rna-TanjilR_05892
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_05892 vs. DB:Swiss
Match: PRX2B_ARATH (Peroxiredoxin-2B OS=Arabidopsis thaliana OX=3702 GN=PRXIIB PE=1 SV=1) HSP 1 Score: 142.51 bits (358), Expect = 2.251e-38 Identity = 65/88 (73.86%), Postives = 79/88 (89.77%), Query Frame = 3 Query: 1533 LNLAVNDPFVMNSWSKTFPENKHVKFLADGSAKYTYALGLELDLTDKGLGVRSKRFALLVDDLQVKVANVENAGEFTVSSAEEIIKAL 1796 + +VNDPFVM +W KT+PENKHVKF+ADGS +YT+ LGLELDL DKGLGVRS+RFALL+DDL+V VANVE+ GEFTVSSA++I+KAL Sbjct: 75 ICFSVNDPFVMKAWGKTYPENKHVKFVADGSGEYTHLLGLELDLKDKGLGVRSRRFALLLDDLKVTVANVESGGEFTVSSADDILKAL 162 HSP 2 Score: 83.5741 bits (205), Expect = 1.558e-17 Identity = 36/51 (70.59%), Postives = 45/51 (88.24%), Query Frame = 1 Query: 1 MAPIAVGDVIPDGTLAYLDDENKPQAVSIHSLAKGKKVIIFGVPGAFTPTC 153 MAPIAVGDV+PDGT+++ D+ ++ Q S+HSLA GKKVI+FGVPGAFTPTC Sbjct: 1 MAPIAVGDVVPDGTISFFDENDQLQTASVHSLAAGKKVILFGVPGAFTPTC 51 HSP 3 Score: 53.1434 bits (126), Expect = 6.310e-7 Identity = 22/28 (78.57%), Postives = 25/28 (89.29%), Query Frame = 3 Query: 642 ISLKHVPGFIERAEELKGKGVDEVICIS 725 S+KHVPGFIE+AEELK KGVDE+IC S Sbjct: 51 CSMKHVPGFIEKAEELKSKGVDEIICFS 78
BLAST of rna-TanjilR_05892 vs. DB:Swiss
Match: PRX2_POPTR (Peroxiredoxin-2 OS=Populus trichocarpa OX=3694 PE=1 SV=1) HSP 1 Score: 142.124 bits (357), Expect = 2.871e-38 Identity = 67/92 (72.83%), Postives = 82/92 (89.13%), Query Frame = 3 Query: 1524 VTE-LNLAVNDPFVMNSWSKTFPENKHVKFLADGSAKYTYALGLELDLTDKGLGVRSKRFALLVDDLQVKVANVENAGEFTVSSAEEIIKAL 1796 VTE L ++VNDPFVM +W+K++PENKHVKFLADGSA YT+ALGLEL+L +KGLG RS+RFALLVDDL+VK AN+E GEFTVSSA++I+K L Sbjct: 71 VTEILCISVNDPFVMKAWAKSYPENKHVKFLADGSATYTHALGLELNLQEKGLGTRSRRFALLVDDLKVKAANIEGGGEFTVSSADDILKDL 162 HSP 2 Score: 85.8853 bits (211), Expect = 2.348e-18 Identity = 38/51 (74.51%), Postives = 45/51 (88.24%), Query Frame = 1 Query: 1 MAPIAVGDVIPDGTLAYLDDENKPQAVSIHSLAKGKKVIIFGVPGAFTPTC 153 MAPIAVGDV+PDG LAY D++++ Q VS+HSL GKKVI+FGVPGAFTPTC Sbjct: 1 MAPIAVGDVLPDGKLAYFDEQDQLQEVSVHSLVAGKKVILFGVPGAFTPTC 51
BLAST of rna-TanjilR_05892 vs. DB:Swiss
Match: PRX2C_ARATH (Peroxiredoxin-2C OS=Arabidopsis thaliana OX=3702 GN=PRXIIC PE=1 SV=1) HSP 1 Score: 141.739 bits (356), Expect = 4.133e-38 Identity = 64/88 (72.73%), Postives = 79/88 (89.77%), Query Frame = 3 Query: 1533 LNLAVNDPFVMNSWSKTFPENKHVKFLADGSAKYTYALGLELDLTDKGLGVRSKRFALLVDDLQVKVANVENAGEFTVSSAEEIIKAL 1796 + +VNDPFVM +W KT+PENKHVKF+ADGS +YT+ LGLELDL DKGLG+RS+RFALL+D+L+V VANVE+ GEFTVSSAE+I+KAL Sbjct: 