EFP L T+V ERD Y++ L
Sbjct: 66 ELVAEDG-SRVYVVGTAHFSDDSKRDVVKTIREVQPDVVVVELCQYRVSMLKMDERTLLREAKEISLEKLQQAIRQNGVASGLMQMLLLKVSAHITEQLGVAPGGEFREAFKEASRVPFCKFHLGDRPIPVTFKRAIAALSLWQKVKLAWGLCFLSDPI-SKDDVERCKQK----DLLEQMMAEMVGEFPDLHRTIVSERDVYLTYML 267
BLAST of Phvul.011G106000.1 vs. DB:Swiss
Match: Y1365_METJA (Uncharacterized protein MJ1365 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ1365 PE=4 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 5.607e-20 Identity = 75/224 (33.48%), Postives = 119/224 (53.12%), Query Frame = 1
Query: 406 CDVYLVGTAHVSEESSREVQAIVNILKPQAVFLELCSSRVAVLTLQNLKVPTMGEMVTMLKKKHNMFEVLYGWFLA----KIASKLEVFPGSEFRVAYEEAIKYGGRVILGDRPVQITLRRTWSKMPLWHKTKLLYSLL--FQAVFLPSSDDLNKMLKEMDDSDMLTLVIQEMSKEFPTLMETLVHERDQYMSSTLLKXXXXXXXXXXXXGKGHLQGIKKHWKQ 1059
CD+YL+GTAHVS++S EV+ I++ + P+ + +EL R L + + K+ N + LA KI + PGSE + A E A KYG + L DR + ITL R +M K K+ + LL + D LN M+K + + +++E+S PT+ E LV ERD++M+ L +++ +S+VAVVG GH++GI ++ K+
Sbjct: 17 CDIYLIGTAHVSKDSIEEVEKIISSVSPEGIAVELDDRRFFSLITN----EEKKVDLKKVLKEGNFLKFFIYLILANSQKKIGESFGIKPGSEMKKAIEIASKYGLPIYLIDRDIDITLSRLMDRMTFKEKMKIFWELLNSDEEDLELDDDLLNDMVK---NPEKFIKLLKEIS---PTIYEVLVDERDRFMAKRLFELSKNKNSLVAVVGAGHVEGIVRYLKK 230 The following BLAST results are available for this feature:
BLAST of Phvul.011G106000.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot) Total hits: 4
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.011G106000.1_Pv_G19833_v2.1 >Phvul.011G106000.1_Pv_G19833_v2.1 ID=Phvul.011G106000.1_Pv_G19833_v2.1; Name=Phvul.011G106000.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=399bpback to top mRNA from alignment at Chr11:12900483..12905121+ Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Phvul.011G106000.1_Pv_G19833_v2.1 ID=Phvul.011G106000.1_Pv_G19833_v2.1; Name=Phvul.011G106000.1; organism=Phaseolus vulgaris; type=mRNA; length=4639bp; location=Sequence derived from: Chr11:12900483..12905121+ (Phaseolus vulgarisback to top Coding sequence (CDS) from alignment at Chr11:12900483..12905121+ >Phvul.011G106000.1_Pv_G19833_v2.1 ID=Phvul.011G106000.1_Pv_G19833_v2.1; Name=Phvul.011G106000.1; organism=Phaseolus vulgaris; type=CDS; length=1197bp; location=Sequence derived from: Chr11:12900483..12905121+ (Phaseolus vulgarisback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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