rna-TanjilR_20455
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_20455 vs. DB:Swiss
Match: ACR10_ARATH (ACT domain-containing protein ACR10 OS=Arabidopsis thaliana OX=3702 GN=ACR10 PE=2 SV=1) HSP 1 Score: 286.574 bits (732), Expect = 2.607e-86 Identity = 161/346 (46.53%), Postives = 197/346 (56.94%), Query Frame = 2
Query: 1901 FCIYIRELLHTKKRKDDTIEQLTTILKDALLTIDIELVGPEIPACSQASSFLPPSITEDIFDLDLPDSARSGTFTSDSVSVVMDNSLSPAHTLIQIMCHDHKGLLYDIMRTLKDYNIQV**FRK*QIKLSETCIYADQLDNVISVKWILSYATFVCENDIVMFTLSFKQISYGRFTSKPRRKCEIDLFIVQTDGKKIVDSSKQKSLSARLRTELIRPLRVAVVSRGPDSELLVANPVELSGKGRPLVFYDITLALKMLDTGIFSVFI*HNISLCSLALSGFVVHITLFFLACHYFN*LFRQAEIGRHVIGDREWEVYRILLDEGEGLSVPRNKIEKGVWKMLMGWE 2938
F RELL T KR+++ E L + D++++ DIELVGPEI ACS +SS + E +F D+ SG TS +VS+ +DNSLS AHTLI I C DHKGLLYDIMRT KD+NI QISYGRFT K + CEIDLFIVQ+DG+KI+DSSK +L RLR EL +PLRV +++RGPD+ELLV NPVELSGKGRP VF+DI LALK +DT IFS AEIGRHV GDREWEVY++L++E + L +PR+KIE+ VWK LMGWE
Sbjct: 158 FVTDTRELLGTVKRRNEVYEYLRDAIGDSMISYDIELVGPEITACSTSSS-----VAETLFSSDVSGEHSSGLHTSSNVSIAVDNSLSSAHTLIHITCQDHKGLLYDIMRTFKDFNI---------------------------------------------------QISYGRFTIKLGKNCEIDLFIVQSDGRKILDSSKLNALITRLRAELQQPLRVVMMNRGPDTELLVTNPVELSGKGRPQVFHDIALALKKIDTCIFS-------------------------------------AEIGRHVTGDREWEVYKVLINEEDSLPIPRSKIEEEVWKTLMGWE 410 HSP 2 Score: 98.9821 bits (245), Expect = 1.675e-20 Identity = 49/76 (64.47%), Postives = 58/76 (76.32%), Query Frame = 1
Query: 397 DVSTDGKWCYLVFWVVGKPKTRWSLLKKRLIGACPTCSSASGISY-YCTD--LNPPKPPNVFLLKFSCHDRRGLLH 615
DVSTDGKWCYLVFWV+GKP TRW+LLK RL+ A P+ S A GIS Y +D PPK P++FLLK +C DR GLL+
Sbjct: 52 DVSTDGKWCYLVFWVIGKPNTRWNLLKMRLVEASPSFSWAFGISRCYLSDSESQPPKLPDLFLLKLACSDRTGLLY 127 HSP 3 Score: 86.6557 bits (213), Expect = 1.563e-16 Identity = 39/51 (76.47%), Postives = 45/51 (88.24%), Query Frame = 1
Query: 1 MGILHDDVVIIRPPEKEGDTTVLTVNCPDKTGLGCDLCRIILFFGVTILRG 153
MGIL DDVVII EKEGD +V+T+NCPDKTGLGCDLCRI+LFFG+ I+RG
Sbjct: 1 MGILSDDVVIISQSEKEGDPSVITINCPDKTGLGCDLCRILLFFGLNIVRG 51 HSP 4 Score: 60.8474 bits (146), Expect = 2.824e-8 Identity = 28/36 (77.78%), Postives = 34/36 (94.44%), Query Frame = 2
Query: 1322 DVTEVLCELELTIKKVKVSTTPDGKVVDLFFITDTR 1429
DVTEVL +LE+ I+KVK+STTPDGKV+DLFF+TDTR
Sbjct: 128 DVTEVLYKLEINIEKVKISTTPDGKVMDLFFVTDTR 163
BLAST of rna-TanjilR_20455 vs. DB:Swiss
Match: ACR9_ARATH (ACT domain-containing protein ACR9 OS=Arabidopsis thaliana OX=3702 GN=ACR9 PE=2 SV=1) HSP 1 Score: 211.46 bits (537), Expect = 6.967e-59 Identity = 130/343 (37.90%), Postives = 173/343 (50.44%), Query Frame = 2
Query: 1919 ELLHTKKRKDDTIEQLTTILKDALLTIDIELVGPEIPACSQASSFLPPSITEDIFDLDLPDSARSGTFTSDSVSVVMDNSLSPAHTLIQIMCHDHKGLLYDIMRTLKDYNIQV**FRK*QIKLSETCIYADQLDNVISVKWILSYATFVCENDIVMFTLSFKQISYGRFTSKPRRKCEIDLFIVQTDGKKIVDSSKQKSLSARLRTELIRPLRVAVVSRGPDSELLVANPVELSGKGRPLVFYDITLALKMLDTGIFSVFI*HNISLCSLALSGFVVHITLFFLACHYFN*LFRQAEIGRHVIGDREWEVYRILLDEGEGLSV----PRNKIEKGVWKMLMGW 2935
