Phvul.L002346.1

Transcript Overview
NamePhvul.L002346.1
Unique NamePhvul.L002346.1_Pv_G19833_v2.1
TypemRNA
OrganismPhaseolus vulgaris (Common bean)
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
scaffold_17supercontigscaffold_17:178714..180113 -Phaseolus vulgaris G19833 genome v2.1n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Phaseolus vulgaris G19833 genome v2.12019-09-17
InterProScan: Phaseolus vulgaris G19833 genome v2.12019-10-18
BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot2019-10-18
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
pvpvL008Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
pspvL446Pisum sativum Cameor genome v1aPisum sativum
pvvuR293Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pvvuR294Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
pspvL813Pisum sativum Cameor genome v1aPisum sativum
pspvL814Pisum sativum Cameor genome v1aPisum sativum
caipvL0574Cicer arietinum ICC 4958 genome v2Cicer arietinum
caipvL0806Cicer arietinum ICC 4958 genome v2Cicer arietinum
crpvL511Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
crpvL719Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
capvL447Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
capvL593Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ccpvL0029Cajanus cajan Asha genome v1.0Cajanus cajan
ccpvL0262Cajanus cajan Asha genome v1.0Cajanus cajan
anpvL0037Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0268Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anpvL0856Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
aspvL040Vigna angularis Jingnong 6 genome v1.1Vigna angularis
pvzwsR276Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvzwsR277Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
pvvfhR315Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvvfhR317Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
pvtifR309Vicia faba cv. Tiffany genome v1.0Vicia faba
pvtifR310Vicia faba cv. Tiffany genome v1.0Vicia faba
pvtifR311Vicia faba cv. Tiffany genome v1.0Vicia faba
pvvrvR275Vigna radiata cv. VC1973A genome v6.0Vigna radiata
pvvuaR258Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvuaR259Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
pvvssR354Vicia sativa cv. Studenica genome v1.0Vicia sativa
pvvssR355Vicia sativa cv. Studenica genome v1.0Vicia sativa
canpvL421Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
canpvL573Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
avjpvL265Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
avjpvL494Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
carpvL435Cicer arietinum
carpvL576Cicer arietinum
ccapvL041Cajanus cajan cv. Asha genome v2.0Cajanus cajan
ccapvL808Cajanus cajan cv. Asha genome v2.0Cajanus cajan
pvvumR344Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvumR345Vigna umbellata FF25 genome v1.0Vigna umbellata
pvvvaR335Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR336Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvvaR337Vicia villosa cv. AU Merit genome v1.0Vicia villosa
pvvasR349Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvasR350Vigna angularis cv. Shumari genome v1.a1Vigna angularis
pvvstR345Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvvstR346Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
pvpvfR272Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvpvfR273Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
pvvunR269Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
pvvunR270Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
rna-XM_004502233.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
rna-XM_014637847.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
evm.model.Chr03.3744Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
evm.model.Chr01.2326Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigst.04G290400.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
rna-TanjilR_33009Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
XM_058879898.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vfaba.Tiffany.R1.6g045360.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Va03G085380.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vigun01g247800.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vfaba.Tiffany.R1.6g098800.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-TanjilR_21823Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Psat7g077040.1Pisum sativum Cameor genome v1aPisum sativum
Vum_04G03232.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vfaba.Hedin2.R1.6g054400.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vigun03g167200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vfaba.Hedin2.R1.2g110880.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
rna-KK1_025139Cajanus cajan Asha genome v1.0Cajanus cajan
Cc_v2.0_00080.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
rna-KK1_019866Cajanus cajan Asha genome v1.0Cajanus cajan
Cr_15498.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Ca_08505Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Ca_16377.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Vigun01g247800.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-XM_004504354.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vigan.04G429600.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vfaba.Tiffany.R1.2g091120.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Psat07G0195700-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
jg30429.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigun03g167200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Psat05G0289100-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
XM_058879896.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Psat5g096520.1Pisum sativum Cameor genome v1aPisum sativum
Ca_13614.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Ca_11353Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
XM_058931107.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Cr_13015.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
jg53544.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Cc_v2.0_22039.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
PvulFLAVERTChr01.1001755Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Phvul.001G262300.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
PvulFLAVERTChr02.976Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Phvul.L002346Phvul.L002346_Pv_G19833_v2.1Phaseolus vulgarisgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Phvul.L002346.1Phvul.L002346.1_Pv_G19833_v2.1-proteinPhaseolus vulgarispolypeptide
Phvul.L002346.1_Pv_G19833_v2.1Phvul.L002346.1_Pv_G19833_v2.1Phaseolus vulgarispolypeptide


