rna-TanjilR_04321
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_04321 vs. DB:Swiss
Match: ZAT5_ARATH (Zinc finger protein ZAT5 OS=Arabidopsis thaliana OX=3702 GN=ZAT5 PE=2 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 3.611e-44 Identity = 119/308 (38.64%), Postives = 160/308 (51.95%), Query Frame = 1 Query: 43 NDANHVVKGKRTKRQRPLSP-------XXXXXXXXXXXXXXXXXXXXDHGSTFSSPTTTFDKTRNEEEDMANCLILLAGGK-REGNDARNNKNMXXXXXXXXXXXXXXXXXXXXXXKIGFYDYECKTCNKTFSSFQALGGHMASHKKPKMTLEEK-KLP---PSLSSSGIFKIKEANQTHIKSSPQIPTSLQLGCPNNKTFDGNKSKFHECSICGAEFTSGQALGGHMXXXXXXXXXXXXXXXXXXFDATSTTIEV---------KPRNVLEFDLNLPAPDEDISDSNFQFTTTSKSMVLPAMVGCRY 903 +D ++KGKRTKRQR S + ++ + + ++ S SSP TT D T+ EEEDMA CLI+LA G D +N++ + ++ + FY YECKTCN+TFSSFQALGGH ASHKKP+ + EEK +LP P S+S +E +H K S S N +K HECSICG+EFTSGQALGGHMRRHRT+ + + + ST E+ + R L DLNLPAP++D+ +S FQ S + PA++ C Y Sbjct: 10 SDQTQIIKGKRTKRQRSSSTFVVTAATTVTSTSSSAGGSGGERAVSDEYNSAVSSPVTT-DCTQ-EEEDMAICLIMLARGTVLPSPDLKNSRKIHQKISSENS---------------SFYVYECKTCNRTFSSFQALGGHRASHKKPRTSTEEKTRLPLTQPKSSAS-----EEGQNSHFKVSGSALASQASNIIN------KANKVHECSICGSEFTSGQALGGHMRRHRTAVTTISPVAATAEVSRNSTEEEIEINIGRSMEQQRKYLPLDLNLPAPEDDLRESKFQGIVFSAT---PALIDCHY 286
BLAST of rna-TanjilR_04321 vs. DB:Swiss
Match: ZAT11_ARATH (Zinc finger protein ZAT11 OS=Arabidopsis thaliana OX=3702 GN=ZAT11 PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 9.567e-17 Identity = 45/102 (44.12%), Postives = 55/102 (53.92%), Query Frame = 1 Query: 385 YECKTCNKTFSSFQALGGHMASHKKPKMTLEEKKLPPSLSSSGIFKIKEANQTHIKSSPQIPTSLQLGCPNNKTFDGNKSKFHECSICGAEFTSGQALGGHM 690 +ECKTCNK FSSFQALGGH ASHKKPK+T+E+K + H+ + + GN FH+CSIC F +GQALGGHM Sbjct: 47 FECKTCNKRFSSFQALGGHRASHKKPKLTVEQKDV-----------------KHLSND----------------YKGN--HFHKCSICSQSFGTGQALGGHM 113
BLAST of rna-TanjilR_04321 vs. DB:Swiss
Match: ZAT4_ARATH (Zinc finger protein ZAT4 OS=Arabidopsis thaliana OX=3702 GN=ZAT4 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.109e-12 Identity = 52/148 (35.14%), Postives = 67/148 (45.27%), Query Frame = 1 Query: 385 YECKTCNKTFSSFQALGGHMASHKKPKMTLEEKKLPPSLSSSGIFKIKEANQTHIKSSPQIPTSLQLGCPNNKTFDGNKSKFHECSICGAEFTSGQALGGHMXXXXXXXXXXXXXXXXXXFDATSTTIEVKPRNVLEFDLNLPAPDED 828 ++C+TC K F S+QALGGH ASHKK N+ + + Q+ T LG K HEC IC FTSGQALGGH R H ++ + S + VK R + DLNLPAP+E+ Sbjct: 194 FKCETCGKVFKSYQALGGHRASHKK-------------------------NKACMTKTEQVETEYVLGVKEKKV--------HECPICFRVFTSGQALGGHKRSHGSNIGAGRGLSVSQIV-QIEEEVSVKQRMI---DLNLPAPNEE 304
BLAST of rna-TanjilR_04321 vs. DB:Swiss
