rna-TanjilR_04510

Transcript Overview
Namerna-TanjilR_04510
Unique Namerna-TanjilR_04510_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length543
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG03-CM007363.1supercontigChr_LG03-CM007363.1:2010615..2011157 +Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL089Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL098Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR522Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR530Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR0857Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR0921Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR0933Cicer arietinum ICC 4958 genome v2Cicer arietinum
anccR0917Cajanus cajan Asha genome v1.0Cajanus cajan
ancaR0729Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anccR0944Cajanus cajan Asha genome v1.0Cajanus cajan
anccR0990Cajanus cajan Asha genome v1.0Cajanus cajan
ancaR0784Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0799Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancrR0884Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ancrR0886Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ancrR0941Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpvR0837Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0848Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0866Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0874Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR0711Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0725Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0732Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0737Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR0826Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0831Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0862Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR0687Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR0752Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
antifR0713Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0718Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvfhR0755Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR0775Vicia faba cv. Tiffany genome v1.0Vicia faba
antifR0776Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0786Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvrvR0678Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR0682Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR0716Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR0738Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR0682Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR0691Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR0699Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR0704Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR0796Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR0820Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR0869Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR0670Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0700Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0722Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0736Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR0764Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0776Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0781Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0806Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0820Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR0703Cicer arietinum
ancarR0750Cicer arietinum
ancarR0760Cicer arietinum
ancarR0773Cicer arietinum
anccaR0701Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0707Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR0797Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0809Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0818Vigna umbellata FF25 genome v1.0Vigna umbellata
anccaR0769Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0773Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR0872Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR0759Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0794Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0810Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvstR0805Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0815Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0820Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0830Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvasR0851Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0878Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0892Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0882Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0897Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvunR0679Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR0690Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR0697Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR0703Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR0879Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR0888Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR0907Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR0915Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_04510gene-TanjilG_04510_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_04510rna-TanjilR_04510_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_04510_La_Tanjil_v1.0rna-TanjilR_04510_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_04510_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:2010615..2011157rna-TanjilR_04510_La_Tanjil_v1.0-exon-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:2010615..2011157Lupinus angustifoliusexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_04510_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:2010615..2011157rna-TanjilR_04510_La_Tanjil_v1.0-CDS-Chr_LG03-CM007363.1_La_Tanjil_v1.0-1579734366:2010615..2011157Lupinus angustifoliusCDS


Homology
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BLAST of rna-TanjilR_04510 vs. DB:Swiss
Match: CVIF1_ARATH (Cell wall / vacuolar inhibitor of fructosidase 1 OS=Arabidopsis thaliana OX=3702 GN=C/VIF1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.300e-13
Identity = 45/118 (38.14%), Postives = 64/118 (54.24%), Query Frame = 1 
Query:  112 GMIID-ICNDAPYNFDHCLSVLLQSNP---SADIWGLVVFFVDDMEEKAKDALAKINALQRARSGYNAALDSCRKNYNTILVADIPKAREALKKRDTKISEGPLNDAFNKVQKCETDF 453
            G II+  C + P +F+ C+S LL S+P   SAD  GL +  +D ++  A   L +IN L + R     ALD C + Y TIL AD+P+A EA+ K   K  E  + DA  +   C+  F
Sbjct:   23 GSIIEPTCKETP-DFNLCVS-LLNSDPRGSSADTSGLALILIDKIKGLATKTLNEINGLYKKRPELKRALDECSRRYKTILNADVPEAIEAISKGVPKFGEDGVIDAGVEASVCQGGF 138
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_04510 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
CVIF1_ARATH2.300e-1338.14Cell wall / vacuolar inhibitor of fructosidase 1 O... [more]
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 75..95
IPR006501Pectinesterase inhibitor domainSMARTSM00856PMEI_2coord: 35..172
e-value: 0.0014
score: 27.1
IPR006501Pectinesterase inhibitor domainTIGRFAMTIGR01614TIGR01614coord: 16..165
e-value: 1.8E-14
score: 51.4
IPR006501Pectinesterase inhibitor domainPFAMPF04043PMEIcoord: 42..159
e-value: 1.6E-8
score: 35.1
IPR035513Invertase/pectin methylesterase inhibitor domain superfamilyGENE3D1.20.140.40coord: 35..171
e-value: 1.4E-25
score: 92.2
IPR035513Invertase/pectin methylesterase inhibitor domain superfamilySUPERFAMILY101148Plant invertase/pectin methylesterase inhibitorcoord: 38..172