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.L002346.1.v2.1.three_prime_UTR.1Phvul.L002346.1.v2.1.three_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgaristhree_prime_UTR


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.L002346.1.v2.1.five_prime_UTR.1Phvul.L002346.1.v2.1.five_prime_UTR.1_Pv_G19833_v2.1Phaseolus vulgarisfive_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
Phvul.L002346.1.v2.1.CDS.1Phvul.L002346.1.v2.1.CDS.1_Pv_G19833_v2.1Phaseolus vulgarisCDS


Homology
BLAST of Phvul.L002346.1 vs. DB:Swiss
Match: MT127_ARATH (Probable methyltransferase At1g27930 OS=Arabidopsis thaliana OX=3702 GN=At1g27930 PE=1 SV=1)

HSP 1 Score: 341.658 bits (875), Expect = 2.182e-117
Identity = 169/283 (59.72%), Postives = 211/283 (74.56%), Query Frame = 1
Query:   22 KNRWPVWLMGTLCIIGATLFIASFIQTSENSL-LCSISTAQQQLTGT-----SKSMQLKAILHYATSQVVPQQSLSEITVTFDVLQALNRPANFLVFGLGHDSLMWAGLNPGGTTLFLEEDPKWVQTVLKDAPGLRAHTVHYRTQLREADHLLSSYRSEPACSPATATLRGNERCKLALQNLPDEVYSREWDLIMIDAPKGYFPEAPGRMAAIFSAAVMARDRKGSGVTHVFLHDVDRKVEKVYAEEFLCRKQLVKGVGRLWHFEIPPKANHSRDDA---RFC 843
            + RW +  +    ++G  L   SFI+ ++ +L LCS ++A+ +         +  +QL+AI+HYATS VVPQQ+L+EI+++F++L+ L  PANFLVFGLG DSLMWA LNP G TLFLEED +W Q V KD+P LRAH V YRTQL++AD LL SY++EP C PA + LRGNE+CKLAL  LPDE Y  EWDL+M+DAPKGYF EAPGRMAAIFSAAVMAR+RK  GVTHVFLHDV+R+VEK +AEEFLCRK  V   GRLWHF IPP A ++  D+   RFC
Sbjct:    8 EKRWIITGVLLAGLVGGALLFTSFIRAADETLFLCSTASAKSRAVAAAADYEATPIQLQAIVHYATSNVVPQQNLAEISISFNILKKLA-PANFLVFGLGRDSLMWASLNPRGKTLFLEEDLEWFQKVTKDSPFLRAHHVRYRTQLQQADSLLRSYKTEPKCFPAKSYLRGNEKCKLALTGLPDEFYDTEWDLLMVDAPKGYFAEAPGRMAAIFSAAVMARNRKKPGVTHVFLHDVNRRVEKTFAEEFLCRKYRVNAAGRLWHFAIPPAAANATIDSGDYRFC 289          
BLAST of Phvul.L002346.1 vs. DB:Swiss
Match: GXM1_ARATH (Glucuronoxylan 4-O-methyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=GXM1 PE=1 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 4.338e-67
Identity = 107/227 (47.14%), Postives = 150/227 (66.08%), Query Frame = 1
Query:  178 KAILHYATSQVVPQQSLSEITVTFDVLQALNRPANFLVFGLGHDSLMWAGLNPGGTTLFLEEDPKWVQTVLKDAPGLRAHTVHYRTQLREADHLLSSYRSEPACSPATATLRGNER---CKLALQNLPDEVYSREWDLIMIDAPKGYFPEAPGRMAAIFSAAVMARDRKGSGVTHVFLHDVDRKVEKVYAEEFLCRKQLVKGVGRLWHFEIPPKANHSRDDAR--FC 843
            +A++HY+TS + PQQ+L EI V+  VL     P NFLVFGLGHDSLMW+ LN GG T+FLEED  W++ + +  P L ++ V Y +++ +AD+L+   +  P C     T  G+ R   C+LAL+ LP E+Y   WDLIM+DAP GY+ EAPGRM AI++A +MAR+RK  G T VF+HDV+R++E  +++ FLC   + K  GRL HF IP   + S  ++   FC
Sbjct:   62 QALIHYSTSVITPQQTLKEIAVSSRVL-GKKSPCNFLVFGLGHDSLMWSSLNYGGRTVFLEEDEAWIKQIKRRFPMLESYHVTYDSKVNQADNLIEVGKG-PEC-----TAIGDPRYSMCQLALKGLPAEIYETGWDLIMVDAPTGYYDEAPGRMTAIYTAGMMARNRKQGGETDVFVHDVNREIEDKFSKAFLCEGYMKKQEGRLRHFIIPSYRDGSESESNRPFC 281          
