Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_04334 | rna-TanjilR_04334_La_Tanjil_v1.0-protein | Lupinus angustifolius | polypeptide |
rna-TanjilR_04334_La_Tanjil_v1.0 | rna-TanjilR_04334_La_Tanjil_v1.0 | Lupinus angustifolius | polypeptide |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_04334_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:787595..787639 | rna-TanjilR_04334_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:787595..787639 | Lupinus angustifolius | exon |
rna-TanjilR_04334_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:787719..787805 | rna-TanjilR_04334_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:787719..787805 | Lupinus angustifolius | exon |
rna-TanjilR_04334_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:787913..788038 | rna-TanjilR_04334_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:787913..788038 | Lupinus angustifolius | exon |
rna-TanjilR_04334_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:788321..788392 | rna-TanjilR_04334_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:788321..788392 | Lupinus angustifolius | exon |
rna-TanjilR_04334_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:789271..789447 | rna-TanjilR_04334_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:789271..789447 | Lupinus angustifolius | exon |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_04334_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:787595..787639 | rna-TanjilR_04334_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:787595..787639 | Lupinus angustifolius | CDS |
rna-TanjilR_04334_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:787719..787805 | rna-TanjilR_04334_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:787719..787805 | Lupinus angustifolius | CDS |
rna-TanjilR_04334_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:787913..788038 | rna-TanjilR_04334_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:787913..788038 | Lupinus angustifolius | CDS |
rna-TanjilR_04334_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:788321..788392 | rna-TanjilR_04334_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:788321..788392 | Lupinus angustifolius | CDS |
rna-TanjilR_04334_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:789271..789447 | rna-TanjilR_04334_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:789271..789447 | Lupinus angustifolius | CDS |
Homology
BLAST of rna-TanjilR_04334 vs. DB:Swiss
Match:
AP2A2_ARATH (AP-2 complex subunit alpha-2 OS=Arabidopsis thaliana OX=3702 GN=ALPHAC-AD PE=1 SV=1)
HSP 1 Score: 72.4034 bits (176), Expect = 5.685e-33
Identity = 31/43 (72.09%), Postives = 40/43 (93.02%), Query Frame = 1
