rna-TanjilR_04282
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_04282 vs. DB:Swiss
Match: H2A1_MEDTR (Probable histone H2A.1 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g1v1 PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 2.222e-39 Identity = 69/84 (82.14%), Postives = 76/84 (90.48%), Query Frame = 1
Query: 418 CQVLELAGNAARDNKKNRIIPRHLLLAVRNDEELGKLLAGVTIAHGGVIPNINPVLLPKKSATSSAAAVGSKSPSKATKSPRKA 669
+VLELAGNAARDNKKNRIIPRH+LLAVRNDEELGKLLAGVTIAHGGV+PNINP+LLPKK + AA +KSPSKATKSP+KA
Sbjct: 68 AEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPILLPKK---NEKAATTTKSPSKATKSPKKA 148 HSP 2 Score: 61.2326 bits (147), Expect = 1.076e-10 Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 1
Query: 67 GLQFPVGRIGRYLKKGRYSQRVGTGAP 147
GLQFPVGRIGRYLKKGRY+QRVGTGAP
Sbjct: 30 GLQFPVGRIGRYLKKGRYAQRVGTGAP 56
BLAST of rna-TanjilR_04282 vs. DB:Swiss
Match: H2A4_ARATH (Probable histone H2A.4 OS=Arabidopsis thaliana OX=3702 GN=At5g02560 PE=1 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 3.394e-38 Identity = 65/84 (77.38%), Postives = 74/84 (88.10%), Query Frame = 1
Query: 418 CQVLELAGNAARDNKKNRIIPRHLLLAVRNDEELGKLLAGVTIAHGGVIPNINPVLLPKKSATSSAAAVGSKSPSKATKSPRKA 669
+VLELAGNAARDNKKNRIIPRH+LLAVRNDEELG LL GVTIAHGGV+PNINP+LLPKKS +++ KSPSKATKSP+K+
Sbjct: 70 AEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEKAASTTKTPKSPSKATKSPKKS 153 HSP 2 Score: 60.4622 bits (145), Expect = 2.059e-10 Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 1
Query: 67 GLQFPVGRIGRYLKKGRYSQRVGTGAP 147
GLQFPVGRIGRYLKKGRYS+RVGTGAP
Sbjct: 32 GLQFPVGRIGRYLKKGRYSKRVGTGAP 58
BLAST of rna-TanjilR_04282 vs. DB:Swiss
Match: H2A_PETCR (Histone H2A OS=Petroselinum crispum OX=4043 PE=2 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 1.069e-37 Identity = 69/84 (82.14%), Postives = 73/84 (86.90%), Query Frame = 1
Query: 418 CQVLELAGNAARDNKKNRIIPRHLLLAVRNDEELGKLLAGVTIAHGGVIPNINPVLLPKKSATSSAAAVGSKSPSKATKSPRKA 669
+VLELAGNAARDNKK RIIPRHLLLAVRNDEELGKLLAGVT AHGGV+PNINPVLLPKK T+ AA KSPSKA KSP+KA
Sbjct: 68 AEVLELAGNAARDNKKTRIIPRHLLLAVRNDEELGKLLAGVTFAHGGVLPNINPVLLPKK--TAEKAAKEPKSPSKAGKSPKKA 149 HSP 2 Score: 60.8474 bits (146), Expect = 1.417e-10 Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 1
Query: 67 GLQFPVGRIGRYLKKGRYSQRVGTGAP 147
GLQFPVGRIGRYLKKGRY+QRVGTGAP
Sbjct: 30 GLQFPVGRIGRYLKKGRYAQRVGTGAP 56
BLAST of rna-TanjilR_04282 vs. DB:Swiss
Match: H2A4_ORYSJ (Probable histone H2A.4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0461400 PE=2 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 3.479e-37 Identity = 69/92 (75.00%), Postives = 78/92 (84.78%), Query Frame = 1
Query: 418 CQVLELAGNAARDNKKNRIIPRHLLLAVRNDEELGKLLAGVTIAHGGVIPNINPVLLPKKSATSSAAAVGS----KSPSKA-TKSPRKAVAA 678
+VLELAGNAARDNKKNRIIPRH+LLA+RNDEELGKLLAGVTIAHGGV+PNINPVLLPKK+ +++A KSP KA TKSP+KA AA
Sbjct: 72 AEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTGSAAAKEAKEGKTPKSPKKATTKSPKKAAAA 163 HSP 2 Score: 60.8474 bits (146), Expect = 1.927e-10 Identity = 25/27 (92.59%), Postives = 27/27 (100.00%), Query Frame = 1