BLAST of Phvul.L002346.1 vs. DB:Swiss
Match: GXM2_ARATH (Glucuronoxylan 4-O-methyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=GXM2 PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 1.085e-65
Identity = 103/221 (46.61%), Postives = 146/221 (66.06%), Query Frame = 1
Query:  142 QQLTGTSKSMQLKAILHYATSQVVPQQSLSEITVTFDVLQALNRPANFLVFGLGHDSLMWAGLNPGGTTLFLEEDPKWVQTVLKDAPGLRAHTVHYRTQLREADHLLSSYRSEPACSPATATLRGNERCKLALQNLPDEVYSREWDLIMIDAPKGYFPEAPGRMAAIFSAAVMARDRKGSGVTHVFLHDVDRKVEKVYAEEFLCRKQLVKGVGRLWHFEIP 804
            QQ T    S+   A++HY TS++ PQQ+  E++V+  VL     P NFLVFGLGHDSLMWA LN GG TLFLEED  W++TV K  P L ++ V Y T++++++ L+   R+E     A +  R + +C L+L+  P +VY  +WD+IM+DAP GY  EAPGRM+AI++A ++AR+R   G T VF+HD++R VE  ++  FLC   + +  GRL HF IP
Sbjct:   56 QQCTKLPTSLS-DALVHYVTSEITPQQTFDEVSVSKRVLDK-KSPCNFLVFGLGHDSLMWASLNHGGRTLFLEEDEAWIETVTKKFPNLESYHVVYDTKVKDSNKLMELKRTEDC--KAVSDPR-DSKCALSLKGFPADVYETQWDVIMVDAPTGYHDEAPGRMSAIYTAGLLARNRYDGGETDVFVHDINRPVEDEFSVAFLCGGYMKEQQGRLRHFNIP 271          
BLAST of Phvul.L002346.1 vs. DB:Swiss
Match: GXM3_ARATH (Glucuronoxylan 4-O-methyltransferase 3 OS=Arabidopsis thaliana OX=3702 GN=GXM3 PE=1 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 3.426e-65
Identity = 109/234 (46.58%), Postives = 150/234 (64.10%), Query Frame = 1
Query:  142 QQLTGTSKSMQLKAILHYATSQVVPQQSLSEITVTFDVLQALNRPANFLVFGLGHDSLMWAGLNPGGTTLFLEEDPKWVQTVLKDAPGLRAHTVHYRTQLREADHLLSSYRSEPACSPATATLRGNERCKLALQNLPDEVYSREWDLIMIDAPKGYFPEAPGRMAAIFSAAVMARDRKGSGVTHVFLHDVDRKVEKVYAEEFLCRKQLVKGVGRLWHFEIPPKANHSRDDARFC 843
            QQ T    S+   A++HY TS V PQQ+  E++V+  VL     P NFLVFGLGHDSLMWA LN GG TLF+EED  W+  V K  P L ++ V Y T+++++D L+   RSE   S +      N +C LAL++ P + Y  +WDLIM+DAP GY  EAPGRM+AI++A ++AR+R+  G T VF+HDV+R VE  ++  FLC+  + +  GRL HF IP  ++ +R    FC
Sbjct:   64 QQCTKMPLSLS-DALVHYVTSNVTPQQTFDEVSVSKRVLDK-KSPCNFLVFGLGHDSLMWASLNHGGRTLFIEEDQAWIAIVTKKFPNLESYHVVYDTKVKDSDKLMELGRSEECRSVSDPR---NSKCDLALKDFPADFYETKWDLIMVDAPTGYHEEAPGRMSAIYTAGLLARNRE-DGETDVFVHDVNRPVEDEFSATFLCKGYMREQNGRLRHFTIP--SHRARAGRPFC 289          
BLAST of Phvul.L002346.1 vs. DB:Swiss
Match: IX15L_ARATH (Protein IRX15-LIKE OS=Arabidopsis thaliana OX=3702 GN=IRX15-L PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.329e-48
Identity = 99/283 (34.98%), Postives = 155/283 (54.77%), Query Frame = 1
Query:   37 VWLMG-----TLCIIGATLFIASFIQTSENSLLCSISTAQQQLTGTSKSMQL-----KAILHYAT-SQVVPQQSLSEITVTFDVLQALNRPANFLVFGLGHDSLMWAGLNPGGTTLFLEEDPKWVQTVLKDAPGLRAHTVHYRTQLREADHLLSSYR--SEPACSPATATLRGNERCKLALQNLPDEVYSREWDLIMIDAPKGYFPEAPGRMAAIFSAAVMARDRKGSG-VTHVFLHDVDRKVEKVYAEEFLCRKQLVKGVGRLWHFEIPPKANHSRDDARFC 843
