rna-TanjilR_05888
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_05888 vs. DB:Swiss
Match: GLOX1_ARATH (Aldehyde oxidase GLOX1 OS=Arabidopsis thaliana OX=3702 GN=GLOX1 PE=2 SV=1) HSP 1 Score: 377.096 bits (967), Expect = 1.970e-117 Identity = 195/423 (46.10%), Postives = 262/423 (61.94%), Query Frame = 3
Query: 1401 YGTQQILANGEFIMIGGRRAFSYEFIPKEGQKSTKAYFFPFLYETSDLDENNLYPFTHLMPDENVFVFANNRSLLLNPNTNKIVRTFPVLTGGSRNYPASGSSALLPIRLDDDKATSLETIKVVL*SIITLKFCIPVLYFLY*VIEILFLF**VEVIICGGNTPDAFITAEGQKVYLPALQDCARMVITDPKPVWDTEVMPSRRTMGDALNLPDGQILLINGAKKGTAGWWDAEEPNLEPALYNPDKPKGQRFKVLNPSGIARMYHSTSALLPSGKIWVAGSNTHNTYRDVDKFPTETRVEAFYPPYLDPNLNNYRPQILQDSSDKNLRYKARFEIHFSVPSGGQITKNDIKITIYAPPFTTHGFSMNQRLVVLNSGNVAQAIKGIYKVGSMAPRFPGVAPPGYYILFVVHRGVPSQGMWVNI 2669
Y TQ L +G FI++GGR A +YE+I EGQ + K Y L +T D +ENNLYPF L D N+F+FANNRS+LL+P TNK+++ FP L GG+RNYP S SSALLPIRL + IP +V++CGG DA+ AE K+Y AL+DCAR+ I KPVW TE MP+ R M D + LP+G+IL+INGAK+G++GW A+EPN P LY P+KP GQRFK L PS I R+YHS + LP GK+ V GSNT+N Y+ ++PTE R+E F PPYLDP L N RP+I+ ++ K ++Y F++ + + K ++ +T+ AP FTTH SMN RL++L NV +++ ++AP +APPGYY+LF V+ GVPS G W+ I
Sbjct: 227 YSTQATLPDGTFIVVGGRDALNYEYILPEGQNNKKLYDSQLLRQTDDPEENNLYPFVWLNTDGNLFIFANNRSILLSPKTNKVLKEFPQLPGGARNYPGSASSALLPIRL-----------------YVQNPAIIPA-----------------DVLVCGGAKQDAYFRAERLKIYDWALKDCARLNINSAKPVWKTETMPTSRVMSDTVILPNGEILIINGAKRGSSGWHLAKEPNFAPLLYKPNKPLGQRFKELAPSTIPRVYHSIAIALPDGKVLVGGSNTNNGYQFNVEYPTELRIEKFSPPYLDPALANMRPRIVNTATPKQIKYGQMFDVKIELKQ-QNVAKENVMVTMLAPSFTTHSVSMNMRLLMLGINNVKNVGGDNHQIQAVAPPSGKLAPPGYYLLFAVYNGVPSVGEWIQI 614 HSP 2 Score: 77.411 bits (189), Expect = 3.910e-13 Identity = 36/87 (41.38%), Postives = 57/87 (65.52%), Query Frame = 1
Query: 169 ETDFKGEWEVINPDSGVSAMQITLMP-TNKIIVYDATVYRTSRLRYPEGVPCVPYIDPNSKQQLEDCFAHAMEYDIETNQVRPLKVC 426
E ++ G+WE+ +SGVSAM LMP NK+ YDAT++R S+++ P GVPC + ++K+ DC+AH++ DI T ++PL +
Sbjct: 91 EMNWPGQWELFMKNSGVSAMHAILMPLINKVQFYDATIWRISQIKLPPGVPCHVF---DAKKNKVDCWAHSVLVDINTGDIKPLALT 174 HSP 3 Score: 58.5362 bits (140), Expect = 2.691e-7 Identity = 25/57 (43.86%), Postives = 37/57 (64.91%), Query Frame = 1
Query: 1042 VQVTVDPWCSSGGLAPDGTLISSGGWNDGSKSLRYIRDSCPDCDFRESIDALQEPRW 1212
+ +T D WCSSGGL +GTL+S+GG+ G+ + RY+ +C +C + E AL RW
Sbjct: 171 LALTTDTWCSSGGLTVNGTLVSTGGFQGGANTARYL-STCENCVWIEYPKALAARRW 226
BLAST of rna-TanjilR_05888 vs. DB:Swiss
Match: GLOX_VITPS (Aldehyde oxidase GLOX OS=Vitis pseudoreticulata OX=231512 GN=GLOX PE=2 SV=1) HSP 1 Score: 280.026 bits (715), Expect = 2.386e-82 Identity = 157/423 (37.12%), Postives = 223/423 (52.72%), Query Frame = 3
