rna-TanjilR_24561
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_24561 vs. DB:Swiss
Match: FLK_ARATH (Flowering locus K homology domain OS=Arabidopsis thaliana OX=3702 GN=FLK PE=1 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 6.587e-27 Identity = 52/67 (77.61%), Postives = 59/67 (88.06%), Query Frame = 3
Query: 3780 VTQHMQIPLSFADAVIGASGSNISYIRRASGASITIQETRGVPGEMTVEISGTASQIQAAQQLVQVY 3980
VTQ MQIPLS+ADAVIG SGSNISY RR SGA++TIQETRGVPGEMTVE+SGT SQ+Q A QL+Q +
Sbjct: 458 VTQQMQIPLSYADAVIGTSGSNISYTRRLSGATVTIQETRGVPGEMTVEVSGTGSQVQTAVQLIQNF 524 HSP 2 Score: 36.965 bits (84), Expect = 6.587e-27 Identity = 17/30 (56.67%), Postives = 21/30 (70.00%), Query Frame = 1
Query: 3589 PPMDKHLHQGPPPAYARDPSMGIHSSTAPP 3678
PPM+K HQG AY R+P M +H S+APP
Sbjct: 424 PPMEKQPHQGIS-AYGREPPMNVHVSSAPP 452 HSP 3 Score: 114.775 bits (286), Expect = 1.090e-24 Identity = 56/80 (70.00%), Postives = 63/80 (78.75%), Query Frame = 1
Query: 292 VTENFTSQEVQGPEGDSK-PSEIKKWPGWPGENVFRMLVPVQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTTERAV 528
+ E+ S + PE D+ E K+WPGWPGE VFRMLVP QKVGSIIGRKG+ IKKI EET+ARIKILDGPPGTTERAV
Sbjct: 155 IPEHLESLQKSEPEEDATVGGEEKRWPGWPGETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGTTERAV 234 HSP 4 Score: 89.3521 bits (220), Expect = 1.118e-16 Identity = 49/86 (56.98%), Postives = 65/86 (75.58%), Query Frame = 3
Query: 2439 VMVSAKEEPDRAIPPAVEGLLRVHKQVVN-VDQDPADSASGAGRP--VVTRLLVADTQAGSLIGKQGSTIKSFQDASGCNIRVLGS 2687
VMVS KEEP+ ++PP+++GLLRVH ++V+ +D + AS A P V TRLLV +QAGSLIGKQG T+K+ Q+AS C +RVLGS
Sbjct: 234 VMVSGKEEPESSLPPSMDGLLRVHMRIVDGLDGE----ASQAPPPSKVSTRLLVPASQAGSLIGKQGGTVKAIQEASACIVRVLGS 315 HSP 5 Score: 69.707 bits (169), Expect = 1.566e-10 Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 1
Query: 2851 EHLPVFALRDDSVVEIQGESAGVHKGVELIALHLRKFLVDRSIVGVFEAKV 3003
E LPVFAL+DD VVE+ GE VH+ +ELIA HLRKFLVDRSI+ FE ++
Sbjct: 316 EDLPVFALQDDRVVEVVGEPTSVHRALELIASHLRKFLVDRSIIPFFENQM 366
BLAST of rna-TanjilR_24561 vs. DB:Swiss
Match: PEP_ARATH (RNA-binding KH domain-containing protein PEPPER OS=Arabidopsis thaliana OX=3702 GN=PEP PE=1 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 1.395e-19 Identity = 55/123 (44.72%), Postives = 75/123 (60.98%), Query Frame = 1
Query: 175 ADPLENEFDDHGVEELPGNTDSLPQEHTVTEEEHQDGGDVTE-----NFTSQEVQGPEGDSKPSEIKKWPGWPGENVFRMLVPVQKVGSIIGRKGEFIKKITEETKARIKILDGPPGTTERAV 528
AD +EN +G LP N + +P + ++ G E + + E P D+ S ++WPGWPG+ VFRM+VPV KVG+IIGRKG+FIKK+ EET+ARIK+LDGP T +R V
Sbjct: 5 ADSVEN----NGSINLPENENLIPAGFSAAALLDENSGAFPELNQPDSLAAAETTFP--DTNDSAEERWPGWPGDCVFRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTPDRIV 121 HSP 2 Score: 79.337 bits (194), Expect = 1.113e-13 Identity = 38/67 (56.72%), Postives = 53/67 (79.10%), Query Frame = 3
Query: 3780 VTQHMQIPLSFADAVIGASGSNISYIRRASGASITIQETRGVPGEMTVEISGTASQIQAAQQLVQVY 3980
V+Q MQIP S+A+ +IG G+NI+YIRR SGA+ITI+E+ P ++TVEI GT SQ+Q A+QL+Q +
Sbjct: 341 VSQTMQIPFSYAEDIIGVEGANIAYIRRRSGATITIKESPH-PDQITVEIKGTTSQVQTAEQLIQEF 406 HSP 3 Score: 66.6254 bits (161), Expect = 1.017e-9 Identity = 37/82 (45.12%), Postives = 54/82 (65.85%), Query Frame = 3
Query: 2439 VMVSAKEEPDRAIPPAVEGLLRVHKQVVNVDQDPADSASGAGRPVVT-RLLVADTQAGSLIGKQGSTIKSFQDASGCNIRVL 2681
V++S KEEP+ + PA++ +LRV ++V + + D AG + RLLVA TQA +LIGKQGS IKS + SG ++R+L
Sbjct: 121 VLISGKEEPEAYMSPAMDAVLRVFRRVSGLPDNDDDDVQNAGSVFSSVRLLVASTQAINLIGKQGSLIKSIVENSGASVRIL 202 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_24561 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 2
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_24561_La_Tanjil_v1.0 ID=rna-TanjilR_24561_La_Tanjil_v1.0; Name=rna-TanjilR_24561; organism=Lupinus angustifolius; type=mRNA; length=4686bpback to top protein sequence of rna-TanjilR_24561_La_Tanjil_v1.0 >rna-TanjilR_24561_La_Tanjil_v1.0 ID=rna-TanjilR_24561_La_Tanjil_v1.0; Name=rna-TanjilR_24561_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=537bpback to top mRNA from alignment at Chr_LG04-CM007364.1:26144070..26148755+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_24561_La_Tanjil_v1.0 ID=rna-TanjilR_24561_La_Tanjil_v1.0; Name=rna-TanjilR_24561; organism=Lupinus angustifolius; type=mRNA; length=4686bp; location=Sequence derived from: Chr_LG04-CM007364.1:26144070..26148755+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG04-CM007364.1:26144070..26148755+ >rna-TanjilR_24561_La_Tanjil_v1.0 ID=rna-TanjilR_24561_La_Tanjil_v1.0; Name=rna-TanjilR_24561; organism=Lupinus angustifolius; type=CDS; length=1614bp; location=Sequence derived from: Chr_LG04-CM007364.1:26144070..26148755+ (Lupinus angustifoliusback to top |