75 ICFSVNDPFVMKAWGKTYPENKHVKFVADGSGEYTHLLGLELDLKDKGLGIRSRRFALLLDNLKVTVANVESGGEFTVSSAEDILKAL 162 HSP 2 Score: 82.8037 bits (203), Expect = 3.153e-17 Identity = 35/51 (68.63%), Postives = 45/51 (88.24%), Query Frame = 1 Query: 1 MAPIAVGDVIPDGTLAYLDDENKPQAVSIHSLAKGKKVIIFGVPGAFTPTC 153 MAPI VGDV+PDGT+++ D+ ++ Q VS+HS+A GKKVI+FGVPGAFTPTC Sbjct: 1 MAPITVGDVVPDGTISFFDENDQLQTVSVHSIAAGKKVILFGVPGAFTPTC 51
BLAST of rna-TanjilR_05892 vs. DB:Swiss
Match: PRX2D_ARATH (Peroxiredoxin-2D OS=Arabidopsis thaliana OX=3702 GN=PRXIID PE=2 SV=2) HSP 1 Score: 139.813 bits (351), Expect = 1.922e-37 Identity = 64/88 (72.73%), Postives = 78/88 (88.64%), Query Frame = 3 Query: 1533 LNLAVNDPFVMNSWSKTFPENKHVKFLADGSAKYTYALGLELDLTDKGLGVRSKRFALLVDDLQVKVANVENAGEFTVSSAEEIIKAL 1796 + +VNDPFVM +W KT+ ENKHVKF+ADGS +YT+ LGLELDL DKGLG+RS+RFALL+D+L+V VANVEN GEFTVSSAE+I+KAL Sbjct: 75 ICFSVNDPFVMKAWGKTYQENKHVKFVADGSGEYTHLLGLELDLKDKGLGIRSRRFALLLDNLKVTVANVENGGEFTVSSAEDILKAL 162 HSP 2 Score: 83.1889 bits (204), Expect = 2.501e-17 Identity = 35/51 (68.63%), Postives = 45/51 (88.24%), Query Frame = 1 Query: 1 MAPIAVGDVIPDGTLAYLDDENKPQAVSIHSLAKGKKVIIFGVPGAFTPTC 153 MAPI VGDV+PDGT+++ D+ ++ Q VS+HS+A GKKVI+FGVPGAFTPTC Sbjct: 1 MAPITVGDVVPDGTISFFDENDQLQTVSVHSIAAGKKVILFGVPGAFTPTC 51
BLAST of rna-TanjilR_05892 vs. DB:Swiss
Match: PRX2C_ORYSJ (Peroxiredoxin-2C OS=Oryza sativa subsp. japonica OX=39947 GN=PRXIIC PE=1 SV=1) HSP 1 Score: 137.117 bits (344), Expect = 1.699e-36 Identity = 68/113 (60.18%), Postives = 87/113 (76.99%), Query Frame = 3 Query: 1464 ANQHAS--TNQIHELDLLDV*FVTELNLAVNDPFVMNSWSKTFPENKHVKFLADGSAKYTYALGLELDLTDKGLGVRSKRFALLVDDLQVKVANVENAGEFTVSSAEEIIKAL 1796 +NQH NQ +L V + L ++VNDPFVM +W+K++PENKHVKFLADG YT ALGLELDL++KGLG+RS+RFALL D+L+V VAN+E G+FT+S AEEI+KAL Sbjct: 52 SNQHVPGFINQAEQLKAKGVDDI--LLVSVNDPFVMKAWAKSYPENKHVKFLADGLGTYTKALGLELDLSEKGLGIRSRRFALLADNLKVTVANIEEGGQFTISGAEEILKAL 162 HSP 2 Score: 82.0333 bits (201), Expect = 6.316e-17 Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 1 Query: 1 MAPIAVGDVIPDGTLAYLDDENKPQAVSIHSLAKGKKVIIFGVPGAFTPTC 153 MAP+AVGD +PDG L + D E+K Q VS+H LA GKKV++FGVPGAFTPTC Sbjct: 1 MAPVAVGDTLPDGQLGWFDGEDKLQQVSVHGLAAGKKVVLFGVPGAFTPTC 51
BLAST of rna-TanjilR_05892 vs. DB:Swiss