            +WL+      T+  +   L+    I +S+N+   ++S+A      T+   QL      A+LHYA+ S      S  E+    DVL+  + P N LVFGL H++L+W  LN  G T+F+EE+  +     +  P +    V Y T+ REA  L+S+ +  +   C P    L  +  CKL L +LP+ VY  +WD+I++D P+G   + PGRM++IF+AAV+AR +KG    THVF+HD  R VE++  +EFLCR+ LV+    L H+ +       ++  +FC
Sbjct:   27 LWLLAFVSFFTIAFLLTLLYTTDSIISSKNNS-ATVSSAVNSAVTTATISQLPTTAINAMLHYASRSNDSYHMSYGEMKSISDVLRRCSPPCNLLVFGLTHETLLWKSLNHNGRTVFIEENRYYAAYFEEIHPEIEVFDVQYTTKAREARELVSAVKEAARNECRPVQNLLFSD--CKLGLNDLPNHVYDVDWDVILVDGPRGDGGDVPGRMSSIFTAAVLARSKKGGNPKTHVFVHDYYRDVERLCGDEFLCRENLVESNDLLAHYVLEKM---DKNSTQFC 303          
BLAST of Phvul.L002346.1 vs. DB:Swiss
Match: IRX15_ARATH (Protein IRREGULAR XYLEM 15 OS=Arabidopsis thaliana OX=3702 GN=IRX15 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.223e-45
Identity = 86/227 (37.89%), Postives = 129/227 (56.83%), Query Frame = 1
Query:  175 LKAILHYAT-SQVVPQQSLSEITVTFDVLQALNRPANFLVFGLGHDSLMWAGLNPGGTTLFLEEDPKWVQTVLKDAPGLRAHTVHYRTQLREADHLLSSYRSEPA--CSPATATLRGNERCKLALQNLPDEVYSREWDLIMIDAPKGYFPEAPGRMAAIFSAAVMARDRK-GSGVTHVFLHDVDRKVEKVYAEEFLCRKQLVKGVGRLWHFEIPPKANHSRDDARFC 843
            + A+LHYA+ S      S  E+    DVL+    P N LVFGL H++L+W  LN  G T+F+EE+  +     +  P +    V Y T+  EA  L+++ +      C P    L  +  CKL L +LP+ VY  +WD+I +D P+G   E PGRM++IF+AAV+AR +K G+  THVF+HD  R VE++  +EFLCR+ LV+    L H+ +       ++  +FC
Sbjct:   89 INALLHYASRSNDSFHMSYGEMKSISDVLRRCAPPCNLLVFGLTHETLLWKSLNHNGRTVFIEENRYYAAYFEEIHPEIDVFDVQYTTKAHEAGELVTAAKEAAGNECRPVQNLLFSD--CKLGLNDLPNHVYDVDWDVIFVDGPRGDAHEGPGRMSSIFTAAVLARSKKGGTPKTHVFVHDYYRDVERLCGDEFLCRENLVESNDLLAHYVLDKM---DKNSTKFC 310          
The following BLAST results are available for this feature:
BLAST of Phvul.L002346.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot)
Total hits: 6
Match NameE-valueIdentityDescription
MT127_ARATH2.182e-11759.72Probable methyltransferase At1g27930 OS=Arabidopsi... [more]
GXM1_ARATH4.338e-6747.14Glucuronoxylan 4-O-methyltransferase 1 OS=Arabidop... [more]
GXM2_ARATH1.085e-6546.61Glucuronoxylan 4-O-methyltransferase 2 OS=Arabidop... [more]
GXM3_ARATH3.426e-6546.58Glucuronoxylan 4-O-methyltransferase 3 OS=Arabidop... [more]
IX15L_ARATH1.329e-4834.98Protein IRX15-LIKE OS=Arabidopsis thaliana OX=3702... [more]
IRX15_ARATH3.223e-4537.89Protein IRREGULAR XYLEM 15 OS=Arabidopsis thaliana... [more]
back to top
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006514IRX15/IRX15L/IGXMTIGRFAMTIGR01627TIGR01627coord: 59..281
e-value: 6.9E-73
score: 243.0
IPR021148Polysaccharide biosynthesis domainPFAMPF04669Polysacc_synt_4coord: 78..265
e-value: 6.6E-72
score: 241.1

