rna-TanjilR_04577
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_04577 vs. DB:Swiss
Match: WOX1_ARATH (WUSCHEL-related homeobox 1 OS=Arabidopsis thaliana OX=3702 GN=WOX1 PE=2 SV=2) HSP 1 Score: 123.25 bits (308), Expect = 3.705e-29 Identity = 68/100 (68.00%), Postives = 80/100 (80.00%), Query Frame = 2 Query: 575 FEYELIATMADHSRRDQFNFV-----PPVVVSSRWNPTPEQXXXXXXXXXXGTRTPSAEQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQMES 859 F ++ A+ ++R+ PPV+VSSRWNPTP+QLR LEELYR+GTRTPSA+ IQ ITAQLRR+GKIEGKNVFYWFQNHKARERQKRRRQME+ Sbjct: 43 FNMAVVTMTAEQNKRELMMLNSEPQHPPVMVSSRWNPTPDQLRVLEELYRQGTRTPSADHIQQITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQMET 142
BLAST of rna-TanjilR_04577 vs. DB:Swiss
Match: WOX3_ARATH (WUSCHEL-related homeobox 3 OS=Arabidopsis thaliana OX=3702 GN=WOX3 PE=1 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 6.863e-20 Identity = 48/69 (69.57%), Postives = 57/69 (82.61%), Query Frame = 2 Query: 647 VVSSRWNPTPEQXXXXXXXXXXGTRTPSAEQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQM 853 V S+RW PTPEQL LEE+YR G RTP+A QIQ ITA L +G+IEGKNVFYWFQNHKAR+RQK R+++ Sbjct: 4 VASTRWCPTPEQLMILEEMYRSGIRTPNAVQIQQITAHLAFYGRIEGKNVFYWFQNHKARDRQKLRKKL 72
BLAST of rna-TanjilR_04577 vs. DB:Swiss
Match: WOX4_ARATH (WUSCHEL-related homeobox 4 OS=Arabidopsis thaliana OX=3702 GN=WOX4 PE=1 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.017e-19 Identity = 46/65 (70.77%), Postives = 56/65 (86.15%), Query Frame = 2 Query: 653 SSRWNPTPEQXXXXXXXXXXGTRTPSAEQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRR 847 +RWNPT EQ+ LE LY+ G RTP+A+QI+HIT QL ++GKIEGKNVFYWFQNHKARERQK++R Sbjct: 88 GTRWNPTQEQIGILEMLYKGGMRTPNAQQIEHITLQLGKYGKIEGKNVFYWFQNHKARERQKQKR 152
BLAST of rna-TanjilR_04577 vs. DB:Swiss
Match: WOX2_ORYSI (Putative WUSCHEL-related homeobox 2 OS=Oryza sativa subsp. indica OX=39946 GN=WOX2 PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 4.157e-19 Identity = 47/67 (70.15%), Postives = 56/67 (83.58%), Query Frame = 2 Query: 653 SSRWNPTPEQXXXXXXXXXXGTRTPSAEQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQM 853 ++RW PTPEQL LEE+YR G RTP+A QIQ ITA L +G+IEGKNVFYWFQNHKAR+RQK RR++ Sbjct: 25 TTRWCPTPEQLMMLEEMYRGGLRTPNAAQIQQITAHLSTYGRIEGKNVFYWFQNHKARDRQKLRRRL 91
BLAST of rna-TanjilR_04577 vs. DB:Swiss
Match: WOX2_ORYSJ (Putative WUSCHEL-related homeobox 2 OS=Oryza sativa subsp. japonica OX=39947 GN=WOX2 PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 4.610e-19 Identity = 47/67 (70.15%), Postives = 56/67 (83.58%), Query Frame = 2 Query: 653 SSRWNPTPEQXXXXXXXXXXGTRTPSAEQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQM 853 ++RW PTPEQL LEE+YR G RTP+A QIQ ITA L +G+IEGKNVFYWFQNHKAR+RQK RR++ Sbjct: 25 TTRWCPTPEQLMMLEEMYRGGLRTPNAAQIQQITAHLSTYGRIEGKNVFYWFQNHKARDRQKLRRRL 91
BLAST of rna-TanjilR_04577 vs. DB:Swiss
Match: WOX2_ARATH (WUSCHEL-related homeobox 2 OS=Arabidopsis thaliana OX=3702 GN=WOX2 PE=2 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 5.394e-19 Identity = 45/66 (68.18%), Postives = 56/66 (84.85%), Query Frame = 2 Query: 653 SSRWNPTPEQXXXXXXXXXXGTRTPSAEQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQ 850 SSRWNPT +Q+ LE LY+ G RTPSA+QIQ IT +LR +G IEGKNVFYWFQNHKAR+RQK++++ Sbjct: 12 SSRWNPTKDQITLLENLYKEGIRTPSADQIQQITGRLRAYGHIEGKNVFYWFQNHKARQRQKQKQE 77
