Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| rna-TanjilR_01322 | rna-TanjilR_01322_La_Tanjil_v1.0-protein | Lupinus angustifolius | polypeptide |
| rna-TanjilR_01322_La_Tanjil_v1.0 | rna-TanjilR_01322_La_Tanjil_v1.0 | Lupinus angustifolius | polypeptide |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| rna-TanjilR_01322_La_Tanjil_v1.0-exon-Chr_LG06-CM007366.1_La_Tanjil_v1.0-1579734366:29689328..29690281 | rna-TanjilR_01322_La_Tanjil_v1.0-exon-Chr_LG06-CM007366.1_La_Tanjil_v1.0-1579734366:29689328..29690281 | Lupinus angustifolius | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| rna-TanjilR_01322_La_Tanjil_v1.0-CDS-Chr_LG06-CM007366.1_La_Tanjil_v1.0-1579734366:29689328..29690281 | rna-TanjilR_01322_La_Tanjil_v1.0-CDS-Chr_LG06-CM007366.1_La_Tanjil_v1.0-1579734366:29689328..29690281 | Lupinus angustifolius | CDS |
Homology
BLAST of rna-TanjilR_01322 vs. DB:Swiss
Match:
FB119_ARATH (F-box protein At2g27310 OS=Arabidopsis thaliana OX=3702 GN=At2g27310 PE=2 SV=1)
HSP 1 Score: 167.162 bits (422), Expect = 6.035e-48
Identity = 113/314 (35.99%), Postives = 170/314 (54.14%), Query Frame = 1
Query: 70 TRLHAHALFSAAATSSDFYRLCTVDNHLWHSITTAMWPSLTDPLAASLISPCINHHRPI-----PM-------ENHSPSQPSELISAVDLYYDGKPLFSKCHVTQTRKG---WFLSSSLWIDILEPNEVVPTRLKFSPNDDVQWLKNLEQKLTLSWIMIDPTRKRAVNLSSGSVVSTRWQTLTEELEVVYAVMIEEEVQCSVKVTCCG----------KVGGEMDVREVSLTMQGMDGRRVMGKDSMVILQRVMEFGNX-XXXXXXXXXXXXXXFCRMKKERGERLLKKYKNFDLVADSTLLAFTVSVLFFCFL 933
TRL L S A TSS LCT + LW ++ WPS+ DP IS + +R P E H P P+ LISAVDLYY G+ ++SK +T KG WFLSS +DIL+P E V TR+++ D W+K++E+ + L+WI+IDP +KRA N+SS VS R LT +LE+ ++ ++ E V CG +VGGE+ VR+V L ++ ++G+ + G+DS+VILQ +++ K + KE YE++ RMK + E ++ K D + + F++ VL + F+
Sbjct: 26 TRLDGPTLASTATTSSYLQTLCT-EEKLWQELSIDTWPSINDPRVVQAISSFPSGYRSFFADSYPFTEHTWQSEKHDP--PTGLISAVDLYYRGEIIYSKVQEMETEKGKSGWFLSSPFRVDILDPKESVQTRIRYPGGDYEAWVKDMEESMKLNWILIDPIKKRAANISSRKAVSARRNWLTGDLEIRFSTVVTAEAAEVAAVVSCGSAEAWKEVDEEVGGEIHVRDVRLQVEDIEGKCMKGRDSLVILQGLLDGKRSCKDDEERRAKERYEEYVRMKIQWRENKERREKAQDTIC--MIFGFSMFVLLWSFI 334
BLAST of rna-TanjilR_01322 vs. DB:Swiss
Match:
FB346_ARATH (F-box protein At3g44326 OS=Arabidopsis thaliana OX=3702 GN=At3g44326 PE=2 SV=1)