Match: PRX2E_ARATH (Peroxiredoxin-2E, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PRXIIE PE=1 SV=2) HSP 1 Score: 93.5893 bits (231), Expect = 3.423e-20 Identity = 48/88 (54.55%), Postives = 63/88 (71.59%), Query Frame = 3 Query: 1539 LAVNDPFVMNSWSKTFPENKHVKFLADGSAKYTYALGLELDLTDK--GLGVRSKRFALLVDDLQVKVANVENAGEFTVSSAEEIIKAL 1796 ++VND FVM +W K N V L+DG+ ++T LG+ELDL DK GLGVRS+R+A+L DD VKV N+E G FT SSAE+++KAL Sbjct: 147 ISVNDAFVMEAWRKDLGINDEVMLLSDGNGEFTGKLGVELDLRDKPVGLGVRSRRYAILADDGVVKVLNLEEGGAFTNSSAEDMLKAL 234 HSP 2 Score: 60.8474 bits (146), Expect = 3.874e-9 Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = 1 Query: 4 APIAVGDVIPDGTLAYLD-DENKPQAVSIHSLAKGKKVIIFGVPGAFTPTC 153 A I+VGD +PD TL+YLD + V++ SL GKK I+F VPGAFTPTC Sbjct: 71 ASISVGDKLPDSTLSYLDPSTGDVKTVTVSSLTAGKKTILFAVPGAFTPTC 121
BLAST of rna-TanjilR_05892 vs. DB:Swiss
Match: PR2E1_ORYSJ (Peroxiredoxin-2E-1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PRXIIE-1 PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.403e-19 Identity = 46/88 (52.27%), Postives = 63/88 (71.59%), Query Frame = 3 Query: 1539 LAVNDPFVMNSWSKTFPENKHVKFLADGSAKYTYALGLELDLTDK--GLGVRSKRFALLVDDLQVKVANVENAGEFTVSSAEEIIKAL 1796 ++VND FVM +W ++ V L+DG+ + A+G+ELDL+DK GLGVRS+R+ALL +D VKV N+E G FT SSAEE++KAL Sbjct: 145 VSVNDAFVMRAWKESLGVGDEVLLLSDGNGELARAMGVELDLSDKPAGLGVRSRRYALLAEDGVVKVLNLEEGGAFTTSSAEEMLKAL 232 HSP 2 Score: 56.6102 bits (135), Expect = 1.153e-7 Identity = 25/47 (53.19%), Postives = 34/47 (72.34%), Query Frame = 1 Query: 16 VGDVIPDGTLAYLDD-ENKPQAVSIHSLAKGKKVIIFGVPGAFTPTC 153 VGD +PD TL+Y D + + + V++ L GKKV++F VPGAFTPTC Sbjct: 73 VGDKLPDATLSYFDSPDGELKTVTVRDLTAGKKVVLFAVPGAFTPTC 119
BLAST of rna-TanjilR_05892 vs. DB:Swiss
Match: PR2E2_ORYSJ (Peroxiredoxin-2E-2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=PRXIIE-2 PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 3.267e-19 Identity = 48/89 (53.93%), Postives = 65/89 (73.03%), Query Frame = 3 Query: 1539 LAVNDPFVMNSWSKTFP-ENKHVKFLADGSAKYTYALGLELDLTDK--GLGVRSKRFALLVDDLQVKVANVENAGEFTVSSAEEIIKAL 1796 ++VND FVM +W ++ + V L+DG+ + T ALG+E+DL+DK GLGVRS+R+ALL DD VKV N+E G FT SSAEE++KAL Sbjct: 137 VSVNDAFVMRAWKESLGLGDADVLLLSDGNLELTRALGVEMDLSDKPMGLGVRSRRYALLADDGVVKVLNLEEGGAFTTSSAEEMLKAL 225 HSP 2 Score: 57.7658 bits (138), Expect = 4.476e-8 Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = 1 Query: 1 MAPIAVGDVIPDGTLAYLD-DENKPQAVSIHSLAKGKKVIIFGVPGAFTPTC 153 +A IAVGD +PD TL+Y D + + + V++ L G+K ++F VPGAFTPTC Sbjct: 60 VATIAVGDKLPDATLSYFDPADGELKTVTVAELTAGRKAVLFAVPGAFTPTC 111
BLAST of rna-TanjilR_05892 vs. DB:Swiss
