rna-TanjilR_01345
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_01345 vs. DB:Swiss
Match: ATG8B_ORYSJ (Autophagy-related protein 8B OS=Oryza sativa subsp. japonica OX=39947 GN=ATG8B PE=3 SV=2) HSP 1 Score: 69.3218 bits (168), Expect = 1.612e-23 Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 1 Query: 1669 RYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVNN 1773 +YLVPADLTVGQFVYVVRKRIKLSPEKAIFIFV N Sbjct: 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKN 83 HSP 2 Score: 63.5438 bits (153), Expect = 1.612e-23 Identity = 27/31 (87.10%), Postives = 31/31 (100.00%), Query Frame = 3 Query: 1890 AAMMSALYEENKDEDGFLYMTYSGENTFGII 1982 AA+MSA+YEENKDEDGFLYMTYSGENTFG++ Sbjct: 89 AALMSAIYEENKDEDGFLYMTYSGENTFGLL 119
BLAST of rna-TanjilR_01345 vs. DB:Swiss
Match: ATG8B_ORYSI (Autophagy-related protein 8B OS=Oryza sativa subsp. indica OX=39946 GN=ATG8B PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.612e-23 Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 1 Query: 1669 RYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVNN 1773 +YLVPADLTVGQFVYVVRKRIKLSPEKAIFIFV N Sbjct: 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKN 83 HSP 2 Score: 63.5438 bits (153), Expect = 1.612e-23 Identity = 27/31 (87.10%), Postives = 31/31 (100.00%), Query Frame = 3 Query: 1890 AAMMSALYEENKDEDGFLYMTYSGENTFGII 1982 AA+MSA+YEENKDEDGFLYMTYSGENTFG++ Sbjct: 89 AALMSAIYEENKDEDGFLYMTYSGENTFGLL 119
BLAST of rna-TanjilR_01345 vs. DB:Swiss
Match: ATG8D_ARATH (Autophagy-related protein 8d OS=Arabidopsis thaliana OX=3702 GN=ATG8D PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 4.586e-23 Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 1 Query: 1669 RYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVNNI 1776 +YLVPADLTVGQFVYVVRKRIKLSPEKAIFIFV NI Sbjct: 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNI 84 HSP 2 Score: 60.8474 bits (146), Expect = 4.586e-23 Identity = 26/30 (86.67%), Postives = 30/30 (100.00%), Query Frame = 3 Query: 1890 AAMMSALYEENKDEDGFLYMTYSGENTFGI 1979 AA+MSA+YEE+KDEDGFLYM+YSGENTFGI Sbjct: 89 AAIMSAIYEEHKDEDGFLYMSYSGENTFGI 118
BLAST of rna-TanjilR_01345 vs. DB:Swiss
Match: ATG8A_ORYSJ (Autophagy-related protein 8A OS=Oryza sativa subsp. japonica OX=39947 GN=ATG8A PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.172e-22 Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 1 Query: 1669 RYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVNN 1773 +YLVPADLTVGQFVYVVRKRIKLSPEKAIF+FV N Sbjct: 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFVFVKN 83 HSP 2 Score: 61.2326 bits (147), Expect = 1.172e-22 Identity = 26/29 (89.66%), Postives = 29/29 (100.00%), Query Frame = 3 Query: 1890 AAMMSALYEENKDEDGFLYMTYSGENTFG 1976 A++MSA+YEENKDEDGFLYMTYSGENTFG Sbjct: 89 ASLMSAIYEENKDEDGFLYMTYSGENTFG 117
BLAST of rna-TanjilR_01345 vs. DB:Swiss
Match: ATG8A_ORYSI (Autophagy-related protein 8A OS=Oryza sativa subsp. indica OX=39946 GN=ATG8A PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 1.172e-22 Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 1 Query: 1669 RYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVNN 1773 +YLVPADLTVGQFVYVVRKRIKLSPEKAIF+FV N Sbjct: 49 KYLVPADLTVGQFVYVVRKRIKLSPEKAIFVFVKN 83 HSP 2 Score: 61.2326 bits (147), Expect = 1.172e-22 Identity = 26/29 (89.66%), Postives = 29/29 (100.00%), Query Frame = 3 Query: 1890 AAMMSALYEENKDEDGFLYMTYSGENTFG 1976 A++MSA+YEENKDEDGFLYMTYSGENTFG Sbjct: 89 ASLMSAIYEENKDEDGFLYMTYSGENTFG 117
BLAST of rna-TanjilR_01345 vs. DB:Swiss
Match: ATG8C_ORYSJ (Autophagy-related protein 8C OS=Oryza sativa subsp. japonica OX=39947 GN=ATG8C PE=2 SV=1) HSP 1 Score: 65.4698 bits (158), Expect = 1.551e-22 Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 1 Query: 1669 RYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVNN 1773 +YLVPADLTVGQFVYVVRKRIKLS EKAIFIFV N Sbjct: 49 KYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKN 83 HSP 2 Score: 63.929 bits (154), Expect = 1.551e-22 Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 3 Query: 1890 AAMMSALYEENKDEDGFLYMTYSGENTFGIII 1985 AA+MSA+YEENKDEDGFLYMTYSGENTFG+ + Sbjct: 89 AALMSAIYEENKDEDGFLYMTYSGENTFGLFV 120
