rna-TanjilR_24632
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_24632 vs. DB:Swiss
Match: GID1B_ARATH (Gibberellin receptor GID1B OS=Arabidopsis thaliana OX=3702 GN=GID1B PE=1 SV=1) HSP 1 Score: 509.22 bits (1310), Expect = 2.947e-178 Identity = 262/330 (79.39%), Postives = 293/330 (88.79%), Query Frame = 1 Query: 619 RVVPLNTWVLISNFKLAYNLLRRADGTFNRDLAEFLDRKVPANTIPVDGVFSFDHVDRNTGLFNRVYQPAPEI-ESRWGIIELEKPLSTTEIVPVIIXXXXXXXXXXXANSAIYDTFCRRLVSICKAVVVSVNYRRSPEHRYPSAYDDGWAALKWVKSRTWLQSGKDSKVYVYMAGDSSGGNIXXXXXXXXXXXXXXXLGNILLHPLFGGEKRTESEKKLDGKYFVRLQDRDWYWRAFLPEGEDRDHPACNPFGPRGRSLAGIEFPKSLVCVAGLDLVQDWQLEYVEGLKNSGHEVKLLNLKEATIGFYFLPNNDHFYILMEEMKNFVNS 1605 R+VPLNTWVLISNFKLAY +LRR DG+FNRDLAEFLDRKVPAN+ P+DGVFSFDHVD T L R+YQPA + ++R G +EL KPLSTTEIVPV+IFFHGGSF+HSSANSAIYDTFCRRLV+IC VVVSV+YRRSPEHRYP AYDDGW AL WVKSR WLQSGKDS VYVY+AGDSSGGNIAH+VAVRA E V+VLGNILLHP+FGG++RT+SEK LDGKYFV +QDRDWYWRA+LPEGEDRDHPACNPFGPRG+SL G+ FPKSLV VAGLDLVQDWQL YV+GLK +G EV LL LK+ATIGFYFLPNNDHF+ LMEE+ FV+S Sbjct: 14 RIVPLNTWVLISNFKLAYKVLRRPDGSFNRDLAEFLDRKVPANSFPLDGVFSFDHVDSTTNLLTRIYQPASLLHQTRHGTLELTKPLSTTEIVPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSRVWLQSGKDSNVYVYLAGDSSGGNIAHNVAVRATNEGVKVLGNILLHPMFGGQERTQSEKTLDGKYFVTIQDRDWYWRAYLPEGEDRDHPACNPFGPRGQSLKGVNFPKSLVVVAGLDLVQDWQLAYVDGLKKTGLEVNLLYLKQATIGFYFLPNNDHFHCLMEELNKFVHS 343
BLAST of rna-TanjilR_24632 vs. DB:Swiss
Match: GID1C_ARATH (Gibberellin receptor GID1C OS=Arabidopsis thaliana OX=3702 GN=GID1C PE=1 SV=1) HSP 1 Score: 453.366 bits (1165), Expect = 1.426e-156 Identity = 239/329 (72.64%), Postives = 282/329 (85.71%), Query Frame = 1 Query: 622 VVPLNTWVLISNFKLAYNLLRRADGTFNRDLAEFLDRKVPANTIPVDGVFSFDHV-DRNTGLFNRVYQPAPEIESRWGIIELEKPLSTTEIVPVIIXXXXXXXXXXXANSAIYDTFCRRLVSICKAVVVSVNYRRSPEHRYPSAYDDGWAALKWVKSRTWLQSGKDSKVYVYMAGDSSGGNIXXXXXXXXXXXXXXXLGNILLHPLFGGEKRTESEKKLDGKYFVRLQDRDWYWRAFLPEGEDRDHPACNPFGPRGRSLAGIEFPKSLVCVAGLDLVQDWQLEYVEGLKNSGHEVKLLNLKEATIGFYFLPNNDHFYILMEEMKNFVNS 1605 VVPLNTWVLISNFKLAYNLLRR DGTFNR LAEFLDRKVPAN PV+GVFSFD + DR T L +RVY+PA + + I +L+ P+ EIVPVI+FFHGGSF+HSSANSAIYDT CRRLV +C