Query: 1401 YGTQQILANGEFIMIGGRRAFSYEFIPKEGQKSTKAYFFPFLYETSDLDENNLYPFTHLMPDENVFVFANNRSLLLNPNTNKIVRTFPVLTGGSRNYPASGSSALLPIRLDDDKATSLETIKVVL*SIITLKFCIPVLYFLY*VIEILFLF**VEVIICGGNTPDAFITAEGQKVYLPALQDCARMVITDPKPVWDTEVMPSRRTMGDALNLPDGQILLINGAKKGTAGWWDAEEPNLEPALYNPDKPKGQRFKVLNPSGIARMYHSTSALLPSGKIWVAGSNTHNTYRDVDKFPTETRVEAFYPPYLDPNLNNYRPQILQDSSDKNLRYKARFEIHFSVPSGGQITKNDIKITIYAPPFTTHGFSMNQRLVVLNSGNVAQAIKGIYKVGSMAPRFPGVAPPGYYILFVVHRGVPSQGMWVNI 2669
Y T QIL +G I++GGR A S E+ P + A PFL + D +NLYP+ HL+P+ ++F+FANN++++ + +NK++ +P L GG RNYP++GSS +L + D A +++CGG AFI PA C R+V T P PVW+ E MP R MGD + LP G +L+INGA+ G+ G+ A P P LY P++P G RF L P + RMYHST+ LLP G++ +AGSN H Y+ +FPTE R+EAF P YL + N RP I D S + +R+ +F++ SV +++ + + PF TH FS QRLV L Y++ AP +APPGYY++F V+ GVPS WV +
Sbjct: 149 YATNQILPDGSVIIVGGRAANSVEYYPP---RKGGAVQLPFLSDVEDKQMDNLYPYVHLLPNGHLFIFANNKAVMYDYTSNKVMLEYPPLDGGPRNYPSAGSSVMLALEGDYSMAI---------------------------------------IVVCGGAQFGAFIQKSTDT---PAHGSCGRIVATSPHPVWEMEDMPFGRIMGDMVMLPTGDVLIINGAQAGSQGFELASSPCFFPLLYRPNQPLGLRFMTLTPGTVPRMYHSTANLLPDGRVLIAGSNPHYFYKFAAEFPTELRIEAFSPEYLFADKANIRPVI--DESPEMVRFGEQFDVFVSV---SLPVVGSMEVNLASAPFATHSFSQGQRLVKLTVSPTVPDADERYRIVCTAPPGGKIAPPGYYMMFAVNLGVPSVARWVQL 521 HSP 2 Score: 57.7658 bits (138), Expect = 4.319e-7 Identity = 32/116 (27.59%), Postives = 56/116 (48.28%), Query Frame = 1
Query: 172 TDFKGEWEVINPDSGVSAMQITLMPTNKIIVYDATVYRTSRLRYPEGVPCVPYIDPNSKQQLEDCFAHAMEYDIETNQVRPLKVCVIFLHKQXXXXXXLNKLCNVSQYKKEDSTLR 519
D G WE+I P++G+++M + +++ D T SR P+G C DP + DC+AH++ D+ TN++RPLK+ + C+ Q+ + S L+
Sbjct: 11 ADLPGTWELIVPNAGIASMHTAVTRYGTVVLLDRTNIGPSRKMLPKGH-C--RYDPKDEVLKRDCYAHSVILDLNTNKIRPLKILT-------------DTWCSSGQFLPDGSLLQ 110
BLAST of rna-TanjilR_05888 vs. DB:Swiss
Match: WSCD1_ARTBC (WSC domain-containing protein ARB_07867 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) OX=663331 GN=ARB_07867 PE=1 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 4.109e-39 Identity = 130/436 (29.82%), Postives = 193/436 (44.27%), Query Frame = 3
Query: 1401 YGTQQILANGEFIMIGGRRAF------SYEFIPKEGQKSTKAYFFPFLYETSDLDENNLYPFTHLMPDENVFVFANNRSLLLNPNTNKIVRTFPVLTG------GSRNYPASGSSALLPIRLDDDKATSLETIKVVL*SIITLKFCIPVLYFLY*VIEILFLF**VEVIICGGNTPDAFITAEGQKVYLPALQDCARMVITDPKPVWDTEVMPSRRTMGDALNLPDGQILLINGAKKGTAGWWDAEEPNLEPALYNPDKPKGQRFKVLNPSGIARMYHSTSALLPSGKIWVAGSNTHNTYRDVDKFPTETRVEAFYPPYLDPNLNNYRPQILQDSSDKNLRYKARFEIHFSVPSGGQITKNDIKITIYAPPFTTHGFSMNQRLVVLNSGNVAQAIKGIYKVGSM-APRFPGVAPPGYYILFVVHRGVPSQGMWVNI 2669
Y T ++NG +++GG + E +P+ G F +L T D NNLYP+ +P N+ N + +L+ T V+T P + G G R YP G+ LLP KA E + V +ICGG+TP AL +C + P W E MPS+R + LPDG L++NGA+KG AG+ AE+PNL LY+P KP QR ++ + IARMYHS + L+ G++ V+GS+ + +FP E RVE F PPY+ RP ++K+ Y +++I + SG Q + IKI++ +THG S R + A + ++ AP PPG+++LFV+ PS +V I