Query: 67 GLQFPVGRIGRYLKKGRYSQRVGTGAP 147
GLQFPVGRIGRYLK+GRYSQR+GTGAP
Sbjct: 34 GLQFPVGRIGRYLKQGRYSQRIGTGAP 60
BLAST of rna-TanjilR_04282 vs. DB:Swiss
Match: H2A4_ORYSI (Probable histone H2A.4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_019561 PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 3.479e-37 Identity = 69/92 (75.00%), Postives = 78/92 (84.78%), Query Frame = 1
Query: 418 CQVLELAGNAARDNKKNRIIPRHLLLAVRNDEELGKLLAGVTIAHGGVIPNINPVLLPKKSATSSAAAVGS----KSPSKA-TKSPRKAVAA 678
+VLELAGNAARDNKKNRIIPRH+LLA+RNDEELGKLLAGVTIAHGGV+PNINPVLLPKK+ +++A KSP KA TKSP+KA AA
Sbjct: 72 AEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTGSAAAKEAKEGKTPKSPKKATTKSPKKAAAA 163 HSP 2 Score: 60.8474 bits (146), Expect = 1.927e-10 Identity = 25/27 (92.59%), Postives = 27/27 (100.00%), Query Frame = 1
Query: 67 GLQFPVGRIGRYLKKGRYSQRVGTGAP 147
GLQFPVGRIGRYLK+GRYSQR+GTGAP
Sbjct: 34 GLQFPVGRIGRYLKQGRYSQRIGTGAP 60
BLAST of rna-TanjilR_04282 vs. DB:Swiss
Match: H2A2_MEDTR (Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 1.702e-36 Identity = 67/85 (78.82%), Postives = 74/85 (87.06%), Query Frame = 1
Query: 418 CQVLELAGNAARDNKKNRIIPRHLLLAVRNDEELGKLLAGVTIAHGGVIPNINPVLLPKKSATSSAAAVGSKSPS-KATKSPRKA 669
+VLELAGNAARDNKKNRIIPRH+LLAVRNDEELGKLLAGVTIAHGGV+PNINPVLLPKK+ S+ + KSP KA KSP+KA
Sbjct: 69 AEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTERSNTVSKEPKSPKPKAGKSPKKA 153 HSP 2 Score: 60.8474 bits (146), Expect = 1.732e-10 Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 1
Query: 67 GLQFPVGRIGRYLKKGRYSQRVGTGAP 147
GLQFPVGRIGRYLKKGRY+QRVGTGAP
Sbjct: 31 GLQFPVGRIGRYLKKGRYAQRVGTGAP 57
BLAST of rna-TanjilR_04282 vs. DB:Swiss
Match: H2A3_MEDTR (Probable histone H2A.3 OS=Medicago truncatula OX=3880 PE=3 SV=1) HSP 1 Score: 127.487 bits (319), Expect = 5.426e-36 Identity = 67/86 (77.91%), Postives = 73/86 (84.88%), Query Frame = 1
Query: 418 CQVLELAGNAARDNKKNRIIPRHLLLAVRNDEELGKLLAGVTIAHGGVIPNINPVLLPKKSATSSAAAVGSKSP--SKATKSPRKA 669
+VLELAGNAARDNKKNRIIPRHLLLAVRNDEELGKLLAGVTIAHGGV+PNINP+LLPKK + A G K P +KA KSP+KA
Sbjct: 70 AEVLELAGNAARDNKKNRIIPRHLLLAVRNDEELGKLLAGVTIAHGGVLPNINPILLPKK---TERANTGGKEPKTTKAGKSPKKA 152 HSP 2 Score: 60.8474 bits (146), Expect = 1.681e-10 Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = 1
Query: 67 GLQFPVGRIGRYLKKGRYSQRVGTGAP 147
GLQFPVGRIGRYLKKGRY+QRVGTGAP
Sbjct: 32 GLQFPVGRIGRYLKKGRYAQRVGTGAP 58
BLAST of rna-TanjilR_04282 vs. DB:Swiss
Match: H2A7_ARATH (Probable histone H2A.7 OS=Arabidopsis thaliana OX=3702 GN=At5g59870 PE=1 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.310e-35 Identity = 65/84 (77.38%), Postives = 72/84 (85.71%), Query Frame = 1
Query: 418 CQVLELAGNAARDNKKNRIIPRHLLLAVRNDEELGKLLAGVTIAHGGVIPNINPVLLPKKSATSSAAAVGSKSPSKATKSPRKA 669
+VLELAGNAARDNKK+RIIPRHLLLA+RNDEELGKLL+GVTIAHGGV+PNIN VLLPKKSAT A +KSP KSP+KA
Sbjct: 70 AEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPNINSVLLPKKSATKPAEEKATKSP---VKSPKKA 150 HSP 2 Score: 52.7582 bits (125), Expect = 1.437e-7 Identity = 22/27 (81.48%), Postives = 25/27 (92.59%), Query Frame = 1
