rna-TanjilR_05942

Transcript Overview
Namerna-TanjilR_05942
Unique Namerna-TanjilR_05942_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length1281
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG06-CM007366.1supercontigChr_LG06-CM007366.1:32142872..32144152 -Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL104Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL236Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL522Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR588Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR595Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR1094Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR1152Cicer arietinum ICC 4958 genome v2Cicer arietinum
anccR1197Cajanus cajan Asha genome v1.0Cajanus cajan
ancaR0920Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0978Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancrR1089Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0838Pisum sativum Cameor genome v1aPisum sativum
anpsR0868Pisum sativum Cameor genome v1aPisum sativum
anpvR1075Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR1167Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR0932Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0994Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR1056Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR1097Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR0940Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR0973Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
antifR0939Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0947Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvrvR0919Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR0884Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR0948Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR1050Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR1055Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR1065Vicia sativa cv. Studenica genome v1.0Vicia sativa
anavjR1016Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR1083Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR0898Cicer arietinum
ancarR0950Cicer arietinum
anccaR0913Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0952Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR1138Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR1141Vigna umbellata FF25 genome v1.0Vigna umbellata
anvasR1144Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvasR1147Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvunR0895Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR1118Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anvunR0956Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR1199Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
PvulFLAVERTChr05.982Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vfaba.Hedin2.R1.1g028600.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Ca_02678Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
evm.model.Chr05.2510Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigan.06G211300.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Va08G066370.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vigun11g165000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Cc_v2.0_23470.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
evm.model.Chr11.1544Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigun05g267400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vigan.07G040900.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Cr_01080.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Cc_v2.0_09169.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Psat05G0795700-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vum_06G01456.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vigun11g165000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Va05G052420.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