Sbjct: 544 YPTAMTMSNGSILVVGGEEGSNGAPVPTLEILPRVG----PVLFMDWLKRT---DPNNLYPYLTPLPGGNILAAYYNEARILDERTFDTVKTLPNIPGAVNNDAGGRTYPLEGTMVLLP-----QKAPYTEPLGV---------------------------------LICGGSTPYGG----------DALDNCVSIQPEVPNAEWVIERMPSKRVLTCMAGLPDGTFLILNGARKGVAGFGLAEDPNLGAVLYDPSKPVNQRMSIMANTTIARMYHSEAILMADGRVLVSGSDPQD-----PRFPQERRVEVFLPPYILSGAR--RPTFT--IANKDWAYGGKYKIKIT--SGNQ---SRIKISLMGMVSSTHGNSFGSRTIF-------PAFSCSFGTCTITAPPDSHTCPPGWFMLFVLDGPTPSVASFVRI 903
BLAST of rna-TanjilR_05888 vs. DB:Swiss
Match: GLOX_PHACH (Aldehyde oxidase GLOX OS=Phanerochaete chrysosporium OX=5306 GN=GLX PE=1 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 1.358e-30 Identity = 122/447 (27.29%), Postives = 192/447 (42.95%), Query Frame = 3
Query: 1401 YGTQQILANGEFIMIGGRRAF----------SYEFIPKEGQKSTKAYFFPFLYETSDLDENNLYPFTHLMPDENVFVFANNRSLL--LNPNTNKIVRTFPVLTGGSRNYPASGSSALLPIRLDDDKATSLETIKVVL*SIITLKFCIPVLYFLY*VIEILFLF**VEVIICGGNTPDAFITAEGQKVYLPALQDCARMVITDP--KPVWDTEVMPSRRTMGDALNLPDGQILLINGAKKGTA---------GWWDAEEPNLEPALYNPDKPKGQRFKV--LNPSGIARMYHSTSALLPSGKIWVAGSNTHNTYRDVD----KFPTETRVEAFYPPYLDPNLNNYRPQILQDSSDKNLRYKARFEIHFSVPSGGQITKNDIKITIYAPPFTTHGFSMNQRLVVLNSGNVAQAIKGIYKVGSMAPRFPGVAPPGYYILFVVHRGVPSQG 2654
Y + + +G ++IGG S+EF P + Q + F E S NL+P +PD VF+ ANN+S++ + NT I+ P G P GS+ LLP+ D IP EV++CGG+T D + + PA C+R+ +T K W E M R M + +++P+GQIL+ NGA G A G +A+ P L P+LY PD P G+R + + I RMYHST L G ++ G+N + + KFP+E R+E PP+ + RP +L + + L++ + + ++PS + +K +++ + F++H F + RLV + S A + AP V PPG ++F+ V S G
Sbjct: 157 YPSSVRIFDGSLMIIGGSHVLTPFYNVDPANSFEFFPSKEQTPRPSAFL----ERSL--PANLFPRAFALPDGTVFIVANNQSIIYDIEKNTETILPDIP--NGVRVTNPIDGSAILLPLSPPD---------------------FIP------------------EVLVCGGSTADTSLPSTSLSSQHPATSQCSRIKLTPEGIKAGWQVEHMLEARMMPELVHVPNGQILITNGAGTGFAALSAVADPVGNSNADHPVLTPSLYTPDAPLGKRISNAGMPTTTIPRMYHSTVTLTQQGNFFIGGNNPNMNFTPPGTPGIKFPSELRIETLDPPF----MFRSRPALL--TMPEKLKFGQKVTVPITIPSDLKASK--VQVALMDLGFSSHAFHSSARLVFMESSISADRKSLTFT----APPNGRVFPPGPAVVFLTIDDVTSPG 544
BLAST of rna-TanjilR_05888 vs. DB:Swiss
Match: GAOA_GIBZE (Galactose oxidase OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) OX=229533 GN=GAOA PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.283e-10 Identity = 69/238 (28.99%), Postives = 105/238 (44.12%), Query Frame = 3
Query: 1965 TDPKPVWDTEVMPSRRTMGDALNLPDGQILLINGAKKGTAGWWDAEEPNLEPALYNPDKPKGQRFKVLNPSGIARMYHSTSALLPSGKIWVAGSNTHNTYRDVDKFPTETRVEAFYPPYLDPNLNNY--RPQILQDSSDKNLRYKARFEIHFSVPSGGQIT-KNDIKIT---IYAPPFTTHGFSMNQR---LVVLNSGNVAQAIKGIYKVGSMAPRFPGVAPPGYYILFVVHR-GVPS 2648