Query: 67 GLQFPVGRIGRYLKKGRYSQRVGTGAP 147
GLQFPVGRI R+LKKGRY+QR+G GAP
Sbjct: 32 GLQFPVGRITRFLKKGRYAQRLGGGAP 58
BLAST of rna-TanjilR_04282 vs. DB:Swiss
Match: H2A6_WHEAT (Protein H2A.6 OS=Triticum aestivum OX=4565 GN=H2A-3 PE=2 SV=3) HSP 1 Score: 125.946 bits (315), Expect = 2.075e-35 Identity = 68/94 (72.34%), Postives = 78/94 (82.98%), Query Frame = 1
Query: 406 LNWIC-QVLELAGNAARDNKKNRIIPRHLLLAVRNDEELGKLLAGVTIAHGGVIPNINPVLLPKKSATSSAAAVGSKSPSK--ATKSPRKAVAA 678
L ++ +VLELAGNAA+DNKK RIIPRHLLLAVRND+ELG+LLAGVTIAHGGVIPNIN VLLPKK+A +A +KSP K ATKSP+K AA
Sbjct: 53 LEYLAAEVLELAGNAAKDNKKTRIIPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINSVLLPKKAA-GAAEKESTKSPKKKAATKSPKKKTAA 145 HSP 2 Score: 57.3806 bits (137), Expect = 3.336e-9 Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = 1
Query: 67 GLQFPVGRIGRYLKKGRYSQRVGTGAP 147
GLQFPVGRIGRYLKKGRY+Q VG+GAP
Sbjct: 20 GLQFPVGRIGRYLKKGRYAQAVGSGAP 46
BLAST of rna-TanjilR_04282 vs. DB:Swiss
Match: H2A2_PEA (Histone H2A.2 OS=Pisum sativum OX=3888 PE=2 SV=1) HSP 1 Score: 125.561 bits (314), Expect = 2.540e-35 Identity = 64/84 (76.19%), Postives = 75/84 (89.29%), Query Frame = 1
Query: 418 CQVLELAGNAARDNKKNRIIPRHLLLAVRNDEELGKLLAGVTIAHGGVIPNINPVLLPKKSATSSAAAVGSKSPSKATKSPRKA 669
+VLELAGNAARDNKKNRI PRHLLLAVRND ELGKLLAGVTIA+GGV+PNINPVLLPK++ ++++A KSPSKA K+P+KA
Sbjct: 69 AEVLELAGNAARDNKKNRISPRHLLLAVRNDVELGKLLAGVTIAYGGVLPNINPVLLPKRTESAASA---PKSPSKAKKTPKKA 149 HSP 2 Score: 59.6918 bits (143), Expect = 4.387e-10 Identity = 25/27 (92.59%), Postives = 27/27 (100.00%), Query Frame = 1
Query: 67 GLQFPVGRIGRYLKKGRYSQRVGTGAP 147
GLQFPVGRIGR+LKKGRY+QRVGTGAP
Sbjct: 31 GLQFPVGRIGRFLKKGRYAQRVGTGAP 57 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_04282 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_04282_La_Tanjil_v1.0 ID=rna-TanjilR_04282_La_Tanjil_v1.0; Name=rna-TanjilR_04282; organism=Lupinus angustifolius; type=mRNA; length=681bpback to top protein sequence of rna-TanjilR_04282_La_Tanjil_v1.0 >rna-TanjilR_04282_La_Tanjil_v1.0 ID=rna-TanjilR_04282_La_Tanjil_v1.0; Name=rna-TanjilR_04282_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=147bpback to top mRNA from alignment at Chr_LG03-CM007363.1:397093..397773+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_04282_La_Tanjil_v1.0 ID=rna-TanjilR_04282_La_Tanjil_v1.0; Name=rna-TanjilR_04282; organism=Lupinus angustifolius; type=mRNA; length=681bp; location=Sequence derived from: Chr_LG03-CM007363.1:397093..397773+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG03-CM007363.1:397093..397773+ >rna-TanjilR_04282_La_Tanjil_v1.0 ID=rna-TanjilR_04282_La_Tanjil_v1.0; Name=rna-TanjilR_04282; organism=Lupinus angustifolius; type=CDS; length=444bp; location=Sequence derived from: Chr_LG03-CM007363.1:397093..397773+ (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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