Phvul.L002346.1
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of Phvul.L002346.1 vs. DB:Swiss
Match: MT127_ARATH (Probable methyltransferase At1g27930 OS=Arabidopsis thaliana OX=3702 GN=At1g27930 PE=1 SV=1) HSP 1 Score: 341.658 bits (875), Expect = 2.182e-117 Identity = 169/283 (59.72%), Postives = 211/283 (74.56%), Query Frame = 1 Query: 22 KNRWPVWLMGTLCIIGATLFIASFIQTSENSL-LCSISTAQQQLTGT-----SKSMQLKAILHYATSQVVPQQSLSEITVTFDVLQALNRPANFLVFGLGHDSLMWAGLNPGGTTLFLEEDPKWVQTVLKDAPGLRAHTVHYRTQLREADHLLSSYRSEPACSPATATLRGNERCKLALQNLPDEVYSREWDLIMIDAPKGYFPEAPGRMAAIFSAAVMARDRKGSGVTHVFLHDVDRKVEKVYAEEFLCRKQLVKGVGRLWHFEIPPKANHSRDDA---RFC 843 + RW + + ++G L SFI+ ++ +L LCS ++A+ + + +QL+AI+HYATS VVPQQ+L+EI+++F++L+ L PANFLVFGLG DSLMWA LNP G TLFLEED +W Q V KD+P LRAH V YRTQL++AD LL SY++EP C PA + LRGNE+CKLAL LPDE Y EWDL+M+DAPKGYF EAPGRMAAIFSAAVMAR+RK GVTHVFLHDV+R+VEK +AEEFLCRK V GRLWHF IPP A ++ D+ RFC Sbjct: 8 EKRWIITGVLLAGLVGGALLFTSFIRAADETLFLCSTASAKSRAVAAAADYEATPIQLQAIVHYATSNVVPQQNLAEISISFNILKKLA-PANFLVFGLGRDSLMWASLNPRGKTLFLEEDLEWFQKVTKDSPFLRAHHVRYRTQLQQADSLLRSYKTEPKCFPAKSYLRGNEKCKLALTGLPDEFYDTEWDLLMVDAPKGYFAEAPGRMAAIFSAAVMARNRKKPGVTHVFLHDVNRRVEKTFAEEFLCRKYRVNAAGRLWHFAIPPAAANATIDSGDYRFC 289
BLAST of Phvul.L002346.1 vs. DB:Swiss
Match: GXM1_ARATH (Glucuronoxylan 4-O-methyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=GXM1 PE=1 SV=1) HSP 1 Score: 213.386 bits (542), Expect = 4.338e-67 Identity = 107/227 (47.14%), Postives = 150/227 (66.08%), Query Frame = 1 Query: 178 KAILHYATSQVVPQQSLSEITVTFDVLQALNRPANFLVFGLGHDSLMWAGLNPGGTTLFLEEDPKWVQTVLKDAPGLRAHTVHYRTQLREADHLLSSYRSEPACSPATATLRGNER---CKLALQNLPDEVYSREWDLIMIDAPKGYFPEAPGRMAAIFSAAVMARDRKGSGVTHVFLHDVDRKVEKVYAEEFLCRKQLVKGVGRLWHFEIPPKANHSRDDAR--FC 843 +A++HY+TS + PQQ+L EI V+ VL P NFLVFGLGHDSLMW+ LN GG T+FLEED W++ + + P L ++ V Y +++ +AD+L+ + P C T G+ R C+LAL+ LP E+Y WDLIM+DAP GY+ EAPGRM AI++A +MAR+RK G T VF+HDV+R++E +++ FLC + K GRL HF IP + S ++ FC Sbjct: 62 QALIHYSTSVITPQQTLKEIAVSSRVL-GKKSPCNFLVFGLGHDSLMWSSLNYGGRTVFLEEDEAWIKQIKRRFPMLESYHVTYDSKVNQADNLIEVGKG-PEC-----TAIGDPRYSMCQLALKGLPAEIYETGWDLIMVDAPTGYYDEAPGRMTAIYTAGMMARNRKQGGETDVFVHDVNREIEDKFSKAFLCEGYMKKQEGRLRHFIIPSYRDGSESESNRPFC 281
BLAST of Phvul.L002346.1 vs. DB:Swiss