LR48_mrnaVigan08g162700Vigna angularis Jingnong 6 genome v1.1Vigna angularis
rna-XM_014663536.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
jg10067.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigun05g267400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Phvul.011G055300.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Ca_00332.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Vfaba.Tiffany.R1.1g019320.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-KK1_013860Cajanus cajan Asha genome v1.0Cajanus cajan
Phvul.005G152200.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-TanjilR_04469Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_05942gene-TanjilG_05942_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_05942rna-TanjilR_05942_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_05942_La_Tanjil_v1.0rna-TanjilR_05942_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_05942_La_Tanjil_v1.0-CDS-Chr_LG06-CM007366.1_La_Tanjil_v1.0-1579734366:32142872..32144152rna-TanjilR_05942_La_Tanjil_v1.0-CDS-Chr_LG06-CM007366.1_La_Tanjil_v1.0-1579734366:32142872..32144152Lupinus angustifoliusCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_05942_La_Tanjil_v1.0-exon-Chr_LG06-CM007366.1_La_Tanjil_v1.0-1579734366:32142872..32144152rna-TanjilR_05942_La_Tanjil_v1.0-exon-Chr_LG06-CM007366.1_La_Tanjil_v1.0-1579734366:32142872..32144152Lupinus angustifoliusexon


Homology
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_05942 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_05942_La_Tanjil_v1.0 ID=rna-TanjilR_05942_La_Tanjil_v1.0; Name=rna-TanjilR_05942; organism=Lupinus angustifolius; type=mRNA; length=1281bp
ATGAATTTAACTGGAACTGAGACTCTCTACATGACACTTGAACCTAAACA
GACATGTCACTTTTGCAATCTTAGAAACCAAGTTTCAGGTATTTACTCCA
AAGTTGAAAACAGTAATTTATCTGATAAGGACAAAAGTTATTATGCTCCA
TTTCTTCTTCTTGGCCTTGCAAATGAGTTCTTAGCTCTTTGGTTGTTCCT
AGTAGCAAGCTCTTGCTTTCTTTTCAGCAAAAATCTCAATTCCTTTGGCA
AGTATAGAATAAAAGCTGCAGAAGAAGTATCTTTACCTGATAGGATTGTC
CCAAATGCAAGGGCAAATATAGAGAACAATGCAACTTGTCATAAGTATGA
TGCTTATTCTGAGATTTCATATTTGGACAAGATTAGTTACTTGGATTCTT
TGCTCAGTATTGAATTAGAGGAAGATACTGTGTGGCTCTCAGATTCAAAA
TCTTATGAACTATGTTCACTTGAGGACCCTTCAACTCCTCTTAGCAGAAA
GTATGATTCTTTGTCTGAAATATTAGATATAGGGTCACCTAATTACTTGG
ATTCTTTGCAAAGTCTTGAAGGAAAAGAAAGTGTTAGAGAGAGTTACTTT
GATTCTTTACTCAGTCTTGAAGATGAAGACACTGAATGGCTCACATTTGA
AGACCCTTCAAGTTCAACCTCTCTTAGCCAAAAGTGTGATTCTTTATCTG
AATCAGATATAGGGTCACCTAGTTACTGGGACTCCTTGCTAAAACTTGAA
GAAAAAGACAATGAATGGACTTATAAGGGAAATTGCAGTGCCCTTTCTTC
TGTCTCTAGTGTTTCTTCACTCACTACTACAGTACAAACAGAAGAGTTCT
TTGGGGATGAACCACTTTTTTGGCCATTTGAAGAGAAACTCAATTGGAAT
TATGAGAAACCATGGACTTCATTTTGTTCCTCACCAAGGAAAAGGCTTGT
GTCTGAAGCTACATCATCACCAACACCAATGATAAAGGAGTGTAAACAAA
AAATCAATGATGCCCTATGTAGTGTAAAAAGCACGTGGTCTAAAAGTTCA
GCTAAGATAGTAGTACCTCTAGAGTGTGAAGATCATCTCAACAAGACTTT
TCTTAATGAAAACTTTGCTTCAAATTTCAATGACCTTCCTTTGGGATTGG
AATATTTGGCTATGGATCAAGTTCTTCCTATTGAGGCATTGATGGGACTC
AAGGAATTTGATGGACATGAAGGGCTTGATACAGAATTTTATGGTGATAA
TGTTTTTATGCTAGACAAATCTCTTCAATAA
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protein sequence of rna-TanjilR_05942_La_Tanjil_v1.0

>rna-TanjilR_05942_La_Tanjil_v1.0 ID=rna-TanjilR_05942_La_Tanjil_v1.0; Name=rna-TanjilR_05942_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=426bp
MNLTGTETLYMTLEPKQTCHFCNLRNQVSGIYSKVENSNLSDKDKSYYAP
FLLLGLANEFLALWLFLVASSCFLFSKNLNSFGKYRIKAAEEVSLPDRIV
PNARANIENNATCHKYDAYSEISYLDKISYLDSLLSIELEEDTVWLSDSK
SYELCSLEDPSTPLSRKYDSLSEILDIGSPNYLDSLQSLEGKESVRESYF