HSP 1 Score: 140.198 bits (352), Expect = 1.798e-37
Identity = 93/254 (36.61%), Postives = 134/254 (52.76%), Query Frame = 1
Query: 70 TRLHAHALFSAAATSSDFYRLCTVDNHLWHSITTAMWPSLTDPLAASLISPCINHHR-----PIPMENHS------PS-QPSELISAVDLYYDGKPLFSKCHVTQTRKGWFLSSSLWIDILEPNEVVPTRLKFSPN-DDVQWLKNLEQKLTLSWIMIDPTRKRAVNLSSGSVVSTRWQTLTEELEVVYAVMI-------EEEVQCSVKVTCC-----GKVGGEMDVREVSLTMQGMDGRRVMGKDSMVILQRVM 756
TRL +L + + T S+ C+ D LW +A WPS +D S+IS + HR P H PS SELISAVD++Y +FS+ HVT+T GWFL S + +D++EP E++PTR+ + D W +LE+ L+LSWI+IDPT KRA ++S+ VS LT E+ V ++ + E+V+ +V V + M +REVSL + DGR + GK S+ IL M
Sbjct: 35 TRLDGSSLAALSCTCSNLNSFCS-DESLWRQQCSATWPSTSDTRVQSIISTFPDGHRTFFSDSFPFLEHDVGINLPPSVDTSELISAVDIFYKDDVIFSRVHVTETVSGWFLCSPMRVDLVEPKELIPTRVLVTDQCKDDTWKSDLEENLSLSWILIDPTCKRAADVSTRKPVSVHRHWLTGEVHVKFSSIFVVGNKKRSEQVEFTVTVVLAVFNRREEETAVMQIREVSLVAEDKDGRNLGGKVSLEILVAAM 287
BLAST of rna-TanjilR_01322 vs. DB:Swiss
Match:
FB322_ARATH (Probable F-box protein At2g36090 OS=Arabidopsis thaliana OX=3702 GN=At2g36090 PE=2 SV=1)
HSP 1 Score: 132.494 bits (332), Expect = 5.782e-35
Identity = 89/239 (37.24%), Postives = 131/239 (54.81%), Query Frame = 1
Query: 70 TRLHAHALFSAAATSSDFYRLCTVDNHLWHSITTAMWPS--------LTDPLAASLISPCINH-HRPIPMENHSPSQPSELISAVDLYYDGKPLFSKCHVTQTRKGWFLSSSLWIDILEPNEVVPTRLKFSPNDDVQWLKNLEQKLTLSWIMIDPTRKRAVNLSSGSVVSTRWQTLTEELEVVYAVMIEEEVQCSVKVTCCGKVGGEMDVREVSLTMQGMDGRRVMGKDSMVILQRVME 759
TRL L S + SS + L + + LW I + WPS +D + + ++ RP P ELISAVDL+Y GK +FS+ T+T WF SS L ID+++ + V T +K + ++LE+ LTLSWI+IDP KRA N+SS VS + ++ E+E +A ++ V+C + V CG+ EM VREVSL ++ M+G + G+DS+VIL+ VME
Sbjct: 31 TRLDGATLASVSCASSHLHHLAS-NEILWSKICRSTWPSCSGGSRSFFSDAYSMVETAGTVSDLDRPFP----------ELISAVDLHYRGKLIFSRVVKTETTTAWFKSSPLRIDLVDTKDTVATPIKRRQRTE-DTCRDLEKDLTLSWIVIDPIGKRAANISSHRPVSVQRNWISGEVEAQFATVV-GAVECVITVVTCGE--EEMHVREVSLKVEKMEGTHLNGRDSLVILRSVME 254
The following BLAST results are available for this feature:
Sequences
The
following sequences are available for this feature:
mRNA sequence
>rna-TanjilR_01322_La_Tanjil_v1.0 ID=rna-TanjilR_01322_La_Tanjil_v1.0; Name=rna-TanjilR_01322; organism=Lupinus angustifolius; type=mRNA; length=954bp
