rna-TanjilR_28326

Transcript Overview
Namerna-TanjilR_28326
Unique Namerna-TanjilR_28326_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length1524
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG05-CM007365.1supercontigChr_LG05-CM007365.1:26055975..26057498 -Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL171Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL235Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL436Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL493Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR572Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR1075Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR1082Cicer arietinum ICC 4958 genome v2Cicer arietinum
anccR1153Cajanus cajan Asha genome v1.0Cajanus cajan
anccR1164Cajanus cajan Asha genome v1.0Cajanus cajan
ancaR0893Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0899Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancrR1043Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ancrR1072Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpvR1001Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR1051Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR0870Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0904Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR0991Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR0840Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR0865Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
antifR0883Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0890Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR0907Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0916Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvrvR0845Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR0871Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR0825Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR0861Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR0997Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR1018Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR0828Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0834Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR0959Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0978Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR0864Cicer arietinum
ancarR0870Cicer arietinum
anccaR0872Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0884Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR0972Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR1002Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR0913Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0953Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0955Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvstR0996Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR1009Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR1027Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR1040Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvunR0835Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR1040Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anvunR0868Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR1089Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
Cr_07816.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Ca_07684Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
rna-KK1_006762Cajanus cajan Asha genome v1.0Cajanus cajan
jg1657.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vfaba.Tiffany.R1.3g045240.1Vicia faba cv. Tiffany genome v1.0Vicia faba
LR48_mrnaVigan02g139600Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Ca_08921.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Vigan.08G207900.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Phvul.007G156900.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Cc_v2.0_03401.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
evm.model.Chr07.2395.1.6211317cVigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Psat06G0180700-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
PvulFLAVERTChr07.1008Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vigst.08G180700.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vigun07g086200.3Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vum_08G01634.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Va02G047380.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-XM_004494961.2Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
rna-XM_014659176.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
XM_058927504.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vfaba.Hedin2.R1.3g054840.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vigun07g086200.3Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_28326gene-TanjilG_28326_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_28326rna-TanjilR_28326_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_28326_La_Tanjil_v1.0rna-TanjilR_28326_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_28326_La_Tanjil_v1.0-CDS-Chr_LG05-CM007365.1_La_Tanjil_v1.0-1579734366:26055975..26057498rna-TanjilR_28326_La_Tanjil_v1.0-CDS-Chr_LG05-CM007365.1_La_Tanjil_v1.0-1579734366:26055975..26057498Lupinus angustifoliusCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_28326_La_Tanjil_v1.0-exon-Chr_LG05-CM007365.1_La_Tanjil_v1.0-1579734366:26055975..26057498rna-TanjilR_28326_La_Tanjil_v1.0-exon-Chr_LG05-CM007365.1_La_Tanjil_v1.0-1579734366:26055975..26057498Lupinus angustifoliusexon


Homology
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_28326 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008978HSP20-like chaperoneGENE3D2.60.40.790coord: 347..491
e-value: 3.9E-5
score: 25.3
NoneNo IPR availableCDDcd06464ACD_sHsps-likecoord: 377..479
e-value: 2.3631E-5
score: 41.0005

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_28326_La_Tanjil_v1.0 ID=rna-TanjilR_28326_La_Tanjil_v1.0; Name=rna-TanjilR_28326; organism=Lupinus angustifolius; type=mRNA; length=1524bp
ATGGGTGATTCTCTTCTCACTGTTCTCTCAATGGAAAATCATCATCACCG
TTCAACACTTTTGTCAATGGATTCAAGTGCATCTTCTCATGAGGAACTTG
ATTTGGAGATGAATACACAGATCATACTTTCGGGTCCACCGGATATCAAT