Match: AZF1_ARATH (Zinc finger protein AZF1 OS=Arabidopsis thaliana OX=3702 GN=AZF1 PE=2 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 1.843e-11 Identity = 40/102 (39.22%), Postives = 54/102 (52.94%), Query Frame = 1 Query: 382 DYECKTCNKTFSSFQALGGHMASHKKPKMTLEEKKLPPSLSSSGIFKIKEANQTHIKSSPQIPTSLQLGCPNNKTFDGNKSKFHECSICGAEFTSGQALGGH 687 DY+C C K+FSS+QALGGH SH+KP T S++S +E + +S + ++ + N + G K H CSIC F SGQALGGH Sbjct: 96 DYKCTVCGKSFSSYQALGGHKTSHRKPTNT--------SITSGN----QELSNNSHSNSGSVVINVTVNTGNGVSQSG---KIHTCSICFKSFASGQALGGH 182
BLAST of rna-TanjilR_04321 vs. DB:Swiss
Match: ZAT1_ARATH (Zinc finger protein ZAT1 OS=Arabidopsis thaliana OX=3702 GN=ZAT1 PE=2 SV=1) HSP 1 Score: 66.2402 bits (160), Expect = 2.880e-11 Identity = 54/149 (36.24%), Postives = 63/149 (42.28%), Query Frame = 1 Query: 385 YECKTCNKTFSSFQALGGHMASHKKPKMTLEEKKLPPSLSSSGIFKIKEANQTHIKSSPQIPTSLQLGCPN-NKTFDGNKSKFHECSICGAEFTSGQALGGHMXXXXXXXXXXXXXXXXXXFDATSTTIEVKPRNVLEFDLNLPAPDED 828 +EC+TC K F S+QALGGH ASHKK KI E + QLG K + S HEC IC FTSGQALGGH R++ S F S I + DLNLPAP E+ Sbjct: 160 FECETCEKVFKSYQALGGHRASHKK--------------------KIAETD--------------QLGSDELKKKKKKSTSSHHECPICAKVFTSGQALGGH---------KRSHASANNEFTRRSGII------ISLIDLNLPAPSEE 259
BLAST of rna-TanjilR_04321 vs. DB:Swiss
Match: ZFP1_WHEAT (Zinc finger protein 1 OS=Triticum aestivum OX=4565 PE=2 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 1.262e-10 Identity = 45/157 (28.66%), Postives = 72/157 (45.86%), Query Frame = 1 Query: 217 EEEDMANCLILLAGGKREGNDARNNKNMXXXXXXXXXXXXXXXXXXXXXXKIGFYDYECKTCNKTFSSFQALGGHMASHKKPKMTLEEKKLPPSLSSSGIFKIKEANQTHIKSSPQIPTSLQLGCPNNKTFDGNKSKFHECSICGAEFTSGQALGGH 687 EEE++A CL++L+ G ++ A ++ +++C C K+FSS+QALGGH SH+ ++ PPS +++ A + S+ +S + DG ++ H CSIC EF +GQALGGH Sbjct: 55 EEENLALCLLMLSRGGKQRVQAPQPESFAAPVPA---------------------EFKCSVCGKSFSSYQALGGHKTSHRV------KQPSPPSDAAAAPLVALPAVAAILPSAEPATSS------TAASSDGATNRVHRCSICQKEFPTGQALGGH 178
BLAST of rna-TanjilR_04321 vs. DB:Swiss
Match: ZAT8_ARATH (Zinc finger protein ZAT8 OS=Arabidopsis thaliana OX=3702 GN=ZAT8 PE=2 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 2.232e-10 Identity = 44/102 (43.14%), Postives = 48/102 (47.06%), Query Frame = 1 Query: 385 YECKTCNKTFSSFQALGGHMASHKKPKMTLEEKKLPPSLSSSGIFKIKEANQTHIKSSPQIPTSLQLGCPNNKTFDGNKSKFHECSICGAEFTSGQALGGHM 690 + CKTC K FSSFQALGGH ASHKK L +S S P + SL N KT + H C ICG EF GQALGGHM Sbjct: 37 FRCKTCLKEFSSFQALGGHRASHKK-------------LINS--------------SDPSLLGSLS----NKKT---KTATSHPCPICGVEFPMGQALGGHM 104
BLAST of rna-TanjilR_04321 vs. DB:Swiss
Match: ZAT6_ARATH (Zinc finger protein ZAT6 OS=Arabidopsis thaliana OX=3702 GN=ZAT6 PE=2 SV=1) HSP 1 Score: 56.225 bits (134), Expect = 6.174e-8 Identity = 48/164 (29.27%), Postives = 68/164 (41.46%), Query Frame = 1 Query: 199 FDK-TRNEEEDMANCLILLAGGKREGNDARNNKNMXXXXXXXXXXXXXXXXXXXXXXKIGFYDYECKTCNKTFSSFQALGGHMASHKKPKMTLEEKKLPPSLSSSGIFKIKEANQTHIKSSPQIPTSLQLGCPNNKTFDGNKSKFHECSICGAEFTSGQALGGH 687 FD+ + E+E +A CL+LLA R+G+ R+ + + + Y+C C+K FSS+QALGGH ASH+ K + T ++ TS + G K H CSIC F +GQALGGH Sbjct: 41 FDRQSLTEDEYIALCLMLLA---RDGDRNRDLDLPSSSSSPPLLPPLPTPI------------YKCSVCDKAFSSYQALGGHKASHR-----------------------KSFSLTQSAGGDELSTSSAITTSGISGGGGGSVKSHVCSICHKSFATGQALGGH 166