Query: 319 VNVKLRLPAILNKFLQPIPVSAEEFFPQWRSLTGPPLKLQEVV 447
V+ KLR+PA LNKFLQP+ +++EEFFPQWR+++GPPLKLQEVV
Sbjct: 843 VSAKLRIPATLNKFLQPLQLTSEEFFPQWRAISGPPLKLQEVV 885
HSP 2 Score: 54.6842 bits (130), Expect = 5.685e-33
Identity = 23/30 (76.67%), Postives = 28/30 (93.33%), Query Frame = 2
Query: 125 VQCPLEVINLRPSRDVAVVDFSYKFGNDMV 214
VQ PLEV+N+RPSRDVAV+DFSYKFG ++V
Sbjct: 814 VQSPLEVMNIRPSRDVAVLDFSYKFGTNVV 843
HSP 3 Score: 48.9062 bits (115), Expect = 5.685e-33
Identity = 20/27 (74.07%), Postives = 24/27 (88.89%), Query Frame = 2
Query: 545 VRGVKPLPVLEMANLFNSFHLTVSPGL 625
VRGV+PL + EMANLFNSFH+T+ PGL
Sbjct: 885 VRGVRPLALPEMANLFNSFHVTICPGL 911
HSP 4 Score: 28.4906 bits (62), Expect = 5.685e-33
Identity = 12/18 (66.67%), Postives = 17/18 (94.44%), Query Frame = 1
Query: 1 MELSLVPETIPPRAQVRN 54
++LS VP+TIPPRAQV++
Sbjct: 799 LDLSPVPDTIPPRAQVQS 816
BLAST of rna-TanjilR_04334 vs. DB:Swiss
Match:
AP2A1_ARATH (AP-2 complex subunit alpha-1 OS=Arabidopsis thaliana OX=3702 GN=ALPHA-ADR PE=1 SV=1)
HSP 1 Score: 72.4034 bits (176), Expect = 5.183e-32
Identity = 31/43 (72.09%), Postives = 40/43 (93.02%), Query Frame = 1
Query: 319 VNVKLRLPAILNKFLQPIPVSAEEFFPQWRSLTGPPLKLQEVV 447
V+ KLR+PA LNKFLQP+ +++EEFFPQWR+++GPPLKLQEVV
Sbjct: 843 VSAKLRIPATLNKFLQPLQLTSEEFFPQWRAISGPPLKLQEVV 885
HSP 2 Score: 52.7582 bits (125), Expect = 5.183e-32
Identity = 23/30 (76.67%), Postives = 28/30 (93.33%), Query Frame = 2
Query: 125 VQCPLEVINLRPSRDVAVVDFSYKFGNDMV 214
VQ PLEV+N+RPSRDVAV+DFSYKFG ++V
Sbjct: 814 VQSPLEVMNIRPSRDVAVLDFSYKFGANVV 843
HSP 3 Score: 47.3654 bits (111), Expect = 5.183e-32
Identity = 20/27 (74.07%), Postives = 24/27 (88.89%), Query Frame = 2
Query: 545 VRGVKPLPVLEMANLFNSFHLTVSPGL 625
VRGV+PL + EMANLFNSFH+T+ PGL
Sbjct: 885 VRGVRPLALPEMANLFNSFHVTICPGL 911
HSP 4 Score: 28.4906 bits (62), Expect = 5.183e-32
Identity = 12/18 (66.67%), Postives = 17/18 (94.44%), Query Frame = 1
Query: 1 MELSLVPETIPPRAQVRN 54
++LS VP+TIPPRAQV++
Sbjct: 799 LDLSPVPDTIPPRAQVQS 816
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_04334 vs. DB:Swiss
Analysis Date: 2020-01-28 (
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 2
Match Name | E-value | Identity | Description | |
AP2A2_ARATH | 5.685e-33 | 72.09 | AP-2 complex subunit alpha-2 OS=Arabidopsis thalia... | [more] |
AP2A1_ARATH | 5.183e-32 | 72.09 | AP-2 complex subunit alpha-1 OS=Arabidopsis thalia... | [more] |
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Sequences
The
following sequences are available for this feature:
mRNA sequence
>rna-TanjilR_04334_La_Tanjil_v1.0 ID=rna-TanjilR_04334_La_Tanjil_v1.0; Name=rna-TanjilR_04334; organism=Lupinus angustifolius; type=mRNA; length=1853bp
ATGGAGCTCTCACTAGTACCAGAAACTATACCTCCACGGGCACAGGTAAG