Match: GXM2_ARATH (Glucuronoxylan 4-O-methyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=GXM2 PE=1 SV=1) HSP 1 Score: 210.305 bits (534), Expect = 1.085e-65 Identity = 103/221 (46.61%), Postives = 146/221 (66.06%), Query Frame = 1 Query: 142 QQLTGTSKSMQLKAILHYATSQVVPQQSLSEITVTFDVLQALNRPANFLVFGLGHDSLMWAGLNPGGTTLFLEEDPKWVQTVLKDAPGLRAHTVHYRTQLREADHLLSSYRSEPACSPATATLRGNERCKLALQNLPDEVYSREWDLIMIDAPKGYFPEAPGRMAAIFSAAVMARDRKGSGVTHVFLHDVDRKVEKVYAEEFLCRKQLVKGVGRLWHFEIP 804 QQ T S+ A++HY TS++ PQQ+ E++V+ VL P NFLVFGLGHDSLMWA LN GG TLFLEED W++TV K P L ++ V Y T++++++ L+ R+E A + R + +C L+L+ P +VY +WD+IM+DAP GY EAPGRM+AI++A ++AR+R G T VF+HD++R VE ++ FLC + + GRL HF IP Sbjct: 56 QQCTKLPTSLS-DALVHYVTSEITPQQTFDEVSVSKRVLDK-KSPCNFLVFGLGHDSLMWASLNHGGRTLFLEEDEAWIETVTKKFPNLESYHVVYDTKVKDSNKLMELKRTEDC--KAVSDPR-DSKCALSLKGFPADVYETQWDVIMVDAPTGYHDEAPGRMSAIYTAGLLARNRYDGGETDVFVHDINRPVEDEFSVAFLCGGYMKEQQGRLRHFNIP 271
BLAST of Phvul.L002346.1 vs. DB:Swiss
Match: GXM3_ARATH (Glucuronoxylan 4-O-methyltransferase 3 OS=Arabidopsis thaliana OX=3702 GN=GXM3 PE=1 SV=1) HSP 1 Score: 209.149 bits (531), Expect = 3.426e-65 Identity = 109/234 (46.58%), Postives = 150/234 (64.10%), Query Frame = 1 Query: 142 QQLTGTSKSMQLKAILHYATSQVVPQQSLSEITVTFDVLQALNRPANFLVFGLGHDSLMWAGLNPGGTTLFLEEDPKWVQTVLKDAPGLRAHTVHYRTQLREADHLLSSYRSEPACSPATATLRGNERCKLALQNLPDEVYSREWDLIMIDAPKGYFPEAPGRMAAIFSAAVMARDRKGSGVTHVFLHDVDRKVEKVYAEEFLCRKQLVKGVGRLWHFEIPPKANHSRDDARFC 843 QQ T S+ A++HY TS V PQQ+ E++V+ VL P NFLVFGLGHDSLMWA LN GG TLF+EED W+ V K P L ++ V Y T+++++D L+ RSE S + N +C LAL++ P + Y +WDLIM+DAP GY EAPGRM+AI++A ++AR+R+ G T VF+HDV+R VE ++ FLC+ + + GRL HF IP ++ +R FC Sbjct: 64 QQCTKMPLSLS-DALVHYVTSNVTPQQTFDEVSVSKRVLDK-KSPCNFLVFGLGHDSLMWASLNHGGRTLFIEEDQAWIAIVTKKFPNLESYHVVYDTKVKDSDKLMELGRSEECRSVSDPR---NSKCDLALKDFPADFYETKWDLIMVDAPTGYHEEAPGRMSAIYTAGLLARNRE-DGETDVFVHDVNRPVEDEFSATFLCKGYMREQNGRLRHFTIP--SHRARAGRPFC 289
BLAST of Phvul.L002346.1 vs. DB:Swiss
Match: IX15L_ARATH (Protein IRX15-LIKE OS=Arabidopsis thaliana OX=3702 GN=IRX15-L PE=2 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 1.329e-48 Identity = 99/283 (34.98%), Postives = 155/283 (54.77%), Query Frame = 1 Query: 37 VWLMG-----TLCIIGATLFIASFIQTSENSLLCSISTAQQQLTGTSKSMQL-----KAILHYAT-SQVVPQQSLSEITVTFDVLQALNRPANFLVFGLGHDSLMWAGLNPGGTTLFLEEDPKWVQTVLKDAPGLRAHTVHYRTQLREADHLLSSYR--SEPACSPATATLRGNERCKLALQNLPDEVYSREWDLIMIDAPKGYFPEAPGRMAAIFSAAVMARDRKGSG-VTHVFLHDVDRKVEKVYAEEFLCRKQLVKGVGRLWHFEIPPKANHSRDDARFC 843 +WL+ T+ + L+ I +S+N+ ++S+A T+ QL A+LHYA+ S S E+ DVL+ + P N LVFGL H++L+W LN G T+F+EE+ + + P + V Y T+ REA L+S+ + + C P L + CKL L +LP+ VY +WD+I++D P+G + PGRM++IF+AAV+AR +KG THVF+HD R VE++ +EFLCR+ LV+ L H+ + ++ +FC Sbjct: 27 LWLLAFVSFFTIAFLLTLLYTTDSIISSKNNS-ATVSSAVNSAVTTATISQLPTTAINAMLHYASRSNDSYHMSYGEMKSISDVLRRCSPPCNLLVFGLTHETLLWKSLNHNGRTVFIEENRYYAAYFEEIHPEIEVFDVQYTTKAREARELVSAVKEAARNECRPVQNLLFSD--CKLGLNDLPNHVYDVDWDVILVDGPRGDGGDVPGRMSSIFTAAVLARSKKGGNPKTHVFVHDYYRDVERLCGDEFLCRENLVESNDLLAHYVLEKM---DKNSTQFC 303
