rna-TanjilR_11632
|
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_11632 vs. DB:Swiss
Match: SIR1_ARATH (NAD-dependent protein deacetylase SRT1 OS=Arabidopsis thaliana OX=3702 GN=SRT1 PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 9.591e-13 Identity = 36/42 (85.71%), Postives = 40/42 (95.24%), Query Frame = 3
Query: 2601 LQREGKALPEISLPFHRAVPSLTHMALVELEKAGILKFVISQ 2726
LQREGK LP+ SLPFHRA+PS+THMALVELE+AGILKFVISQ
Sbjct: 73 LQREGKDLPKASLPFHRAMPSMTHMALVELERAGILKFVISQ 114 HSP 2 Score: 74.3294 bits (181), Expect = 1.146e-11 Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 3
Query: 1686 QSKHLVVFTGAGISTSCGIPDFRGPKGIWTLQ 1781
+SKHLVVFTGAGISTSCGIPDFRGPKGIWTLQ
Sbjct: 43 KSKHLVVFTGAGISTSCGIPDFRGPKGIWTLQ 74 HSP 3 Score: 70.0922 bits (170), Expect = 2.582e-10 Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 2
Query: 3695 YFRDFEVETIGLKETSRRCSDAKCGAKLKDTVLDWE 3802
Y RDFEVETIGLKETSR+CS KCGAKLKDTVLDWE
Sbjct: 149 YLRDFEVETIGLKETSRKCSVEKCGAKLKDTVLDWE 184 HSP 4 Score: 64.6994 bits (156), Expect = 1.026e-8 Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 1
Query: 2995 VDGLHLRSGIPREKLAELHGNSFMETCLSCGAE 3093
VDGLHLRSGIPREKL+ELHG+SFME C SCGAE
Sbjct: 116 VDGLHLRSGIPREKLSELHGDSFMEMCPSCGAE 148 HSP 5 Score: 60.077 bits (144), Expect = 2.925e-7 Identity = 27/34 (79.41%), Postives = 31/34 (91.18%), Query Frame = 1
Query: 1 MSLGYAEKLSYIEDVGNVGMAEHFDPSHVLREKV 102
MSLGYAEKLS+IEDVG VGMAE FDPSH+L+ K+
Sbjct: 1 MSLGYAEKLSFIEDVGQVGMAEFFDPSHLLQCKI 34
BLAST of rna-TanjilR_11632 vs. DB:Swiss
Match: SIR1_ORYSI (NAD-dependent protein deacetylase SRT1 OS=Oryza sativa subsp. indica OX=39946 GN=SRT1 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 3.752e-10 Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 2
Query: 3695 YFRDFEVETIGLKETSRRCSDAKCGAKLKDTVLDWE 3802
Y RDFE+ETIGLK+T RRCSD CGA+LKDTVLDWE
Sbjct: 150 YLRDFEIETIGLKDTPRRCSDKNCGARLKDTVLDWE 185 HSP 2 Score: 68.5514 bits (166), Expect = 8.466e-10 Identity = 30/33 (90.91%), Postives = 32/33 (96.97%), Query Frame = 3
Query: 1686 QSKHLVVFTGAGISTSCGIPDFRGPKGIWTLQV 1784
+SKHLVVFTGAGISTS GIPDFRGPKG+WTLQV
Sbjct: 43 ESKHLVVFTGAGISTSSGIPDFRGPKGVWTLQV 75 HSP 3 Score: 66.6254 bits (161), Expect = 3.072e-9 Identity = 32/40 (80.00%), Postives = 34/40 (85.00%), Query Frame = 3
Query: 2607 REGKALPEISLPFHRAVPSLTHMALVELEKAGILKFVISQ 2726
R GK +P SLPFHRAVP+LTHMALVELEK G LKFVISQ
Sbjct: 76 RSGKGVPGASLPFHRAVPTLTHMALVELEKTGRLKFVISQ 115 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_11632 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 2
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_11632_La_Tanjil_v1.0 ID=rna-TanjilR_11632_La_Tanjil_v1.0; Name=rna-TanjilR_11632; organism=Lupinus angustifolius; type=mRNA; length=11677bpback to top protein sequence of rna-TanjilR_11632_La_Tanjil_v1.0 >rna-TanjilR_11632_La_Tanjil_v1.0 ID=rna-TanjilR_11632_La_Tanjil_v1.0; Name=rna-TanjilR_11632_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=514bpback to top mRNA from alignment at Chr_LG06-CM007366.1:24223123..24234799- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_11632_La_Tanjil_v1.0 ID=rna-TanjilR_11632_La_Tanjil_v1.0; Name=rna-TanjilR_11632; organism=Lupinus angustifolius; type=mRNA; length=11677bp; location=Sequence derived from: Chr_LG06-CM007366.1:24223123..24234799- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG06-CM007366.1:24223123..24234799- >rna-TanjilR_11632_La_Tanjil_v1.0 ID=rna-TanjilR_11632_La_Tanjil_v1.0; Name=rna-TanjilR_11632; organism=Lupinus angustifolius; type=CDS; length=1545bp; location=Sequence derived from: Chr_LG06-CM007366.1:24223123..24234799- (Lupinus angustifoliusback to top |