+LLHTK+R+ T + LT +L + ++ ++EL GPE+ + + SS LPP +++F PD +S+ + +DN LSPAHTL+QI C D KGL YDI+RT KD ++ I+YGRF+SK + ++LF+ TDG KI+D Q + ARL+ E++ PLRV +V+RGPD+ELLVANPVELSGKGRP VFYD+TLALK L IFS AEIGRH DR+WEVYR LLDE + RN++ V K LMGW
Sbjct: 161 DLLHTKQRQTKTCDHLTAVLGEHGVSCELELAGPELESVQRFSS-LPPLAADELFG---PDGFDISGSSSNKAVLTVDNQLSPAHTLLQIRCVDQKGLFYDILRTSKDCDVH---------------------------------------------------IAYGRFSSKVKGYRNLELFVRGTDGNKIMDPKHQANFCARLKEEMVCPLRVIIVNRGPDTELLVANPVELSGKGRPRVFYDVTLALKSLGICIFS-------------------------------------AEIGRHSTLDRQWEVYRFLLDESREFPLASLRARNQVVDRVTKTLMGW 411 HSP 2 Score: 87.8113 bits (216), Expect = 6.280e-17 Identity = 46/92 (50.00%), Postives = 57/92 (61.96%), Query Frame = 1
Query: 349 VLLFGLICLFFSSWNEDVSTDGKWCYLVFWV---VGKPKTRWSLLKKRLIGACPTCSSASGISYYCTDLNPPKPPNVFLLKFSCHDRRGLLH 615
+L FGL S D STDG+WCY+VFWV + PK W LK RL+ ACP+C G Y+C N KPP+++LLKF C DR+GLLH
Sbjct: 41 ILEFGL-----SITRADFSTDGRWCYIVFWVTPDISSPKIDWDSLKNRLLSACPSCL---GSFYFCLQSNVSKPPSLYLLKFFCRDRKGLLH 124 HSP 3 Score: 68.9366 bits (167), Expect = 9.401e-11 Identity = 32/51 (62.75%), Postives = 40/51 (78.43%), Query Frame = 1
Query: 1 MGILHDDVVIIRPPEKEGDTTVLTVNCPDKTGLGCDLCRIILFFGVTILRG 153
MGIL+DD V+I P + GD TV+TVNCPD++GLG LCRIIL FG++I R
Sbjct: 1 MGILNDDAVLIEPGKISGDPTVVTVNCPDESGLGSTLCRIILEFGLSITRA 51 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_20455 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 2
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_20455_La_Tanjil_v1.0 ID=rna-TanjilR_20455_La_Tanjil_v1.0; Name=rna-TanjilR_20455; organism=Lupinus angustifolius; type=mRNA; length=2941bpback to top protein sequence of rna-TanjilR_20455_La_Tanjil_v1.0 >rna-TanjilR_20455_La_Tanjil_v1.0 ID=rna-TanjilR_20455_La_Tanjil_v1.0; Name=rna-TanjilR_20455_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=412bpback to top mRNA from alignment at Chr_LG05-CM007365.1:24784108..24787048- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_20455_La_Tanjil_v1.0 ID=rna-TanjilR_20455_La_Tanjil_v1.0; Name=rna-TanjilR_20455; organism=Lupinus angustifolius; type=mRNA; length=2941bp; location=Sequence derived from: Chr_LG05-CM007365.1:24784108..24787048- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG05-CM007365.1:24784108..24787048- >rna-TanjilR_20455_La_Tanjil_v1.0 ID=rna-TanjilR_20455_La_Tanjil_v1.0; Name=rna-TanjilR_20455; organism=Lupinus angustifolius; type=CDS; length=1239bp; location=Sequence derived from: Chr_LG05-CM007365.1:24784108..24787048- (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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