AAACCATTGTTTTTGTTGTCTATTGCTCTCAAGTTGTTAGTTTTCTTTAC
ATTTGCCCTCTTTTGGTTTGATAGGTGCAATGCCCACTTGAAGTCATTAA
TCTCCGCCCAAGCAGGGATGTTGCTGTTGTTGACTTCTCCTACAAGTTTG
GTAACGACATGGTACTTAAATTTAAAGATGTGAAGTTAAATGGAGGATTT
TTGCTGCATTTGACATATACAACAGTCATAAAACCTTAATTCATGTATAT
TCATCTGTCATTCCATAGGTCAATGTCAAACTTCGACTTCCTGCCATCCT
AAATAAATTTCTTCAGCCTATACCTGTATCTGCCGAGGAGTTTTTCCCTC
AATGGAGATCACTTACTGGACCACCTTTGAAGCTTCAAGAAGTGGTATGT
ATTCTGCATTAAGTACAAAGTGAAGTTTGTGTGCTCCTTCTTTAGCTTGT
TATTATGGTCATGCAGTGGTTCATCTTTTTCGTTGGTATTTCAGGTTAGA
GGTGTTAAACCACTTCCAGTGCTTGAAATGGCAAACTTATTCAATAGTTT
CCATTTGACAGTTTCTCCTGGGCTTGTATGATATTGAAAATCCCTCTAAT
TTACTTCCccttttcttatatattttctttgaaattcattaacatctatt
aattttttaacttgtttCTGCTTTAGGATCCTAATCCAAACAATCTTGTT
GCGAGCACAACATTCTTTTCAGAAAGTACAAGGGCAATGCTCTGTTTAGT
AAGTATATATGTGAAACTGCATATCATGCATTCCAGTCCCTGCAAATagt
catttattctttaataatctGATATAAAATGGAGTGGAAATGAAGGCAGA
ACTTTCCATCTGCTTTTCAAGATCATAACGATCATTTTCTGTTATTGtct
atattgttttttcttaaagAACCTCCACTTTTAGACAAAAAGACAGTATA
GGGCATTTTTCTCTCCTGGAGAAGCCTTGGATACTTGGAGGGGCCTTGTT
TTTAATTGATTGTCAAAGTTAAACTATGTTAGGTTTATCTGCAAGTCATT
CATGATTGAATTTAGATGATAACATTGGTACTTGTTATGTTTATTAATTG
AATTTCATGTAAATGATAATGCAGATAAGAATTGAAACAGATCCAGCAGA
CAGAACCCAGCTGCGAATGACAGTTGCTTCAGGGGACCCAACACTAACAT
TTGAGTATGTGATGTAGTTTCCTACTCTACCGATTAATTCTGTATAAATT
TTTTCGGGTACAATTTGATATGTTTGGTAAAGTTGAttaaattatgaaga
aaaaaaacttgtGATGGGAAAAAACTATTCACAGAAGCTAGAAGTTTTAA
GCTTATTTAAAAGTTAGATTATTTTGAAACGAAACACATTTTTCCTATCC
TACCCCTTCCTTGTCTATACAAAATACTTCatacctttttattttctttt
gcaaTTTACACTAATTAATATAAAAGCTACTTTTTTACCTATCCAGATGA
AACAACGTATCTTAAAATTTGCTTTTCATCAAACGTATTTGAACATAGAA
CTATTCTGTTTTAATCGCGATTATGCATATAATTGGTTGATGAAAAAATC
TATTTTGGCAGCTACATCTTTTACAGGTAATTTTGATATTGATTTGCAGG
TTGAAGGAATTCATTAAGGAACAATTAATAGTCATCCCAACAGTGACCCA
TGCACCAACTCAAGCACCTCCTGGCCCACCTCCCTTGGCTCAACCGGCTA
GTAATCCGGCAGCATTGACAGATCCTGGGGCAATGCTTGCTGCTCTTCTA
TGA
back to topprotein sequence of rna-TanjilR_04334_La_Tanjil_v1.0
>rna-TanjilR_04334_La_Tanjil_v1.0 ID=rna-TanjilR_04334_La_Tanjil_v1.0; Name=rna-TanjilR_04334_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=168bp
MELSLVPETIPPRAQVQCPLEVINLRPSRDVAVVDFSYKFGNDMVNVKLR
LPAILNKFLQPIPVSAEEFFPQWRSLTGPPLKLQEVDPNPNNLVASTTFF
SESTRAMLCLVILILICRLKEFIKEQLIVIPTVTHAPTQAPPGPPPLAQP
ASNPAALTDPGAMLAALL
back to topmRNA from alignment at Chr_LG03-CM007363.1:787595..789447+
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_04334_La_Tanjil_v1.0 ID=rna-TanjilR_04334_La_Tanjil_v1.0; Name=rna-TanjilR_04334; organism=Lupinus angustifolius; type=mRNA; length=1853bp; location=Sequence derived from: Chr_LG03-CM007363.1:787595..789447+ (Lupinus angustifolius
ATGGAGCTCTCACTAGTACCAGAAACTATACCTCCACGGGCACAGGTAAG
AAACCATTGTTTTTGTTGTCTATTGCTCTCAAGTTGTTAGTTTTCTTTAC