BLAST of Phvul.L002346.1 vs. DB:Swiss
Match: IRX15_ARATH (Protein IRREGULAR XYLEM 15 OS=Arabidopsis thaliana OX=3702 GN=IRX15 PE=2 SV=1) HSP 1 Score: 158.303 bits (399), Expect = 3.223e-45 Identity = 86/227 (37.89%), Postives = 129/227 (56.83%), Query Frame = 1 Query: 175 LKAILHYAT-SQVVPQQSLSEITVTFDVLQALNRPANFLVFGLGHDSLMWAGLNPGGTTLFLEEDPKWVQTVLKDAPGLRAHTVHYRTQLREADHLLSSYRSEPA--CSPATATLRGNERCKLALQNLPDEVYSREWDLIMIDAPKGYFPEAPGRMAAIFSAAVMARDRK-GSGVTHVFLHDVDRKVEKVYAEEFLCRKQLVKGVGRLWHFEIPPKANHSRDDARFC 843 + A+LHYA+ S S E+ DVL+ P N LVFGL H++L+W LN G T+F+EE+ + + P + V Y T+ EA L+++ + C P L + CKL L +LP+ VY +WD+I +D P+G E PGRM++IF+AAV+AR +K G+ THVF+HD R VE++ +EFLCR+ LV+ L H+ + ++ +FC Sbjct: 89 INALLHYASRSNDSFHMSYGEMKSISDVLRRCAPPCNLLVFGLTHETLLWKSLNHNGRTVFIEENRYYAAYFEEIHPEIDVFDVQYTTKAHEAGELVTAAKEAAGNECRPVQNLLFSD--CKLGLNDLPNHVYDVDWDVIFVDGPRGDAHEGPGRMSSIFTAAVLARSKKGGTPKTHVFVHDYYRDVERLCGDEFLCRENLVESNDLLAHYVLDKM---DKNSTKFC 310 The following BLAST results are available for this feature:
BLAST of Phvul.L002346.1 vs. DB:Swiss
Analysis Date: 2019-10-18 (BLAST: Phaseolus vulgaris G19833 genome v2.1 vs. Swissprot) Total hits: 6
InterPro
Analysis Name: InterProScan: Phaseolus vulgaris G19833 genome v2.1
Date Performed: 2019-10-18
Sequences
The
following sequences are available for this feature:
protein sequence of Phvul.L002346.1_Pv_G19833_v2.1 >Phvul.L002346.1_Pv_G19833_v2.1 ID=Phvul.L002346.1_Pv_G19833_v2.1; Name=Phvul.L002346.1_Pv_G19833_v2.1; organism=Phaseolus vulgaris; type=polypeptide; length=282bpback to top mRNA from alignment at scaffold_17:178714..180113- Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>Phvul.L002346.1_Pv_G19833_v2.1 ID=Phvul.L002346.1_Pv_G19833_v2.1; Name=Phvul.L002346.1; organism=Phaseolus vulgaris; type=mRNA; length=1400bp; location=Sequence derived from: scaffold_17:178714..180113- (Phaseolus vulgarisback to top Coding sequence (CDS) from alignment at scaffold_17:178714..180113- >Phvul.L002346.1_Pv_G19833_v2.1 ID=Phvul.L002346.1_Pv_G19833_v2.1; Name=Phvul.L002346.1; organism=Phaseolus vulgaris; type=CDS; length=846bp; location=Sequence derived from: scaffold_17:178714..180113- (Phaseolus vulgarisback to top |