BLAST of rna-TanjilR_04321 vs. DB:Swiss
Match: ZAT10_ARATH (Zinc finger protein ZAT10 OS=Arabidopsis thaliana OX=3702 GN=ZAT10 PE=2 SV=1) HSP 1 Score: 54.6842 bits (130), Expect = 1.853e-7 Identity = 48/157 (30.57%), Postives = 60/157 (38.22%), Query Frame = 1 Query: 217 EEEDMANCLILLAGGKREGNDARNNKNMXXXXXXXXXXXXXXXXXXXXXXKIGFYDYECKTCNKTFSSFQALGGHMASHKKPKMTLEEKKLPPSLSSSGIFKIKEANQTHIKSSPQIPTSLQLGCPNNKTFDGNKSKFHECSICGAEFTSGQALGGH 687 EEE +A CL+LLA R+N+ + Y+C C+KTFSS+QALGGH ASH+ K L +LS G + T K H C+IC F SGQALGGH Sbjct: 51 EEEYLAFCLMLLA---------RDNRQ------------------PPPPPAVEKLSYKCSVCDKTFSSYQALGGHKASHR--------KNLSQTLSGGGDDHSTSSATT------------------TSAVTTGSGKSHVCTICNKSFPSGQALGGH 154
BLAST of rna-TanjilR_04321 vs. DB:Swiss
Match: ZAT3_ARATH (Zinc finger protein ZAT3 OS=Arabidopsis thaliana OX=3702 GN=ZAT3 PE=1 SV=1) HSP 1 Score: 54.299 bits (129), Expect = 3.318e-7 Identity = 51/155 (32.90%), Postives = 65/155 (41.94%), Query Frame = 1 Query: 385 YECKTCNKTFSSFQALGGHMASHKKPKMTLEEKKLPPSLSSSGIFKIKEANQTHIKSSPQIPTSLQLGCPNNK--TFDGNKSKFHECSICGAEFTSGQALGGHMXXXXXXXXXXXXXXXXXXFDATSTTIEVKPRNVLEFDLNLPAPDEDISDSN 843 +EC C K F S QALGGH ASHK K G F I T++ P ++ K TF G+ H+C+IC F+SGQALGGHMR H E +P DLN+P +D+S S+ Sbjct: 162 FECGGCKKVFGSHQALGGHRASHKNVK---------------GCFAI-----TNVTDDPMTVSTSSGHDHQGKILTFSGH----HKCNICFRVFSSGQALGGHMRCHWEK--------------------EEEPMISGALDLNVPPTIQDLSTSD 272 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_04321 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_04321_La_Tanjil_v1.0 ID=rna-TanjilR_04321_La_Tanjil_v1.0; Name=rna-TanjilR_04321; organism=Lupinus angustifolius; type=mRNA; length=906bpback to top protein sequence of rna-TanjilR_04321_La_Tanjil_v1.0 >rna-TanjilR_04321_La_Tanjil_v1.0 ID=rna-TanjilR_04321_La_Tanjil_v1.0; Name=rna-TanjilR_04321_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=301bpback to top mRNA from alignment at Chr_LG03-CM007363.1:678012..678917+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_04321_La_Tanjil_v1.0 ID=rna-TanjilR_04321_La_Tanjil_v1.0; Name=rna-TanjilR_04321; organism=Lupinus angustifolius; type=mRNA; length=906bp; location=Sequence derived from: Chr_LG03-CM007363.1:678012..678917+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG03-CM007363.1:678012..678917+ >rna-TanjilR_04321_La_Tanjil_v1.0 ID=rna-TanjilR_04321_La_Tanjil_v1.0; Name=rna-TanjilR_04321; organism=Lupinus angustifolius; type=CDS; length=906bp; location=Sequence derived from: Chr_LG03-CM007363.1:678012..678917+ (Lupinus angustifoliusback to top |