AVVVSVNYRR+PE+RYP AYDDGWA LKWV S +WL+S KDSKV +++AGDSSGGNI H+VAVRA E ++VLGNILL+P+FGG +RTESEK+LDGKYFV ++DRDWYWRAFLPEGEDR+HPAC+PFGPR +SL G+ FPKSLV VAGLDL+QDWQL+Y EGLK +G EVKLL L++ATIGFY LPNN+HF+ +M+E+ FVN+ Sbjct: 15 VVPLNTWVLISNFKLAYNLLRRPDGTFNRHLAEFLDRKVPANANPVNGVFSFDVIIDRQTNLLSRVYRPA-DAGTSPSITDLQNPVDG-EIVPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNSSSWLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVESRIDVLGNILLNPMFGGTERTESEKRLDGKYFVTVRDRDWYWRAFLPEGEDREHPACSPFGPRSKSLEGLSFPKSLVVVAGLDLIQDWQLKYAEGLKKAGQEVKLLYLEQATIGFYLLPNNNHFHTVMDEIAAFVNA 341
BLAST of rna-TanjilR_24632 vs. DB:Swiss
Match: GID1A_ARATH (Gibberellin receptor GID1A OS=Arabidopsis thaliana OX=3702 GN=GID1A PE=1 SV=1) HSP 1 Score: 442.965 bits (1138), Expect = 1.677e-152 Identity = 233/330 (70.61%), Postives = 282/330 (85.45%), Query Frame = 1 Query: 622 VVPLNTWVLISNFKLAYNLLRRADGTFNRDLAEFLDRKVPANTIPVDGVFSFD-HVDRNTGLFNRVYQPA-PEIESRWGIIELEKPLSTTEIVPVIIXXXXXXXXXXXANSAIYDTFCRRLVSICKAVVVSVNYRRSPEHRYPSAYDDGWAALKWVKSRTWLQSGKDSKVYVYMAGDSSGGNIXXXXXXXXXXXXXXXLGNILLHPLFGGEKRTESEKKLDGKYFVRLQDRDWYWRAFLPEGEDRDHPACNPFGPRGRSLAGIEFPKSLVCVAGLDLVQDWQLEYVEGLKNSGHEVKLLNLKEATIGFYFLPNNDHFYILMEEMKNFVNS 1605 VVPLNTWVLISNFK+AYN+LRR DGTFNR LAE+LDRKV AN PVDGVFSFD +DR L +RVY+PA + E I++LEKP+ +IVPVI+FFHGGSF+HSSANSAIYDT CRRLV +CK VVVSVNYRR+PE+ YP AYDDGW AL WV SR+WL+S KDSKV++++AGDSSGGNIAH+VA+RA E ++VLGNILL+P+FGG +RTESEK LDGKYFV ++DRDWYW+AFLPEGEDR+HPACNPF PRG+SL G+ FPKSLV VAGLDL++DWQL Y EGLK +G EVKL++L++AT+GFY LPNN+HF+ +M+E+ FVN+ Sbjct: 15 VVPLNTWVLISNFKVAYNILRRPDGTFNRHLAEYLDRKVTANANPVDGVFSFDVLIDRRINLLSRVYRPAYADQEQPPSILDLEKPVDG-DIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNSRSWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGESGIDVLGNILLNPMFGGNERTESEKSLDGKYFVTVRDRDWYWKAFLPEGEDREHPACNPFSPRGKSLEGVSFPKSLVVVAGLDLIRDWQLAYAEGLKKAGQEVKLMHLEKATVGFYLLPNNNHFHNVMDEISAFVNA 343
BLAST of rna-TanjilR_24632 vs. DB:Swiss