Match: PRX2A_ARATH (Peroxiredoxin-2A OS=Arabidopsis thaliana OX=3702 GN=PRXIIA PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.944e-14 Identity = 34/51 (66.67%), Postives = 44/51 (86.27%), Query Frame = 1 Query: 1 MAPIAVGDVIPDGTLAYLDDENKPQAVSIHSLAKGKKVIIFGVPGAFTPTC 153 MAPI VGD +PDG++++ DD+++ Q VS+HSLA GKKVI+FGVPGAF PTC Sbjct: 1 MAPIDVGDFVPDGSISFFDDDDQLQTVSVHSLAAGKKVILFGVPGAFPPTC 51 HSP 2 Score: 79.337 bits (194), Expect = 3.562e-14 Identity = 40/78 (51.28%), Postives = 58/78 (74.36%), Query Frame = 3 Query: 1533 LNLAVNDPFVMNSWSKTFPENKHVKFLADGSAKYTYALGLELDLTDKGLGVRSKRFALLVDDLQVKVANVENAGEFTV 1766 + L+ +DPF++ + S ENKHVKF+ DGS +Y LGLEL++ DKGLGVRS+ FALL+D+L+V V NV + G+ ++ Sbjct: 75 ICLSGDDPFMITACS----ENKHVKFVEDGSGEYIQLLGLELEVKDKGLGVRSRGFALLLDNLKVIVVNVGSGGDCSL 148
BLAST of rna-TanjilR_05892 vs. DB:Swiss
Match: PMPB_CANBO (Putative peroxiredoxin-B OS=Candida boidinii OX=5477 GN=PMPB PE=1 SV=3) HSP 1 Score: 63.5438 bits (153), Expect = 1.670e-10 Identity = 38/91 (41.76%), Postives = 54/91 (59.34%), Query Frame = 3 Query: 1533 LNLAVNDPFVMNSWSKTF--PENKHVKFLADGSAKYTYALGLELDLTDKGLGVRSKRFALLVDDLQ-VKVANVENAGEFTVSSAEEIIKAL 1796 L + NDPFV+ W K + K + F++D + K T LG +DL+ GLG RS R AL+V+ V+ A +EN GE VS+A++II L Sbjct: 77 LVITQNDPFVLKGWKKELGAADAKKLIFVSDPNLKLTKKLGSTIDLSSIGLGTRSGRLALIVNRSGIVEYAAIENGGEVDVSTAQKIIAKL 167 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_05892 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_05892_La_Tanjil_v1.0 ID=rna-TanjilR_05892_La_Tanjil_v1.0; Name=rna-TanjilR_05892; organism=Lupinus angustifolius; type=mRNA; length=1799bpback to top protein sequence of rna-TanjilR_05892_La_Tanjil_v1.0 >rna-TanjilR_05892_La_Tanjil_v1.0 ID=rna-TanjilR_05892_La_Tanjil_v1.0; Name=rna-TanjilR_05892_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=162bpback to top mRNA from alignment at Chr_LG06-CM007366.1:32579679..32581477- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_05892_La_Tanjil_v1.0 ID=rna-TanjilR_05892_La_Tanjil_v1.0; Name=rna-TanjilR_05892; organism=Lupinus angustifolius; type=mRNA; length=1799bp; location=Sequence derived from: Chr_LG06-CM007366.1:32579679..32581477- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG06-CM007366.1:32579679..32581477- >rna-TanjilR_05892_La_Tanjil_v1.0 ID=rna-TanjilR_05892_La_Tanjil_v1.0; Name=rna-TanjilR_05892; organism=Lupinus angustifolius; type=CDS; length=489bp; location=Sequence derived from: Chr_LG06-CM007366.1:32579679..32581477- (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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