rna-TanjilR_10714
|
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_10714 vs. DB:Swiss
Match: RHF2A_ARATH (E3 ubiquitin-protein ligase RHF2A OS=Arabidopsis thaliana OX=3702 GN=RHF2A PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 9.174e-29 Identity = 39/65 (60.00%), Postives = 51/65 (78.46%), Query Frame = 3
Query: 2097 LVNFLILQLHIG--DSDFEERIIQHLAAAAAMGRAQHLGRREGPRTRSSAHGHPHFLVFSNQPHA 2285
L +F + L +G +++ EERIIQHLAAAAAMGRA+H RREG R+RSS+ GH F+VFS+QP+A
Sbjct: 113 LGDFELQHLPVGVDNAEIEERIIQHLAAAAAMGRARHGVRREGHRSRSSSQGHQQFMVFSSQPNA 177 HSP 2 Score: 56.6102 bits (135), Expect = 9.174e-29 Identity = 25/38 (65.79%), Postives = 29/38 (76.32%), Query Frame = 2
Query: 1913 SQELFEAVEHERSLRDTPSRNAAIFRHPALGDFDFQQV 2026
SQEL EAVE ER+ R P+RNA IFRHP LGDF+ Q +
Sbjct: 84 SQELLEAVEQERNFRFNPTRNATIFRHPTLGDFELQHL 121 HSP 3 Score: 44.2838 bits (103), Expect = 9.174e-29 Identity = 18/25 (72.00%), Postives = 20/25 (80.00%), Query Frame = 1
Query: 1768 CQRSSQCPMCWQPIELKDPTRSVMI 1842
CQRSSQCPMCWQ I LKDPT ++
Sbjct: 64 CQRSSQCPMCWQSISLKDPTSQELL 88 HSP 4 Score: 110.538 bits (275), Expect = 1.580e-24 Identity = 72/163 (44.17%), Postives = 95/163 (58.28%), Query Frame = 3
Query: 3096 SSPVNQDRAGPSEFQSFSDSLRSKLNAVSMRYDFVENSGRAHNSLFLSNQLI*CFRISWLRYKESISKGAKGWRERLFSRSTSMSEVGSEDRREVNVGIASVSPSAESLETRENNRPVGTSLSNHLEDRSITAEARNRNTVEGSG-ENSSHDNTTPDACPAGS 3581
SSP QDRAGPSE QSFS+SL+S+LNAVS RY KESISK + W++RLFSR+TSM+++GSE +REV+ GIA+VS E LETREN+RP S+S+ E+ T E N + +G E+S ++ + C GS
Sbjct: 242 SSPSEQDRAGPSELQSFSESLKSRLNAVSTRY------------------------------KESISKNTRNWKDRLFSRNTSMADLGSEVKREVSAGIATVSRMMERLETRENSRPSTASVSDVSENH--TPETNNEHNRAAAGDEHSVNERGVKETCATGS 372 HSP 5 Score: 93.2041 bits (230), Expect = 9.766e-19 Identity = 49/92 (53.26%), Postives = 55/92 (59.78%), Query Frame = 1
Query: 1 MEGKTET-----HMTSAAAFVEGGIQESCDDACSICLEDFCESDPSTVAFSFCVSLFKQVGLI*KTFAYLFSLIFQVTTCKHEFHLQCILEW 261
MEG ET H+TSAAAFVEGGIQ++CDDACSICLE FCESDPST +T+CKHE+HLQCILEW
Sbjct: 1 MEGAGETTTSEGHLTSAAAFVEGGIQDACDDACSICLESFCESDPST-----------------------------LTSCKHEYHLQCILEW 63 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_10714 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 1
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_10714_La_Tanjil_v1.0 ID=rna-TanjilR_10714_La_Tanjil_v1.0; Name=rna-TanjilR_10714; organism=Lupinus angustifolius; type=mRNA; length=3587bpback to top protein sequence of rna-TanjilR_10714_La_Tanjil_v1.0 >rna-TanjilR_10714_La_Tanjil_v1.0 ID=rna-TanjilR_10714_La_Tanjil_v1.0; Name=rna-TanjilR_10714_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=374bpback to top mRNA from alignment at Chr_LG05-CM007365.1:23926073..23929659+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_10714_La_Tanjil_v1.0 ID=rna-TanjilR_10714_La_Tanjil_v1.0; Name=rna-TanjilR_10714; organism=Lupinus angustifolius; type=mRNA; length=3587bp; location=Sequence derived from: Chr_LG05-CM007365.1:23926073..23929659+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG05-CM007365.1:23926073..23929659+ >rna-TanjilR_10714_La_Tanjil_v1.0 ID=rna-TanjilR_10714_La_Tanjil_v1.0; Name=rna-TanjilR_10714; organism=Lupinus angustifolius; type=CDS; length=1125bp; location=Sequence derived from: Chr_LG05-CM007365.1:23926073..23929659+ (Lupinus angustifoliusback to top |