TTGCCCCTTTCCGCCGAACGCAGCCCACCGCCTCAGCCATGGAATCCTGA
TCCATGTGATATATTAGATGTTGGTCTTGGTACTCAGGGATATGGGACTG
AAACCTTTCTCAACCTTCCGAAACCTGGTAAGAAATGCACGAAGCGAGTT
GATAGCATATGGGGAGCGTGGTTTTTCTTCCAATTTTACTTTAAGCCCGT
GTTGCATCACAAGTCCAAGTCGAAGGTTATCAAGGATATTAATGGTGTTT
CCGGGTTTGATAAATCTGACCTTAAGCTTGATGTTTTCATGGTTCAGCAC
GACATGGAAAACATGTATATGTGGGTTTTCAAGGACAGGCCTGAAAACGC
GTTGGGGAAGATGCAGCTGAGGAGTTACATGAATGGGCACTCTCGCCAAG
GGGAGCGCCCCTTTCCGTTCAGCCCTGAGAAGGGCTTTGTTCGATCCCAC
AGGATGCAAAGGAAGCATTATAGAGGACTTTCAAACCCTCAATGTGTGCA
TGGCATTGAGGTGGTTTCATCACCCAATTTGATGGGTATCGATAAGGACG
AACAGAAGAGGTGGATGGAACTCACTGGCCGAGATTTGAACTTCAAGATC
CCTCCTGAAGCTAGTGATTTTAGTTCATGGAGAAACCTTCCGAACACTGA
TTTTGAGCTGGACCGACTGCCTCATCCAATTAAGTCTGTTCCTAATCCTC
AGCCTCCTAAAAAACTGCTTAATGGGTCCGGGCTGAATCTGTCAACGCTT
CCAGCTAACCATAGTAACGGTGACACCATTGATCTTTCTCCTGTCAGCAG
CAAGAAGAGGAAGGACTTTTTCTTTTATGGTGGGAATGATGAAGAATGTT
ACTTGGCTGTTAATCCTCCTTCTGGTCGGATTCCAGAGATAGAAATGAAC
CTCACCGAGCCACACTGGTTGAATGACTTTGGCGGCATGATGAAGAATGT
TAGTGGACCCGTCACAGCTGCAAAAACTATCTATGAGGATGAACTAGGTT
ACTTGATTATTATCAGTCTTCCATGTGTGGATCTTCCAAGCGTGAAAGTC
TCTTGGAGGAACACTCTCACTCATGGTATCATAAAAGTTTCTTGTGTGAG
CACATCTGGGAAACCATTTATCAAGAGACATGACAGGACATTCAAGCTTA
CCGATCCCTCACCAGAGCACTGTCCTCCCGGTGAATTTGTTCGTGAAATC
CCTCTTTCAACTCGAATTCCTGAAGATGCAAATATAGAAGCATACTATGA
TGGACCAGGATCTGTGCTCGAGATCATGGTTCCAAAACTTCGCGAGGGAT
CTGAAGAGCACGAAGTTCGTGTCTGTCTTCGCCCACACCTTGGAGGGAAT
GATCTTAATGTTGACTTGAGTTAG
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protein sequence of rna-TanjilR_28326_La_Tanjil_v1.0

>rna-TanjilR_28326_La_Tanjil_v1.0 ID=rna-TanjilR_28326_La_Tanjil_v1.0; Name=rna-TanjilR_28326_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=507bp
MGDSLLTVLSMENHHHRSTLLSMDSSASSHEELDLEMNTQIILSGPPDIN
LPLSAERSPPPQPWNPDPCDILDVGLGTQGYGTETFLNLPKPGKKCTKRV
DSIWGAWFFFQFYFKPVLHHKSKSKVIKDINGVSGFDKSDLKLDVFMVQH
DMENMYMWVFKDRPENALGKMQLRSYMNGHSRQGERPFPFSPEKGFVRSH
RMQRKHYRGLSNPQCVHGIEVVSSPNLMGIDKDEQKRWMELTGRDLNFKI
PPEASDFSSWRNLPNTDFELDRLPHPIKSVPNPQPPKKLLNGSGLNLSTL
PANHSNGDTIDLSPVSSKKRKDFFFYGGNDEECYLAVNPPSGRIPEIEMN
LTEPHWLNDFGGMMKNVSGPVTAAKTIYEDELGYLIIISLPCVDLPSVKV
SWRNTLTHGIIKVSCVSTSGKPFIKRHDRTFKLTDPSPEHCPPGEFVREI
PLSTRIPEDANIEAYYDGPGSVLEIMVPKLREGSEEHEVRVCLRPHLGGN
DLNVDLS
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mRNA from alignment at Chr_LG05-CM007365.1:26055975..26057498-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_28326_La_Tanjil_v1.0 ID=rna-TanjilR_28326_La_Tanjil_v1.0; Name=rna-TanjilR_28326; organism=Lupinus angustifolius; type=mRNA; length=1524bp; location=Sequence derived from: Chr_LG05-CM007365.1:26055975..26057498- (Lupinus angustifolius
ATGGGTGATTCTCTTCTCACTGTTCTCTCAATGGAAAATCATCATCACCG
TTCAACACTTTTGTCAATGGATTCAAGTGCATCTTCTCATGAGGAACTTG
ATTTGGAGATGAATACACAGATCATACTTTCGGGTCCACCGGATATCAAT
TTGCCCCTTTCCGCCGAACGCAGCCCACCGCCTCAGCCATGGAATCCTGA
TCCATGTGATATATTAGATGTTGGTCTTGGTACTCAGGGATATGGGACTG
AAACCTTTCTCAACCTTCCGAAACCTGGTAAGAAATGCACGAAGCGAGTT
GATAGCATATGGGGAGCGTGGTTTTTCTTCCAATTTTACTTTAAGCCCGT
GTTGCATCACAAGTCCAAGTCGAAGGTTATCAAGGATATTAATGGTGTTT
CCGGGTTTGATAAATCTGACCTTAAGCTTGATGTTTTCATGGTTCAGCAC
GACATGGAAAACATGTATATGTGGGTTTTCAAGGACAGGCCTGAAAACGC