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica OX=39947 GN=GID1 PE=1 SV=1) HSP 1 Score: 392.889 bits (1008), Expect = 1.402e-132 Identity = 208/337 (61.72%), Postives = 263/337 (78.04%), Query Frame = 1 Query: 622 VVPLNTWVLISNFKLAYNLLRRADGTFNRDLAEFLDRKVPANTIPVDGVFSFDHV-DRNTGLFNRVYQPAPEIESRWGIIELEKPL-------STTEIVPVIIXXXXXXXXXXXANSAIYDTFCRRLVSICKAVVVSVNYRRSPEHRYPSAYDDGWAALKWVKSRTWLQSGKDSKVYVYMAGDSSGGNIXXXXXXXXXXXXXXXLGNILLHPLFGGEKRTESEKKLDGKYFVRLQDRDWYWRAFLPEGEDRDHPACNPFGPRGRSLAGIEFPKSLVCVAGLDLVQDWQLEYVEGLKNSGHEVKLLNLKEATIGFYFLPNNDHFYILMEEMKNFVNSN 1608 VVPL+TWVLISNFKL+YN+LRRADGTF RDL E+LDR+VPAN P++GV SFDH+ D++ GL R+Y+ A E ++ G + +P+ E PVIIFFHGGSF HSSA+S IYD+ CRR V + K VVVSVNYRR+PEHRYP AYDDGW ALKWV S+ +++SG D++ V+++GDSSGGNIAHHVAVRAA+E V+V GNILL+ +FGG +RTESE++LDGKYFV LQDRDWYW+A+LPE DRDHPACNPFGP GR L G+ F KSL+ V+GLDL D QL Y + L+ GH VK++ + AT+GFY LPN H++ +MEE+ +F+N+N Sbjct: 15 VVPLHTWVLISNFKLSYNILRRADGTFERDLGEYLDRRVPANARPLEGVSSFDHIIDQSVGLEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMSQPFMRSGGDAQARVFLSGDSSGGNIAHHVAVRAADEGVKVCGNILLNAMFGGTERTESERRLDGKYFVTLQDRDWYWKAYLPEDADRDHPACNPFGPNGRRLGGLPFAKSLIIVSGLDLTCDRQLAYADALREDGHHVKVVQCENATVGFYLLPNTVHYHEVMEEISDFLNAN 351
BLAST of rna-TanjilR_24632 vs. DB:Swiss
Match: CXE18_ARATH (Probable carboxylesterase 18 OS=Arabidopsis thaliana OX=3702 GN=CXE18 PE=1 SV=1) HSP 1 Score: 175.252 bits (443), Expect = 8.851e-49 Identity = 123/336 (36.61%), Postives = 183/336 (54.46%), Query Frame = 1 Query: 622 VVPLNTWVLISNFKLAYNLLRRADGTFNRDLAEFLDRKVPANTIPVDGVFSFDHV-DRNTGLFNRVYQPAPEIESRWGIIELEKPLSTTEIVPVIIXXXXXXXXXXXANSAIYDTFCRRLVSICKAVVVSVNYRRSPEHRYPSAYDDGWAALKWVKSR--TWLQSGKDSKVYVYMAGDSSGGNIXXXXXX------XXXXXXXXXLGNILLHPLFGGEKRTESEKKLDGKYFVRLQDRDWYWRAFLPEGEDRDHPACNPFGPRGRSLAGIEFPKSLVCVAGLDLVQDWQLEYVEGLKNSGHEVKLLNLKEATIGFYFLPNNDHFYILMEEMKNFVN 1602 +PL T + ++ + +R DGT NR D + P N PV+ V + D V D++ L+ R+Y P + + +PV++FFHGG F+ S N+ YD CRR A V+SVNYR +PEHRYP+ YDDG+ ALK+++ + L + D + AGDS+GGNIAH+VA+ R++ V+++G I + P FGGE+RTE+EK+L G V DW W+A G +RDH A N GP ++G+++P+++V VAG D ++DWQ Y E LK G + L+ FY P L+ +K+FV+ Sbjct: 12 TLPLKTRIALTVISTMTDNAQRPDGTINRRFLRLFDFRAPPNPKPVNIVSTSDFVVDQSRDLWFRLYTPH----------------VSGDKIPVVVFFHGGGFAFLSPNAYPYDNVCRRFARKLPAYVISVNYRLAPEHRYPAQYDDGFDALKYIEENHGSILPANADLS-RCFFAGDSAGGNIAHNVAIRICREPRSSFTAVKLIGLISIQPFFGGEERTEAEKQLVGAPLVSPDRTDWCWKAM---GLNRDHEAVNVGGPNAVDISGLDYPETMVVVAGFDPLKDWQRSYYEWLKLCGKKATLIEYPNMFHAFYIFPELPEAGQLIMRIKDFVD 327