Sequences
The following sequences are available for this feature:

protein sequence of Phvul.L002346.1_Pv_G19833_v2.1

>Phvul.L002346.1_Pv_G19833_v2.1 ID=Phvul.L002346.1_Pv_G19833_v2.1; Name=Phvul.L002346.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=282bp
MQGNERMKNRWPVWLMGTLCIIGATLFIASFIQTSENSLLCSISTAQQQL
TGTSKSMQLKAILHYATSQVVPQQSLSEITVTFDVLQALNRPANFLVFGL
GHDSLMWAGLNPGGTTLFLEEDPKWVQTVLKDAPGLRAHTVHYRTQLREA
DHLLSSYRSEPACSPATATLRGNERCKLALQNLPDEVYSREWDLIMIDAP
KGYFPEAPGRMAAIFSAAVMARDRKGSGVTHVFLHDVDRKVEKVYAEEFL
CRKQLVKGVGRLWHFEIPPKANHSRDDARFC*
back to top

mRNA from alignment at scaffold_17:178714..180113-

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>Phvul.L002346.1_Pv_G19833_v2.1 ID=Phvul.L002346.1_Pv_G19833_v2.1; Name=Phvul.L002346.1; organism=Phaseolus vulgaris; type=mRNA; length=1400bp; location=Sequence derived from: scaffold_17:178714..180113- (Phaseolus vulgaris
TAAGTCCGAAAACCCCATCTCATTTCCTATCCCTTAAAATAGACATTTCC AAACTCCTGGTAGCTCTGTCCATCAACGAATGCAAGGGAACGAGAGGATG AAGAACCGATGGCCGGTGTGGCTAATGGGGACATTATGCATAATCGGAGC CACGCTCTTTATCGCCAGTTTCATCCAAACCTCCGAGAACAGTCTTCTAT GCTCAATATCCACAGCACAGCAGCAGTTAACCGGAACTTCCAAATCGATG CAGCTCAAAGCGATACTTCACTACGCCACCTCGCAGGTTGTCCCGCAACA GTCTCTTTCGGAGATCACCGTCACCTTCGATGTCCTCCAGGCCCTTAACC GCCCCGCCAACTTCCTCGTCTTTGGGCTGGGCCACGATTCCCTTATGTGG GCAGGCCTCAACCCAGGCGGCACCACGCTCTTCCTCGAGGAGGACCCTAA GTGGGTCCAGACCGTCCTCAAGGACGCGCCGGGCCTCCGAGCCCACACCG TCCACTACCGAACCCAGCTCCGCGAAGCCGACCACCTCCTCTCGTCTTAT CGCTCCGAGCCTGCCTGCTCGCCGGCCACCGCCACGCTCCGCGGCAACGA GCGGTGCAAGCTGGCACTCCAGAACCTCCCGGACGAGGTGTACTCGCGGG AGTGGGATCTAATCATGATCGATGCGCCGAAGGGGTACTTCCCTGAGGCG CCAGGGCGCATGGCGGCGATATTTTCGGCGGCGGTGATGGCTCGGGACAG GAAAGGCTCCGGCGTGACGCACGTGTTCCTGCACGATGTGGATCGGAAGG TGGAGAAGGTTTACGCCGAGGAGTTTCTCTGCCGGAAGCAGTTGGTCAAA GGTGTTGGCAGACTCTGGCACTTCGAGATTCCTCCGAAGGCTAATCACTC TCGTGACGACGCGCGTTTCTGTTAGGTTTCCCTTCTATTTTTATTTTATT TTATTTTATTTTTCTGTGCAGTGAATACTGAAGAACAGCGAGAGGACTAT ATCTATATCTTATTATAGCTTTACCATTTTAGTTTCATTTTTTACCTTTT CATTAATTTGGTCACCTAAAAAAGGCCAATTATTACAGGTGGACGGTGGC CATGTTGATGGTTCAGTCGCACTCTACCGACACTTCACGAGAAACTTCTG AATTCTGATTCATCCCTTTTTCGTTCGCTTATTCTGAAATGAATTTGAGT TTAAATCAAACACAGATTAATTTAAATGGTGTTTTAGCTCAATTTTGTTT CATTCAAACTTTTTTTAAATGGTTCAAGCCATTGGAACTTTTTTTATGTT TTAATATAACAACCTTTTTTAAATTTTACTTTCTTGGTTTAATGAGATTA AAACGTCCATGTAAAAATTTTGATGGAAAAAAGTTAGGTATGCTTGTGTA
back to top