DSLLSLEDEDTEWLTFEDPSSSTSLSQKCDSLSESDIGSPSYWDSLLKLE
EKDNEWTYKGNCSALSSVSSVSSLTTTVQTEEFFGDEPLFWPFEEKLNWN
YEKPWTSFCSSPRKRLVSEATSSPTPMIKECKQKINDALCSVKSTWSKSS
AKIVVPLECEDHLNKTFLNENFASNFNDLPLGLEYLAMDQVLPIEALMGL
KEFDGHEGLDTEFYGDNVFMLDKSLQ
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mRNA from alignment at Chr_LG06-CM007366.1:32142872..32144152-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_05942_La_Tanjil_v1.0 ID=rna-TanjilR_05942_La_Tanjil_v1.0; Name=rna-TanjilR_05942; organism=Lupinus angustifolius; type=mRNA; length=1281bp; location=Sequence derived from: Chr_LG06-CM007366.1:32142872..32144152- (Lupinus angustifolius
ATGAATTTAACTGGAACTGAGACTCTCTACATGACACTTGAACCTAAACA
GACATGTCACTTTTGCAATCTTAGAAACCAAGTTTCAGGTATTTACTCCA
AAGTTGAAAACAGTAATTTATCTGATAAGGACAAAAGTTATTATGCTCCA
TTTCTTCTTCTTGGCCTTGCAAATGAGTTCTTAGCTCTTTGGTTGTTCCT
AGTAGCAAGCTCTTGCTTTCTTTTCAGCAAAAATCTCAATTCCTTTGGCA
AGTATAGAATAAAAGCTGCAGAAGAAGTATCTTTACCTGATAGGATTGTC
CCAAATGCAAGGGCAAATATAGAGAACAATGCAACTTGTCATAAGTATGA
TGCTTATTCTGAGATTTCATATTTGGACAAGATTAGTTACTTGGATTCTT
TGCTCAGTATTGAATTAGAGGAAGATACTGTGTGGCTCTCAGATTCAAAA
TCTTATGAACTATGTTCACTTGAGGACCCTTCAACTCCTCTTAGCAGAAA
GTATGATTCTTTGTCTGAAATATTAGATATAGGGTCACCTAATTACTTGG
ATTCTTTGCAAAGTCTTGAAGGAAAAGAAAGTGTTAGAGAGAGTTACTTT
GATTCTTTACTCAGTCTTGAAGATGAAGACACTGAATGGCTCACATTTGA
AGACCCTTCAAGTTCAACCTCTCTTAGCCAAAAGTGTGATTCTTTATCTG
AATCAGATATAGGGTCACCTAGTTACTGGGACTCCTTGCTAAAACTTGAA
GAAAAAGACAATGAATGGACTTATAAGGGAAATTGCAGTGCCCTTTCTTC
TGTCTCTAGTGTTTCTTCACTCACTACTACAGTACAAACAGAAGAGTTCT
TTGGGGATGAACCACTTTTTTGGCCATTTGAAGAGAAACTCAATTGGAAT
TATGAGAAACCATGGACTTCATTTTGTTCCTCACCAAGGAAAAGGCTTGT
GTCTGAAGCTACATCATCACCAACACCAATGATAAAGGAGTGTAAACAAA
AAATCAATGATGCCCTATGTAGTGTAAAAAGCACGTGGTCTAAAAGTTCA
GCTAAGATAGTAGTACCTCTAGAGTGTGAAGATCATCTCAACAAGACTTT
TCTTAATGAAAACTTTGCTTCAAATTTCAATGACCTTCCTTTGGGATTGG
AATATTTGGCTATGGATCAAGTTCTTCCTATTGAGGCATTGATGGGACTC
AAGGAATTTGATGGACATGAAGGGCTTGATACAGAATTTTATGGTGATAA
TGTTTTTATGCTAGACAAATCTCTTCAATAA
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Coding sequence (CDS) from alignment at Chr_LG06-CM007366.1:32142872..32144152-

>rna-TanjilR_05942_La_Tanjil_v1.0 ID=rna-TanjilR_05942_La_Tanjil_v1.0; Name=rna-TanjilR_05942; organism=Lupinus angustifolius; type=CDS; length=1281bp; location=Sequence derived from: Chr_LG06-CM007366.1:32142872..32144152- (Lupinus angustifolius
ATGAATTTAACTGGAACTGAGACTCTCTACATGACACTTGAACCTAAACA
GACATGTCACTTTTGCAATCTTAGAAACCAAGTTTCAGGTATTTACTCCA
AAGTTGAAAACAGTAATTTATCTGATAAGGACAAAAGTTATTATGCTCCA
TTTCTTCTTCTTGGCCTTGCAAATGAGTTCTTAGCTCTTTGGTTGTTCCT
AGTAGCAAGCTCTTGCTTTCTTTTCAGCAAAAATCTCAATTCCTTTGGCA
AGTATAGAATAAAAGCTGCAGAAGAAGTATCTTTACCTGATAGGATTGTC
CCAAATGCAAGGGCAAATATAGAGAACAATGCAACTTGTCATAAGTATGA
TGCTTATTCTGAGATTTCATATTTGGACAAGATTAGTTACTTGGATTCTT
TGCTCAGTATTGAATTAGAGGAAGATACTGTGTGGCTCTCAGATTCAAAA
TCTTATGAACTATGTTCACTTGAGGACCCTTCAACTCCTCTTAGCAGAAA
GTATGATTCTTTGTCTGAAATATTAGATATAGGGTCACCTAATTACTTGG
ATTCTTTGCAAAGTCTTGAAGGAAAAGAAAGTGTTAGAGAGAGTTACTTT
GATTCTTTACTCAGTCTTGAAGATGAAGACACTGAATGGCTCACATTTGA
AGACCCTTCAAGTTCAACCTCTCTTAGCCAAAAGTGTGATTCTTTATCTG
AATCAGATATAGGGTCACCTAGTTACTGGGACTCCTTGCTAAAACTTGAA
GAAAAAGACAATGAATGGACTTATAAGGGAAATTGCAGTGCCCTTTCTTC
TGTCTCTAGTGTTTCTTCACTCACTACTACAGTACAAACAGAAGAGTTCT
TTGGGGATGAACCACTTTTTTGGCCATTTGAAGAGAAACTCAATTGGAAT
TATGAGAAACCATGGACTTCATTTTGTTCCTCACCAAGGAAAAGGCTTGT
GTCTGAAGCTACATCATCACCAACACCAATGATAAAGGAGTGTAAACAAA
AAATCAATGATGCCCTATGTAGTGTAAAAAGCACGTGGTCTAAAAGTTCA
GCTAAGATAGTAGTACCTCTAGAGTGTGAAGATCATCTCAACAAGACTTT
TCTTAATGAAAACTTTGCTTCAAATTTCAATGACCTTCCTTTGGGATTGG
AATATTTGGCTATGGATCAAGTTCTTCCTATTGAGGCATTGATGGGACTC
AAGGAATTTGATGGACATGAAGGGCTTGATACAGAATTTTATGGTGATAA
TGTTTTTATGCTAGACAAATCTCTTCAATAA
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