BLAST of rna-TanjilR_24632 vs. DB:Swiss
Match: CXE17_ARATH (Probable carboxylesterase 17 OS=Arabidopsis thaliana OX=3702 GN=CXE17 PE=2 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 9.678e-31 Identity = 84/238 (35.29%), Postives = 123/238 (51.68%), Query Frame = 1 Query: 949 AIYDTFCRRLVSICKAVVVSVNYRRSPEHRYPSAYDDGWAALKWVKSR---------TWLQSGKDSKVYVYMAGDSSGGNIXXXXXXXXXXX-----XXXXLGNILLHPLFGGEKRTESEKKLD--GKYFVRLQDRDWYWRAFLPEGEDRDHPACNPFGPRGRSLAGIEFPKSLVCVAGLDLVQDWQLEYVEGLKNSGHEVKLLNLKEATIGFYFLPNN----DHFYILMEEMKNFVN 1602 + Y F L + V+VSVNYR +PEHR P+AYDDG + W+ + +WL S V++AGDS+G NIA+ VAVR + + G IL+HP FGGE RT SEK+ + L D YWR LP G RDHP CNP S AG + P ++V +A D++++ LE + +++ G V+ + F+ L N+ D + +M + NF++ Sbjct: 111 SCYHDFLTSLAVKARCVIVSVNYRLAPEHRLPAAYDDGVNVVSWLVKQQISTGGGYPSWLSKCNLSN--VFLAGDSAGANIAYQVAVRIMASGKYANTLHLKGIILIHPFFGGESRTSSEKQQHHTKSSALTLSASDAYWRLALPRGASRDHPWCNPL----MSSAGAKLPTTMVFMAEFDILKERNLEMCKVMRSHGKRVEGIVHGGVGHAFHILDNSSVSRDRIHDMMCRLHNFIH 342
BLAST of rna-TanjilR_24632 vs. DB:Swiss
Match: CXE15_ARATH (Probable carboxylesterase 15 OS=Arabidopsis thaliana OX=3702 GN=CXE15 PE=2 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 2.941e-29 Identity = 94/245 (38.37%), Postives = 128/245 (52.24%), Query Frame = 1 Query: 856 IELEKPLSTTE--IVPVIIXXXXXXXXXXXANSAIYDTFCRRLVSICKAVVVSVNYRRSPEHRYPSAYDDGWAALKWVKSRT-------WLQSGKDSKV-YVYMAGDSSGGNIXXXXXXXXXXXXXXXL-----GNILLHPLFGGEKRTESEKKLDGKYFVRLQDRDWYWRAFLPEGEDRDHPACNPFGPRGRSLAGIEFPKSLVCVAGLDLVQDWQLEYVEGLKN-SGHEVKLLNLKEATIGFY 1542 + L KP+S + +PV++FFHGG F S + + FC L S A+VVS +YR +PEHR P+A++D A L W+ + W + G D V++ GDSSGGNIAH +AVR +E+ G +L+ P FGGE+RT SE + + L D +WR LP G RDH NPFGP +L I LV V G +L++D EY LK G V + + GFY Sbjct: 62 LRLYKPISASNRTALPVVVFFHGGGFCFGSRSWPHFHNFCLTLASSLNALVVSPDYRLAPEHRLPAAFEDAEAVLTWLWDQAVSDGVNHWFEDGTDVDFDRVFVVGDSSGGNIAHQLAVRFGSGSIELTPVRVRGYVLMGPFFGGEERTNSENG-PSEALLSLDLLDKFWRLSLPNGATRDHHMANPFGPTSPTLESISLEPMLVIVGGSELLRDRAKEYAYKLKKMGGKRVDYIEFENKEHGFY 305