Coding sequence (CDS) from alignment at scaffold_17:178714..180113-

>Phvul.L002346.1_Pv_G19833_v2.1 ID=Phvul.L002346.1_Pv_G19833_v2.1; Name=Phvul.L002346.1; organism=Phaseolus vulgaris; type=CDS; length=846bp; location=Sequence derived from: scaffold_17:178714..180113- (Phaseolus vulgaris
ATGCAAGGGAACGAGAGGATGAAGAACCGATGGCCGGTGTGGCTAATGGG
GACATTATGCATAATCGGAGCCACGCTCTTTATCGCCAGTTTCATCCAAA
CCTCCGAGAACAGTCTTCTATGCTCAATATCCACAGCACAGCAGCAGTTA
ACCGGAACTTCCAAATCGATGCAGCTCAAAGCGATACTTCACTACGCCAC
CTCGCAGGTTGTCCCGCAACAGTCTCTTTCGGAGATCACCGTCACCTTCG
ATGTCCTCCAGGCCCTTAACCGCCCCGCCAACTTCCTCGTCTTTGGGCTG
GGCCACGATTCCCTTATGTGGGCAGGCCTCAACCCAGGCGGCACCACGCT
CTTCCTCGAGGAGGACCCTAAGTGGGTCCAGACCGTCCTCAAGGACGCGC
CGGGCCTCCGAGCCCACACCGTCCACTACCGAACCCAGCTCCGCGAAGCC
GACCACCTCCTCTCGTCTTATCGCTCCGAGCCTGCCTGCTCGCCGGCCAC
CGCCACGCTCCGCGGCAACGAGCGGTGCAAGCTGGCACTCCAGAACCTCC
CGGACGAGGTGTACTCGCGGGAGTGGGATCTAATCATGATCGATGCGCCG
AAGGGGTACTTCCCTGAGGCGCCAGGGCGCATGGCGGCGATATTTTCGGC
GGCGGTGATGGCTCGGGACAGGAAAGGCTCCGGCGTGACGCACGTGTTCC
TGCACGATGTGGATCGGAAGGTGGAGAAGGTTTACGCCGAGGAGTTTCTC
TGCCGGAAGCAGTTGGTCAAAGGTGTTGGCAGACTCTGGCACTTCGAGAT
TCCTCCGAAGGCTAATCACTCTCGTGACGACGCGCGTTTCTGTTAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR006514IRX15/GXM/AGM
IPR021148Polysacc_synth_dom
Vocabulary: Biological Process
TermDefinition
GO:0045492xylan biosynthetic process