BLAST of rna-TanjilR_01345 vs. DB:Swiss
Match: ATG8C_ORYSI (Autophagy-related protein 8C OS=Oryza sativa subsp. indica OX=39946 GN=ATG8C PE=3 SV=2) HSP 1 Score: 65.4698 bits (158), Expect = 1.551e-22 Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 1 Query: 1669 RYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVNN 1773 +YLVPADLTVGQFVYVVRKRIKLS EKAIFIFV N Sbjct: 49 KYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKN 83 HSP 2 Score: 63.929 bits (154), Expect = 1.551e-22 Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 3 Query: 1890 AAMMSALYEENKDEDGFLYMTYSGENTFGIII 1985 AA+MSA+YEENKDEDGFLYMTYSGENTFG+ + Sbjct: 89 AALMSAIYEENKDEDGFLYMTYSGENTFGLFV 120
BLAST of rna-TanjilR_01345 vs. DB:Swiss
Match: ATG8C_ARATH (Autophagy-related protein 8c OS=Arabidopsis thaliana OX=3702 GN=ATG8C PE=1 SV=1) HSP 1 Score: 65.0846 bits (157), Expect = 2.228e-22 Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 1 Query: 1669 RYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVNN 1773 +YLVPADLTVGQFVYVVRKRIKLS EKAIF+FV N Sbjct: 49 KYLVPADLTVGQFVYVVRKRIKLSAEKAIFVFVKN 83 HSP 2 Score: 63.929 bits (154), Expect = 2.228e-22 Identity = 27/31 (87.10%), Postives = 31/31 (100.00%), Query Frame = 3 Query: 1890 AAMMSALYEENKDEDGFLYMTYSGENTFGII 1982 AAMMSA+Y+ENKDEDGFLYMTYSGENTFG++ Sbjct: 89 AAMMSAIYDENKDEDGFLYMTYSGENTFGLV 119
BLAST of rna-TanjilR_01345 vs. DB:Swiss
Match: ATG8_GIBZE (Autophagy-related protein 8 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) OX=229533 GN=ATG8 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 1.633e-21 Identity = 31/36 (86.11%), Postives = 35/36 (97.22%), Query Frame = 1 Query: 1669 RYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVNNI 1776 +YLVPADLTVGQFVYV+RKRIKLSPEKAIFIFV+ + Sbjct: 48 KYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEV 83 HSP 2 Score: 57.7658 bits (138), Expect = 1.633e-21 Identity = 24/29 (82.76%), Postives = 29/29 (100.00%), Query Frame = 3 Query: 1890 AAMMSALYEENKDEDGFLYMTYSGENTFG 1976 AA+MS++YEE+KDEDGFLY+TYSGENTFG Sbjct: 88 AALMSSIYEEHKDEDGFLYITYSGENTFG 116
BLAST of rna-TanjilR_01345 vs. DB:Swiss
Match: ATG8_NEUCR (Autophagy-related protein 8 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=apg-6 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 1.701e-21 Identity = 31/36 (86.11%), Postives = 35/36 (97.22%), Query Frame = 1 Query: 1669 RYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVNNI 1776 +YLVPADLTVGQFVYV+RKRIKLSPEKAIFIFV+ + Sbjct: 48 KYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEV 83 HSP 2 Score: 57.7658 bits (138), Expect = 1.701e-21 Identity = 24/29 (82.76%), Postives = 29/29 (100.00%), Query Frame = 3 Query: 1890 AAMMSALYEENKDEDGFLYMTYSGENTFG 1976 AA+MS++YEE+KDEDGFLY+TYSGENTFG Sbjct: 88 AALMSSIYEEHKDEDGFLYITYSGENTFG 116 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_01345 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_01345_La_Tanjil_v1.0 ID=rna-TanjilR_01345_La_Tanjil_v1.0; Name=rna-TanjilR_01345; organism=Lupinus angustifolius; type=mRNA; length=1988bpback to top protein sequence of rna-TanjilR_01345_La_Tanjil_v1.0 >rna-TanjilR_01345_La_Tanjil_v1.0 ID=rna-TanjilR_01345_La_Tanjil_v1.0; Name=rna-TanjilR_01345_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=124bpback to top mRNA from alignment at Chr_LG06-CM007366.1:29864012..29865999- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_01345_La_Tanjil_v1.0 ID=rna-TanjilR_01345_La_Tanjil_v1.0; Name=rna-TanjilR_01345; organism=Lupinus angustifolius; type=mRNA; length=1988bp; location=Sequence derived from: Chr_LG06-CM007366.1:29864012..29865999- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG06-CM007366.1:29864012..29865999- >rna-TanjilR_01345_La_Tanjil_v1.0 ID=rna-TanjilR_01345_La_Tanjil_v1.0; Name=rna-TanjilR_01345; organism=Lupinus angustifolius; type=CDS; length=375bp; location=Sequence derived from: Chr_LG06-CM007366.1:29864012..29865999- (Lupinus angustifoliusback to top |