BLAST of rna-TanjilR_24632 vs. DB:Swiss
Match: CXE6_ARATH (Probable carboxylesterase 6 OS=Arabidopsis thaliana OX=3702 GN=CXE6 PE=2 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 5.228e-27 Identity = 86/241 (35.68%), Postives = 133/241 (55.19%), Query Frame = 1 Query: 784 VDRNTGLFNRVYQPAPEIESRWGIIELEKPLSTTEIVPVIIXXXXXXXXXXXANSAIYDTFCRRLVSICKAVVVSVNYRRSPEHRYPSAYDDGWAALKWV-KSRT---WLQSGKDSKVYVYMAGDSSGGNIXXXXXXXXXXXXXXXL---GNILLHPLFGGEKRTESEKKL--DGKYFVRLQDRDWYWRAFLPEGEDRDHPACNPFGPRGRSLAGIEFPKSLVCVAGLDLVQDWQLEYVEG 1479 +D+ T ++ R+Y P +S + +P+I++FHGG F SA+ Y F RL + + +V+SVNYR +PE+ P+AY+DG A+ W+ K+R W + + +++AGDS+GGNIA VA R A + L G IL+ P + GE+RTESE+++ D + L D +WR LP G +R+HP C P +S ++LVCVA +DL+ D +E +G Sbjct: 65 IDKLTNVWARLYVPMTTTKS------------SVSKLPLIVYFHGGGFCVGSASWLCYHEFLARLSARSRCLVMSVNYRLAPENPLPAAYEDGVNAILWLNKARNDNLWAKQCDFGR--IFLAGDSAGGNIAQQVAARLASPEDLALKIEGTILIQPFYSGEERTESERRVGNDKTAVLTLASSDAWWRMSLPRGANREHPYCKPVKMIIKSST---VTRTLVCVAEMDLLMDSNMEMCDG 288
BLAST of rna-TanjilR_24632 vs. DB:Swiss
Match: CXE20_ARATH (Probable carboxylesterase 120 OS=Arabidopsis thaliana OX=3702 GN=CXE20 PE=2 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 9.200e-24 Identity = 80/241 (33.20%), Postives = 124/241 (51.45%), Query Frame = 1 Query: 673 NLLRRADGTFNRDLAEFLDRKVPANTIPVDGVFSFD-HVDRNTGLFNRVYQPAPEIESRWGIIELEKPLSTTEIVPVIIXXXXXXXXXXXANSAIYDTFCRRLVSICKAVVVSVNYRRSPEHRYPSAYDDGWAALKWVKSR--TWLQSGKDSKVYVYMAGDSSGGNIX-----XXXXXXXXXXXXXXLGNILLHPLFGGEKRTESEKKLDGKYFVRLQDRDWYWRAFLPEGEDRDHPACNP 1371 N++ DG+ RDL+ F + P++ S D V++ + R+Y P+ + G + +K +P+++++HGG F S + ++ FC + A+VVS +YR +PEHR P+AYDDG AL W+K+ W++S D V++ G S+GGN+A V + +++ G IL HP FGGE+R+ESE +L D W LP G DRDH NP Sbjct: 15 NIVNNPDGSITRDLSNFPCTAATPDPSPLNPAVSKDLPVNQLKSTWLRLYLPSSAVNE--GNVSSQK-------LPIVVYYHGGGFILCSVDMQLFHDFCSEVARDLNAIVVSPSYRLAPEHRLPAAYDDGVEALDWIKTSDDEWIKSHADFS-NVFLMGTSAGGNLAYNVGLRSVDSVSDLSPLQIRGLILHHPFFGGEERSESEIRLMNDQVCPPIVTDVMWDLSLPVGVDRDHEYSNP 245
BLAST of rna-TanjilR_24632 vs. DB:Swiss