ATGGCTCAACTTCACAACAAcacttctctctcttctcttcctCATCACCT
TATTCACTCTCATATCCTCACTCGTCTCCACGCTCATGCTCTCTTCTCCG
CCGCCGCCACCTCTTCCGATTTCTACCGTCTATGCACCGTCGACAACCAC
CTCTGGCATTCCATCACCACCGCCATGTGGCCTTCCCTAACCGACCCACT
TGCTGCTTCCTTAATCTCCCCTTGTATCAATCACCACCGTCCTATTCCGA
TGGAAAACCATTCACCGTCGCAGCCATCAGAGTTAATCTCAGCCGTTGAT
TTATACTACGATGGAAAACCACTCTTTTCGAAATGCCACGTCACCCAGAC
ACGCAAGGGCtggtttctctcttcttctctatGGATAGACATACTCGAAC
CCAACGAGGTGGTCCCCACTCGGTTAAAATTCTCCCCAAACGACGACGTT
CAATGGCTTAAAAACCTCGAACAGAAACTAACGCTGAGCTGGATCATGAT
CGACCCGACGAGAAAACGCGCGGTTAATCTGTCGAGCGGGAGCGTGGTGT
CGACGCGCTGGCAGACGCTGACGGAGGAGTTGGAAGTGGTGTATGCGGTT
ATGATAGAGGAGGAGGTGCAGTGTAGCGTGAAGGTCACGTGCTGTGGGAA
AGTGGGGGGAGAGATGGACGTGAGGGAGGTGAGTTTAACGATGCAGGGTA
TGGATGGGAGGCGCGTGATGGGGAAGGATAGTATGGTAATTTTGCAGAGG
GTAATGGAGTTTGGGAACAGAAAAAGATTGAGTAggaaggaaaagaaaga
gagtTATGAGAAATTTTGTAGGATGAAGAAAgaaaggggagaaaggttgc
tgaagaaatataagaattttGATTTGGTGGCTGATTCTACGCTTCTCGCA
TTCACTGTTTCTGTACTCTTCTTTTGCTTTCTAAGGTATTCTTGGGTTTG
CTAG
back to topprotein sequence of rna-TanjilR_01322_La_Tanjil_v1.0
>rna-TanjilR_01322_La_Tanjil_v1.0 ID=rna-TanjilR_01322_La_Tanjil_v1.0; Name=rna-TanjilR_01322_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=317bp
MAQLHNNTSLSSLPHHLIHSHILTRLHAHALFSAAATSSDFYRLCTVDNH
LWHSITTAMWPSLTDPLAASLISPCINHHRPIPMENHSPSQPSELISAVD
LYYDGKPLFSKCHVTQTRKGWFLSSSLWIDILEPNEVVPTRLKFSPNDDV
QWLKNLEQKLTLSWIMIDPTRKRAVNLSSGSVVSTRWQTLTEELEVVYAV
MIEEEVQCSVKVTCCGKVGGEMDVREVSLTMQGMDGRRVMGKDSMVILQR
VMEFGNRKRLSRKEKKESYEKFCRMKKERGERLLKKYKNFDLVADSTLLA
FTVSVLFFCFLRYSWVC
back to topmRNA from alignment at Chr_LG06-CM007366.1:29689328..29690281+
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_01322_La_Tanjil_v1.0 ID=rna-TanjilR_01322_La_Tanjil_v1.0; Name=rna-TanjilR_01322; organism=Lupinus angustifolius; type=mRNA; length=954bp; location=Sequence derived from: Chr_LG06-CM007366.1:29689328..29690281+ (Lupinus angustifolius
ATGGCTCAACTTCACAACAAcacttctctctcttctcttcctCATCACCT
TATTCACTCTCATATCCTCACTCGTCTCCACGCTCATGCTCTCTTCTCCG
CCGCCGCCACCTCTTCCGATTTCTACCGTCTATGCACCGTCGACAACCAC
CTCTGGCATTCCATCACCACCGCCATGTGGCCTTCCCTAACCGACCCACT