GTTGGGGAAGATGCAGCTGAGGAGTTACATGAATGGGCACTCTCGCCAAG
GGGAGCGCCCCTTTCCGTTCAGCCCTGAGAAGGGCTTTGTTCGATCCCAC
AGGATGCAAAGGAAGCATTATAGAGGACTTTCAAACCCTCAATGTGTGCA
TGGCATTGAGGTGGTTTCATCACCCAATTTGATGGGTATCGATAAGGACG
AACAGAAGAGGTGGATGGAACTCACTGGCCGAGATTTGAACTTCAAGATC
CCTCCTGAAGCTAGTGATTTTAGTTCATGGAGAAACCTTCCGAACACTGA
TTTTGAGCTGGACCGACTGCCTCATCCAATTAAGTCTGTTCCTAATCCTC
AGCCTCCTAAAAAACTGCTTAATGGGTCCGGGCTGAATCTGTCAACGCTT
CCAGCTAACCATAGTAACGGTGACACCATTGATCTTTCTCCTGTCAGCAG
CAAGAAGAGGAAGGACTTTTTCTTTTATGGTGGGAATGATGAAGAATGTT
ACTTGGCTGTTAATCCTCCTTCTGGTCGGATTCCAGAGATAGAAATGAAC
CTCACCGAGCCACACTGGTTGAATGACTTTGGCGGCATGATGAAGAATGT
TAGTGGACCCGTCACAGCTGCAAAAACTATCTATGAGGATGAACTAGGTT
ACTTGATTATTATCAGTCTTCCATGTGTGGATCTTCCAAGCGTGAAAGTC
TCTTGGAGGAACACTCTCACTCATGGTATCATAAAAGTTTCTTGTGTGAG
CACATCTGGGAAACCATTTATCAAGAGACATGACAGGACATTCAAGCTTA
CCGATCCCTCACCAGAGCACTGTCCTCCCGGTGAATTTGTTCGTGAAATC
CCTCTTTCAACTCGAATTCCTGAAGATGCAAATATAGAAGCATACTATGA
TGGACCAGGATCTGTGCTCGAGATCATGGTTCCAAAACTTCGCGAGGGAT
CTGAAGAGCACGAAGTTCGTGTCTGTCTTCGCCCACACCTTGGAGGGAAT
GATCTTAATGTTGACTTGAGTTAG
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Coding sequence (CDS) from alignment at Chr_LG05-CM007365.1:26055975..26057498-

>rna-TanjilR_28326_La_Tanjil_v1.0 ID=rna-TanjilR_28326_La_Tanjil_v1.0; Name=rna-TanjilR_28326; organism=Lupinus angustifolius; type=CDS; length=1524bp; location=Sequence derived from: Chr_LG05-CM007365.1:26055975..26057498- (Lupinus angustifolius
ATGGGTGATTCTCTTCTCACTGTTCTCTCAATGGAAAATCATCATCACCG
TTCAACACTTTTGTCAATGGATTCAAGTGCATCTTCTCATGAGGAACTTG
ATTTGGAGATGAATACACAGATCATACTTTCGGGTCCACCGGATATCAAT
TTGCCCCTTTCCGCCGAACGCAGCCCACCGCCTCAGCCATGGAATCCTGA
TCCATGTGATATATTAGATGTTGGTCTTGGTACTCAGGGATATGGGACTG
AAACCTTTCTCAACCTTCCGAAACCTGGTAAGAAATGCACGAAGCGAGTT
GATAGCATATGGGGAGCGTGGTTTTTCTTCCAATTTTACTTTAAGCCCGT
GTTGCATCACAAGTCCAAGTCGAAGGTTATCAAGGATATTAATGGTGTTT
CCGGGTTTGATAAATCTGACCTTAAGCTTGATGTTTTCATGGTTCAGCAC
GACATGGAAAACATGTATATGTGGGTTTTCAAGGACAGGCCTGAAAACGC
GTTGGGGAAGATGCAGCTGAGGAGTTACATGAATGGGCACTCTCGCCAAG
GGGAGCGCCCCTTTCCGTTCAGCCCTGAGAAGGGCTTTGTTCGATCCCAC
AGGATGCAAAGGAAGCATTATAGAGGACTTTCAAACCCTCAATGTGTGCA
TGGCATTGAGGTGGTTTCATCACCCAATTTGATGGGTATCGATAAGGACG
AACAGAAGAGGTGGATGGAACTCACTGGCCGAGATTTGAACTTCAAGATC
CCTCCTGAAGCTAGTGATTTTAGTTCATGGAGAAACCTTCCGAACACTGA
TTTTGAGCTGGACCGACTGCCTCATCCAATTAAGTCTGTTCCTAATCCTC
AGCCTCCTAAAAAACTGCTTAATGGGTCCGGGCTGAATCTGTCAACGCTT
CCAGCTAACCATAGTAACGGTGACACCATTGATCTTTCTCCTGTCAGCAG
CAAGAAGAGGAAGGACTTTTTCTTTTATGGTGGGAATGATGAAGAATGTT
ACTTGGCTGTTAATCCTCCTTCTGGTCGGATTCCAGAGATAGAAATGAAC
CTCACCGAGCCACACTGGTTGAATGACTTTGGCGGCATGATGAAGAATGT
TAGTGGACCCGTCACAGCTGCAAAAACTATCTATGAGGATGAACTAGGTT
ACTTGATTATTATCAGTCTTCCATGTGTGGATCTTCCAAGCGTGAAAGTC
TCTTGGAGGAACACTCTCACTCATGGTATCATAAAAGTTTCTTGTGTGAG
CACATCTGGGAAACCATTTATCAAGAGACATGACAGGACATTCAAGCTTA
CCGATCCCTCACCAGAGCACTGTCCTCCCGGTGAATTTGTTCGTGAAATC
CCTCTTTCAACTCGAATTCCTGAAGATGCAAATATAGAAGCATACTATGA
TGGACCAGGATCTGTGCTCGAGATCATGGTTCCAAAACTTCGCGAGGGAT
CTGAAGAGCACGAAGTTCGTGTCTGTCTTCGCCCACACCTTGGAGGGAAT
GATCTTAATGTTGACTTGAGTTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR008978HSP20-like_chaperone