ATTTGCCCTCTTTTGGTTTGATAGGTGCAATGCCCACTTGAAGTCATTAA
TCTCCGCCCAAGCAGGGATGTTGCTGTTGTTGACTTCTCCTACAAGTTTG
GTAACGACATGGTACTTAAATTTAAAGATGTGAAGTTAAATGGAGGATTT
TTGCTGCATTTGACATATACAACAGTCATAAAACCTTAATTCATGTATAT
TCATCTGTCATTCCATAGGTCAATGTCAAACTTCGACTTCCTGCCATCCT
AAATAAATTTCTTCAGCCTATACCTGTATCTGCCGAGGAGTTTTTCCCTC
AATGGAGATCACTTACTGGACCACCTTTGAAGCTTCAAGAAGTGGTATGT
ATTCTGCATTAAGTACAAAGTGAAGTTTGTGTGCTCCTTCTTTAGCTTGT
TATTATGGTCATGCAGTGGTTCATCTTTTTCGTTGGTATTTCAGGTTAGA
GGTGTTAAACCACTTCCAGTGCTTGAAATGGCAAACTTATTCAATAGTTT
CCATTTGACAGTTTCTCCTGGGCTTGTATGATATTGAAAATCCCTCTAAT
TTACTTCCccttttcttatatattttctttgaaattcattaacatctatt
aattttttaacttgtttCTGCTTTAGGATCCTAATCCAAACAATCTTGTT
GCGAGCACAACATTCTTTTCAGAAAGTACAAGGGCAATGCTCTGTTTAGT
AAGTATATATGTGAAACTGCATATCATGCATTCCAGTCCCTGCAAATagt
catttattctttaataatctGATATAAAATGGAGTGGAAATGAAGGCAGA
ACTTTCCATCTGCTTTTCAAGATCATAACGATCATTTTCTGTTATTGtct
atattgttttttcttaaagAACCTCCACTTTTAGACAAAAAGACAGTATA
GGGCATTTTTCTCTCCTGGAGAAGCCTTGGATACTTGGAGGGGCCTTGTT
TTTAATTGATTGTCAAAGTTAAACTATGTTAGGTTTATCTGCAAGTCATT
CATGATTGAATTTAGATGATAACATTGGTACTTGTTATGTTTATTAATTG
AATTTCATGTAAATGATAATGCAGATAAGAATTGAAACAGATCCAGCAGA
CAGAACCCAGCTGCGAATGACAGTTGCTTCAGGGGACCCAACACTAACAT
TTGAGTATGTGATGTAGTTTCCTACTCTACCGATTAATTCTGTATAAATT
TTTTCGGGTACAATTTGATATGTTTGGTAAAGTTGAttaaattatgaaga
aaaaaaacttgtGATGGGAAAAAACTATTCACAGAAGCTAGAAGTTTTAA
GCTTATTTAAAAGTTAGATTATTTTGAAACGAAACACATTTTTCCTATCC
TACCCCTTCCTTGTCTATACAAAATACTTCatacctttttattttctttt
gcaaTTTACACTAATTAATATAAAAGCTACTTTTTTACCTATCCAGATGA
AACAACGTATCTTAAAATTTGCTTTTCATCAAACGTATTTGAACATAGAA
CTATTCTGTTTTAATCGCGATTATGCATATAATTGGTTGATGAAAAAATC
TATTTTGGCAGCTACATCTTTTACAGGTAATTTTGATATTGATTTGCAGG
TTGAAGGAATTCATTAAGGAACAATTAATAGTCATCCCAACAGTGACCCA
TGCACCAACTCAAGCACCTCCTGGCCCACCTCCCTTGGCTCAACCGGCTA
GTAATCCGGCAGCATTGACAGATCCTGGGGCAATGCTTGCTGCTCTTCTA
TGA
back to topCoding sequence (CDS) from alignment at Chr_LG03-CM007363.1:787595..789447+
>rna-TanjilR_04334_La_Tanjil_v1.0 ID=rna-TanjilR_04334_La_Tanjil_v1.0; Name=rna-TanjilR_04334; organism=Lupinus angustifolius; type=CDS; length=507bp; location=Sequence derived from: Chr_LG03-CM007363.1:787595..789447+ (Lupinus angustifolius
ATGGAGCTCTCACTAGTACCAGAAACTATACCTCCACGGGCACAGGTGCA
ATGCCCACTTGAAGTCATTAATCTCCGCCCAAGCAGGGATGTTGCTGTTG
TTGACTTCTCCTACAAGTTTGGTAACGACATGGTCAATGTCAAACTTCGA
CTTCCTGCCATCCTAAATAAATTTCTTCAGCCTATACCTGTATCTGCCGA
GGAGTTTTTCCCTCAATGGAGATCACTTACTGGACCACCTTTGAAGCTTC
AAGAAGTGGATCCTAATCCAAACAATCTTGTTGCGAGCACAACATTCTTT
TCAGAAAGTACAAGGGCAATGCTCTGTTTAGTAATTTTGATATTGATTTG
CAGGTTGAAGGAATTCATTAAGGAACAATTAATAGTCATCCCAACAGTGA
CCCATGCACCAACTCAAGCACCTCCTGGCCCACCTCCCTTGGCTCAACCG
GCTAGTAATCCGGCAGCATTGACAGATCCTGGGGCAATGCTTGCTGCTCT
TCTATGA
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