Match: CXE9_ARATH (Probable carboxylesterase 9 OS=Arabidopsis thaliana OX=3702 GN=CXE9 PE=2 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 5.860e-23 Identity = 84/252 (33.33%), Postives = 119/252 (47.22%), Query Frame = 1 Query: 784 VDRNTGLFNRVYQPAPEIESRWGIIELEKPLSTTEIVPVIIXXXXXXXXXXXANSAIYDTFCRRLVSICKAVVVSVNYRRSPEHRYPSAYDDGWAALKWVKSRT--------WLQSGKDSKVYVYMAGDSSGGNIXXXXXXXXXXXXXXXL---GNILLHPLFGGEKRTESEKKLDGKYFVRLQDRDWYWRAFLPEGEDRDHPACNPFGPRGRSLAGIEFPKSLVCVAGLDLVQDWQLEYVEGLKNSGHEVK 1506 ++ TG+ R+++P L + +P+II HG + ANSA D C ++ S +VVSV+YR PEHR P+ YDD AL WVK + WL+ D Y+ G S+G NIA +A+R+ + D+ L G + PLFGG+ RT+SE K + + D W LP G DRDH CNP G + + LV G D D Q ++V L +G V+ Sbjct: 53 INHETGVSVRIFRPT----------NLPSNDNAVARLPIIIHLHGSGWILYPANSAANDRCCSQMASELTVIVVSVHYRLPPEHRLPAQYDDALDALLWVKQQVVDSTNGEPWLKDYADFS-RCYICGSSNGANIAFQLALRSLDHDLTPLQIDGCVFYQPLFGGKTRTKSELKNFADPVMPVPAVDAMWELSLPVGVDRDHRYCNPLGYLPQKEKVGRLGRCLVIGYGGDTSLDRQQDFVNLLVAAGVRVE 293 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_24632 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_24632_La_Tanjil_v1.0 ID=rna-TanjilR_24632_La_Tanjil_v1.0; Name=rna-TanjilR_24632; organism=Lupinus angustifolius; type=mRNA; length=1614bpback to top protein sequence of rna-TanjilR_24632_La_Tanjil_v1.0 >rna-TanjilR_24632_La_Tanjil_v1.0 ID=rna-TanjilR_24632_La_Tanjil_v1.0; Name=rna-TanjilR_24632_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=344bpback to top mRNA from alignment at Chr_LG04-CM007364.1:25605361..25606974+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_24632_La_Tanjil_v1.0 ID=rna-TanjilR_24632_La_Tanjil_v1.0; Name=rna-TanjilR_24632; organism=Lupinus angustifolius; type=mRNA; length=1614bp; location=Sequence derived from: Chr_LG04-CM007364.1:25605361..25606974+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG04-CM007364.1:25605361..25606974+ >rna-TanjilR_24632_La_Tanjil_v1.0 ID=rna-TanjilR_24632_La_Tanjil_v1.0; Name=rna-TanjilR_24632; organism=Lupinus angustifolius; type=CDS; length=1035bp; location=Sequence derived from: Chr_LG04-CM007364.1:25605361..25606974+ (Lupinus angustifoliusback to top |