T P V+ + + RT ++ LPDG + G ++G ++ P P +Y P++ F NP+ I R+YHS S LLP G+++ G D + F P YL + N RP+I + S+ SV GG+IT D IT + TH + +QR L + N+G + + + P GVA PGY++LFV++ GVPS
Sbjct: 465 TSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIP--FEDSTPVFTPEIYVPEQ---DTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCG-----DCTTNHFDAQIFTPNYLYNSNGNLATRPKITRTSTQ-------------SVKVGGRITISTDSSITKASLIRYGTATHTVNTDQRRIPLTLTNNGGNSYSFQ--------VPSDSGVALPGYWMLFVMNSAGVPS 671
BLAST of rna-TanjilR_05888 vs. DB:Swiss
Match: GAOA_GIBZA (Galactose oxidase OS=Gibberella zeae OX=5518 GN=GAOA PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 3.162e-10 Identity = 67/238 (28.15%), Postives = 105/238 (44.12%), Query Frame = 3
Query: 1965 TDPKPVWDTEVMPSRRTMGDALNLPDGQILLINGAKKGTAGWWDAEEPNLEPALYNPDKPKGQRFKVLNPSGIARMYHSTSALLPSGKIWVAGSNTHNTYRDVDKFPTETRVEAFYPPYLDPNLNNY--RPQILQDSSDKNLRYKARFEIHFSVPSGGQIT----KNDIKITIYAPPFTTHGFSMNQR---LVVLNSGNVAQAIKGIYKVGSMAPRFPGVAPPGYYILFVVHR-GVPS 2648
T P V+ + + RT ++ LPDG + G ++G ++ P P +Y P++ F NP+ I R+YHS S LLP G+++ G D + F P YL + N RP+I + S+ SV GG+IT + K ++ TH + +QR L + N+G + + + P GVA PGY++LFV++ GVPS
Sbjct: 465 TSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIP--FEDSTPVFTPEIYVPEQ---DTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCG-----DCTTNHFDAQIFTPNYLYNSNGNLATRPKITRTSTQ-------------SVKVGGRITISTDSSISKASLIRYGTATHTVNTDQRRIPLTLTNNGGNSYSFQ--------VPSDSGVALPGYWMLFVMNSAGVPS 671 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_05888 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 6
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_05888_La_Tanjil_v1.0 ID=rna-TanjilR_05888_La_Tanjil_v1.0; Name=rna-TanjilR_05888; organism=Lupinus angustifolius; type=mRNA; length=3032bpback to top protein sequence of rna-TanjilR_05888_La_Tanjil_v1.0 >rna-TanjilR_05888_La_Tanjil_v1.0 ID=rna-TanjilR_05888_La_Tanjil_v1.0; Name=rna-TanjilR_05888_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=607bpback to top mRNA from alignment at Chr_LG06-CM007366.1:32611530..32614561+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_05888_La_Tanjil_v1.0 ID=rna-TanjilR_05888_La_Tanjil_v1.0; Name=rna-TanjilR_05888; organism=Lupinus angustifolius; type=mRNA; length=3032bp; location=Sequence derived from: Chr_LG06-CM007366.1:32611530..32614561+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG06-CM007366.1:32611530..32614561+ >rna-TanjilR_05888_La_Tanjil_v1.0 ID=rna-TanjilR_05888_La_Tanjil_v1.0; Name=rna-TanjilR_05888; organism=Lupinus angustifolius; type=CDS; length=1824bp; location=Sequence derived from: Chr_LG06-CM007366.1:32611530..32614561+ (Lupinus angustifoliusback to top |