rna-TanjilR_04503
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_04503 vs. DB:Swiss
Match: UNC13_ARATH (Protein unc-13 homolog OS=Arabidopsis thaliana OX=3702 GN=PATROL1 PE=2 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 5.210e-42 Identity = 100/327 (30.58%), Postives = 162/327 (49.54%), Query Frame = 1
Query: 4930 GNRNTFIPVMPALTRCSKKSKSHGVFRKKE---KSQMTQRRKAHDGTTNGGNSSDIDIP---QLCLRVNTMQRIRMELGVLE---------KRIVAHLSSSKSAADNDIANGVNLKFKLSPAATVESIHQLCECIAYKLVFHDLSHVLWDGLYVGEVSSTRIEAFLQELEQYLEIISSTVHDKVRTRVIVQIMHASFDGFLFVLLAGGPSRAFSLHDSTIIEEDFKLLTDLFWSNGDGLPAELIEKHSTTIRVVLPLFHTDTGYIIQQF-SELTMEMYGSSAKSRLPLPPTAEQWSPREPNTLLRVLCYRNDEAAAKFLKKHYNLPR 5862
+++ +P +P LTR KK + VF KKE + +RR S +ID+P LC+++NT+ +L LE K+ + KS + + F+ S ++ ++CE K++F DL + LY VS +R+E ++ L+ L + S + + +R R++ ++ AS DG L VLL GG SR F +S ++EED ++L + F S GDGLP ++E +R+V+ L +T +I S ++EM K +L + TL+RVLC+RND A++FLKK Y +PR
Sbjct: 795 ASKDDLVPPVPVLTR-YKKETAIKVFVKKELFDSKHLDERR-----------SINIDVPATAMLCVQLNTLHYAVSQLSKLEDSMWLRWIAKKPREKIVIRKSMVEKSKSFNQKESFEGSRKDINAALDRICEFTGTKIIFCDLREPFIENLYKPNVSQSRLEGLIEALDTELGQLCSVIMEPLRDRIVTSLLQASLDGLLRVLLDGGASRVFHPSESKLLEEDVEVLKEFFISGGDGLPRGVVENQVARVRLVVKLHGYETRELIDDLRSRSSLEMQ-QGGKGKLGA----------DTQTLVRVLCHRNDSEASQFLKKQYKIPR 1098 HSP 2 Score: 52.7582 bits (125), Expect = 5.210e-42 Identity = 21/55 (38.18%), Postives = 35/55 (63.64%), Query Frame = 3
Query: 4653 QWNPQANKEGFAPSAVEVLRIVDDTLESFFLLPIPMHAVLLPELMSGLDKSLQQY 4817
W+P + ++ + S VEV RIV++T++ FF L +PM ++ L L G+D + Q Y
Sbjct: 732 HWDPISPQQRYGSSIVEVFRIVEETVDQFFALKVPMRSIELSALFRGIDNAFQVY 786 HSP 3 Score: 116.316 bits (290), Expect = 1.668e-24 Identity = 100/307 (32.57%), Postives = 167/307 (54.40%), Query Frame = 2
Query: 2189 LGRRMELVVLPLELIQQFKSSDFPSQHEYEAWLKRNLKVLEAGLILYPHLPLDKVDNSAQRLRRIIRGALEN---PMDIG--KSTESMQTLRSVVLSLACRSSDGSV-PESCHWADGFPLNLWIYKTLLEACFDLHENTAVIEEIDEVLELTKKTWVMLGINDMLHNICFSWVLFHRYVSTDEVEYDLLFASSNILAEVE-KDTKATKDPFYAKXXX------------XXXXXXXXWAEKRLLTYHDTFHNDNIESMESLVSLAALSAKILAEDI-----SHEYNRKRKEADVACTIVEKYIRSSL 3037
+G+RM+ +++PLEL+ ++F + Y W KR L +L GLI P + + A L+ ++ E+ P G + E +++LR V +SLA R + G + E CHWADG+ LN+ +Y+ LL FD+ + + EE++E+LEL K TW +LGI + +H C++WVLF +YV T E LL + L ++ K+ + ++ + KTL S LS + SWA+K+L YH F ++ ME V++A ++ ++L E+ S+ +R++ E+ V +I + R SL
Sbjct: 287 VGKRMDSLLVPLELLCCVSRTEFSDKKAYLRWQKRQLNMLAEGLINNPVVGFGESGRKATDLKSLLLRIEESESLPSSAGEVQRAECLKSLREVAISLAERPARGDLTGEVCHWADGYHLNVRLYEKLLLCVFDILNDGKLTEEVEEILELLKSTWRVLGITETIHYTCYAWVLFRQYVITS--ERGLLRHAIQQLKKIPLKEQRGPQERLHLKTLKCRVDNEEISFLESFLSPIRSWADKQLGDYHLHFAEGSL-VMEDTVTVAMITWRLLLEESDRAMHSNSSDREQIESYVLSSIKNTFTRMSL 590 HSP 4 Score: 81.6481 bits (200), Expect = 6.613e-14 Identity = 44/131 (33.59%), Postives = 70/131 (53.44%), Query Frame = 3
Query: 3861 LSVLAREITELAYNEKAVFSPRLKRWHPLPAGVAVATLHVCYGKVLKQYVKGITELTPDAIKVLTDADKLEKDLVQIAVEDSVDSEDGGKSIIREMQPYEAEAVVANLVKSWIKIRLDRLGEWVDRNLQKE 4253
L++LA E +L + +F P L + HP + + +H YG LK ++ G LT DA+ V AD LE+ L+++ SV ED +++ PYE E++ LV WI +L R+ WV+R ++E
Sbjct: 603 LALLAEETKKLMKKDSTIFMPILSQRHPQAIAFSASLIHKLYGNKLKPFLDGAEHLTEDAVSVFPAADSLEQYLLELMT--SVCGEDTSGPYFKKLIPYEVESLSGTLVLRWINSQLGRILSWVERAYKQE 731 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_04503 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 1
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_04503_La_Tanjil_v1.0 ID=rna-TanjilR_04503_La_Tanjil_v1.0; Name=rna-TanjilR_04503; organism=Lupinus angustifolius; type=mRNA; length=5871bpback to top protein sequence of rna-TanjilR_04503_La_Tanjil_v1.0 >rna-TanjilR_04503_La_Tanjil_v1.0 ID=rna-TanjilR_04503_La_Tanjil_v1.0; Name=rna-TanjilR_04503_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=936bpback to top mRNA from alignment at Chr_LG03-CM007363.1:1944406..1950276- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_04503_La_Tanjil_v1.0 ID=rna-TanjilR_04503_La_Tanjil_v1.0; Name=rna-TanjilR_04503; organism=Lupinus angustifolius; type=mRNA; length=5871bp; location=Sequence derived from: Chr_LG03-CM007363.1:1944406..1950276- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG03-CM007363.1:1944406..1950276- >rna-TanjilR_04503_La_Tanjil_v1.0 ID=rna-TanjilR_04503_La_Tanjil_v1.0; Name=rna-TanjilR_04503; organism=Lupinus angustifolius; type=CDS; length=2811bp; location=Sequence derived from: Chr_LG03-CM007363.1:1944406..1950276- (Lupinus angustifoliusback to top |