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_04510_La_Tanjil_v1.0 ID=rna-TanjilR_04510_La_Tanjil_v1.0; Name=rna-TanjilR_04510; organism=Lupinus angustifolius; type=mRNA; length=543bp
ATGACAAGATCTAACTCCTTGGCTCTTATATTCGTCCTTGAAGCAATGTT
TTTGATCATTTCAATAGAAGCAAGACACTCCATAACCTTCCCTCAAAAAC
TATCTAATACTGGCATGATAATAGATATTTGCAATGATGCACCATATAAC
TTTGACCATTGTCTTTCGGTTCTCTTACAAAGTAACCCTTCTGCGGATAT
ATGGGGTCTTGTTGTTTTCTTTGTGGATGATATGGAGGAAAAAGCAAAGG
ATGCATTAGCTAAAATCAATGCACTTCAAAGAGCCAGAAGTGGATATAAT
GCAGCCTTGGATTCTTGTCGTAAGAATTATAATACAATATTGGTAGCTGA
TATTCCAAAAGCCCGAGAAGCATTGAAGAAAAGGGACACCAAGATTTCAG
AAGGTCCTTTAAATGATGCTTTTAATAAGGTTCAAAAATGTGAAACTGAT
TTCCCTAGACAACTCACCCCACAGAATAATCTTATGCGTGATGATGTAGG
CGAtacaatatatatgtttaaattaACGCATGGGCATGCTTAG
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protein sequence of rna-TanjilR_04510_La_Tanjil_v1.0

>rna-TanjilR_04510_La_Tanjil_v1.0 ID=rna-TanjilR_04510_La_Tanjil_v1.0; Name=rna-TanjilR_04510_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=180bp
MTRSNSLALIFVLEAMFLIISIEARHSITFPQKLSNTGMIIDICNDAPYN
FDHCLSVLLQSNPSADIWGLVVFFVDDMEEKAKDALAKINALQRARSGYN
AALDSCRKNYNTILVADIPKAREALKKRDTKISEGPLNDAFNKVQKCETD
FPRQLTPQNNLMRDDVGDTIYMFKLTHGHA
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mRNA from alignment at Chr_LG03-CM007363.1:2010615..2011157+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_04510_La_Tanjil_v1.0 ID=rna-TanjilR_04510_La_Tanjil_v1.0; Name=rna-TanjilR_04510; organism=Lupinus angustifolius; type=mRNA; length=543bp; location=Sequence derived from: Chr_LG03-CM007363.1:2010615..2011157+ (Lupinus angustifolius
ATGACAAGATCTAACTCCTTGGCTCTTATATTCGTCCTTGAAGCAATGTT
TTTGATCATTTCAATAGAAGCAAGACACTCCATAACCTTCCCTCAAAAAC
TATCTAATACTGGCATGATAATAGATATTTGCAATGATGCACCATATAAC
TTTGACCATTGTCTTTCGGTTCTCTTACAAAGTAACCCTTCTGCGGATAT
ATGGGGTCTTGTTGTTTTCTTTGTGGATGATATGGAGGAAAAAGCAAAGG
ATGCATTAGCTAAAATCAATGCACTTCAAAGAGCCAGAAGTGGATATAAT
GCAGCCTTGGATTCTTGTCGTAAGAATTATAATACAATATTGGTAGCTGA
TATTCCAAAAGCCCGAGAAGCATTGAAGAAAAGGGACACCAAGATTTCAG
AAGGTCCTTTAAATGATGCTTTTAATAAGGTTCAAAAATGTGAAACTGAT
TTCCCTAGACAACTCACCCCACAGAATAATCTTATGCGTGATGATGTAGG
CGAtacaatatatatgtttaaattaACGCATGGGCATGCTTAG
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Coding sequence (CDS) from alignment at Chr_LG03-CM007363.1:2010615..2011157+

>rna-TanjilR_04510_La_Tanjil_v1.0 ID=rna-TanjilR_04510_La_Tanjil_v1.0; Name=rna-TanjilR_04510; organism=Lupinus angustifolius; type=CDS; length=543bp; location=Sequence derived from: Chr_LG03-CM007363.1:2010615..2011157+ (Lupinus angustifolius
ATGACAAGATCTAACTCCTTGGCTCTTATATTCGTCCTTGAAGCAATGTT
TTTGATCATTTCAATAGAAGCAAGACACTCCATAACCTTCCCTCAAAAAC
TATCTAATACTGGCATGATAATAGATATTTGCAATGATGCACCATATAAC
TTTGACCATTGTCTTTCGGTTCTCTTACAAAGTAACCCTTCTGCGGATAT
ATGGGGTCTTGTTGTTTTCTTTGTGGATGATATGGAGGAAAAAGCAAAGG
ATGCATTAGCTAAAATCAATGCACTTCAAAGAGCCAGAAGTGGATATAAT
GCAGCCTTGGATTCTTGTCGTAAGAATTATAATACAATATTGGTAGCTGA
TATTCCAAAAGCCCGAGAAGCATTGAAGAAAAGGGACACCAAGATTTCAG
AAGGTCCTTTAAATGATGCTTTTAATAAGGTTCAAAAATGTGAAACTGAT
TTCCCTAGACAACTCACCCCACAGAATAATCTTATGCGTGATGATGTAGG
CGAtacaatatatatgtttaaattaACGCATGGGCATGCTTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR006501Pectinesterase_inhib_dom
IPR035513Invertase/methylesterase_inhib
Vocabulary: Molecular Function
TermDefinition
GO:0004857enzyme inhibitor activity