TGCTGCTTCCTTAATCTCCCCTTGTATCAATCACCACCGTCCTATTCCGA
TGGAAAACCATTCACCGTCGCAGCCATCAGAGTTAATCTCAGCCGTTGAT
TTATACTACGATGGAAAACCACTCTTTTCGAAATGCCACGTCACCCAGAC
ACGCAAGGGCtggtttctctcttcttctctatGGATAGACATACTCGAAC
CCAACGAGGTGGTCCCCACTCGGTTAAAATTCTCCCCAAACGACGACGTT
CAATGGCTTAAAAACCTCGAACAGAAACTAACGCTGAGCTGGATCATGAT
CGACCCGACGAGAAAACGCGCGGTTAATCTGTCGAGCGGGAGCGTGGTGT
CGACGCGCTGGCAGACGCTGACGGAGGAGTTGGAAGTGGTGTATGCGGTT
ATGATAGAGGAGGAGGTGCAGTGTAGCGTGAAGGTCACGTGCTGTGGGAA
AGTGGGGGGAGAGATGGACGTGAGGGAGGTGAGTTTAACGATGCAGGGTA
TGGATGGGAGGCGCGTGATGGGGAAGGATAGTATGGTAATTTTGCAGAGG
GTAATGGAGTTTGGGAACAGAAAAAGATTGAGTAggaaggaaaagaaaga
gagtTATGAGAAATTTTGTAGGATGAAGAAAgaaaggggagaaaggttgc
tgaagaaatataagaattttGATTTGGTGGCTGATTCTACGCTTCTCGCA
TTCACTGTTTCTGTACTCTTCTTTTGCTTTCTAAGGTATTCTTGGGTTTG
CTAG
back to topCoding sequence (CDS) from alignment at Chr_LG06-CM007366.1:29689328..29690281+
>rna-TanjilR_01322_La_Tanjil_v1.0 ID=rna-TanjilR_01322_La_Tanjil_v1.0; Name=rna-TanjilR_01322; organism=Lupinus angustifolius; type=CDS; length=954bp; location=Sequence derived from: Chr_LG06-CM007366.1:29689328..29690281+ (Lupinus angustifolius
ATGGCTCAACTTCACAACAAcacttctctctcttctcttcctCATCACCT
TATTCACTCTCATATCCTCACTCGTCTCCACGCTCATGCTCTCTTCTCCG
CCGCCGCCACCTCTTCCGATTTCTACCGTCTATGCACCGTCGACAACCAC
CTCTGGCATTCCATCACCACCGCCATGTGGCCTTCCCTAACCGACCCACT
TGCTGCTTCCTTAATCTCCCCTTGTATCAATCACCACCGTCCTATTCCGA
TGGAAAACCATTCACCGTCGCAGCCATCAGAGTTAATCTCAGCCGTTGAT
TTATACTACGATGGAAAACCACTCTTTTCGAAATGCCACGTCACCCAGAC
ACGCAAGGGCtggtttctctcttcttctctatGGATAGACATACTCGAAC
CCAACGAGGTGGTCCCCACTCGGTTAAAATTCTCCCCAAACGACGACGTT
CAATGGCTTAAAAACCTCGAACAGAAACTAACGCTGAGCTGGATCATGAT
CGACCCGACGAGAAAACGCGCGGTTAATCTGTCGAGCGGGAGCGTGGTGT
CGACGCGCTGGCAGACGCTGACGGAGGAGTTGGAAGTGGTGTATGCGGTT
ATGATAGAGGAGGAGGTGCAGTGTAGCGTGAAGGTCACGTGCTGTGGGAA
AGTGGGGGGAGAGATGGACGTGAGGGAGGTGAGTTTAACGATGCAGGGTA
TGGATGGGAGGCGCGTGATGGGGAAGGATAGTATGGTAATTTTGCAGAGG
GTAATGGAGTTTGGGAACAGAAAAAGATTGAGTAggaaggaaaagaaaga
gagtTATGAGAAATTTTGTAGGATGAAGAAAgaaaggggagaaaggttgc
tgaagaaatataagaattttGATTTGGTGGCTGATTCTACGCTTCTCGCA
TTCACTGTTTCTGTACTCTTCTTTTGCTTTCTAAGGTATTCTTGGGTTTG
CTAG
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