BLAST of rna-TanjilR_04577 vs. DB:Swiss
Match: WOX6_ARATH (WUSCHEL-related homeobox 6 OS=Arabidopsis thaliana OX=3702 GN=WOX6 PE=2 SV=2) HSP 1 Score: 89.3521 bits (220), Expect = 3.309e-18 Identity = 46/79 (58.23%), Postives = 60/79 (75.95%), Query Frame = 2 Query: 587 LIATMADHSRRDQFNFVPPVVVSSRWNPTPEQXXXXXXXXXXGTRTPSAEQIQHITAQLRRFGKIEGKNVFYWFQNHKA 823 + A+ +H ++ N +P + RWNPTPEQ+ LEELYR GTRTP+ EQIQ I ++LR++G+IEGKNVFYWFQNHKA Sbjct: 38 ITASSGEHDIDERKNNIP-AAATLRWNPTPEQITTLEELYRSGTRTPTTEQIQQIASKLRKYGRIEGKNVFYWFQNHKA 115
BLAST of rna-TanjilR_04577 vs. DB:Swiss
Match: WUS_SOLLC (Protein WUSCHEL OS=Solanum lycopersicum OX=4081 GN=WUS PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 8.094e-18 Identity = 43/65 (66.15%), Postives = 53/65 (81.54%), Query Frame = 2 Query: 653 SSRWNPTPEQX-XXXXXXXXXGTRTPSAEQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRR 844 SSRW PT +Q+ + Y G R+P+AEQIQ I+A+LR++GKIEGKNVFYWFQNHKARERQK+R Sbjct: 24 SSRWTPTSDQIRILKDLYYNNGVRSPTAEQIQRISAKLRQYGKIEGKNVFYWFQNHKARERQKKR 88
BLAST of rna-TanjilR_04577 vs. DB:Swiss
Match: WOX4_ORYSJ (WUSCHEL-related homeobox 4 OS=Oryza sativa subsp. japonica OX=39947 GN=WOX4 PE=2 SV=2) HSP 1 Score: 87.0409 bits (214), Expect = 8.471e-18 Identity = 43/69 (62.32%), Postives = 57/69 (82.61%), Query Frame = 2 Query: 641 PVVVSSRWNPTPEQXXXXXXXXXXGTRTPSAEQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRR 847 P ++RWNP+ EQ++ LE LYR G RTP++ QI+ IT +L ++G+IEGKNVFYWFQNHKARERQK++R Sbjct: 86 PAAGTTRWNPSAEQIKVLEMLYRGGMRTPNSVQIERITEELGKYGRIEGKNVFYWFQNHKARERQKQKR 154
BLAST of rna-TanjilR_04577 vs. DB:Swiss
Match: WOX4_ORYSI (WUSCHEL-related homeobox 4 OS=Oryza sativa subsp. indica OX=39946 GN=WOX4 PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 8.471e-18 Identity = 43/69 (62.32%), Postives = 57/69 (82.61%), Query Frame = 2 Query: 641 PVVVSSRWNPTPEQXXXXXXXXXXGTRTPSAEQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRR 847 P ++RWNP+ EQ++ LE LYR G RTP++ QI+ IT +L ++G+IEGKNVFYWFQNHKARERQK++R Sbjct: 86 PAAGTTRWNPSAEQIKVLEMLYRGGMRTPNSVQIERITEELGKYGRIEGKNVFYWFQNHKARERQKQKR 154 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_04577 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_04577_La_Tanjil_v1.0 ID=rna-TanjilR_04577_La_Tanjil_v1.0; Name=rna-TanjilR_04577; organism=Lupinus angustifolius; type=mRNA; length=2565bpback to top protein sequence of rna-TanjilR_04577_La_Tanjil_v1.0 >rna-TanjilR_04577_La_Tanjil_v1.0 ID=rna-TanjilR_04577_La_Tanjil_v1.0; Name=rna-TanjilR_04577_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=326bpback to top mRNA from alignment at Chr_LG03-CM007363.1:2645514..2648078- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_04577_La_Tanjil_v1.0 ID=rna-TanjilR_04577_La_Tanjil_v1.0; Name=rna-TanjilR_04577; organism=Lupinus angustifolius; type=mRNA; length=2565bp; location=Sequence derived from: Chr_LG03-CM007363.1:2645514..2648078- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG03-CM007363.1:2645514..2648078- >rna-TanjilR_04577_La_Tanjil_v1.0 ID=rna-TanjilR_04577_La_Tanjil_v1.0; Name=rna-TanjilR_04577; organism=Lupinus angustifolius; type=CDS; length=981bp; location=Sequence derived from: Chr_LG03-CM007363.1:2645514..2648078- (Lupinus angustifoliusback to top |