rna-TanjilR_16388

Transcript Overview
Namerna-TanjilR_16388
Unique Namerna-TanjilR_16388_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length3265
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG07-CM007367.1supercontigChr_LG07-CM007367.1:263918..267182 +Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL240Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR607Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR1241Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR1242Cicer arietinum ICC 4958 genome v2Cicer arietinum
anccR1348Cajanus cajan Asha genome v1.0Cajanus cajan
ancaR1067Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR1075Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancrR1265Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0904Pisum sativum Cameor genome v1aPisum sativum
anpvR1202Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR1043Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR1143Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR1027Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR1033Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anvfhR1085Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR1078Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR1105Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvrvR1000Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR0991Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR1159Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR0973Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0981Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR1129Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR1032Cicer arietinum
ancarR1033Cicer arietinum
anccaR1030Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR1190Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR1119Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvstR1180Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR1193Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvunR1001Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR1242Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
Ca_17236.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Vigst.06G214300.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vfaba.Tiffany.R1.6g051000.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Psat07G0388600-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
PvulFLAVERTChr11.138Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
rna-XM_004505584.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Phvul.011G022800.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vigun11g202200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
rna-KK1_021657Cajanus cajan Asha genome v1.0Cajanus cajan
Psat7g172280.1Pisum sativum Cameor genome v1aPisum sativum
Vigun11g202200.2Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vigan.06G248500.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
evm.model.Chr11.1842Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
LR48_mrnaVigan08g195700Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vum_06G01782.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Cr_16501.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Vfaba.Hedin2.R1.6g061880.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
jg8254.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Va08G070530.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Cc_v2.0_08845.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
rna-XM_014639135.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Ca_11156Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
XM_058874343.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-TanjilR_17432Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_16388gene-TanjilG_16388_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_16388rna-TanjilR_16388_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_16388_La_Tanjil_v1.0rna-TanjilR_16388_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_16388_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:263918..264896rna-TanjilR_16388_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:263918..264896Lupinus angustifoliusexon
rna-TanjilR_16388_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:266908..267182rna-TanjilR_16388_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:266908..267182Lupinus angustifoliusexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_16388_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:263918..264896rna-TanjilR_16388_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:263918..264896Lupinus angustifoliusCDS
rna-TanjilR_16388_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:266908..267182rna-TanjilR_16388_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:266908..267182Lupinus angustifoliusCDS


Homology
[Close]
BLAST of rna-TanjilR_16388 vs. DB:Swiss
Match: TRO_ARATH (Protein TRAUCO OS=Arabidopsis thaliana OX=3702 GN=TRO PE=1 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 4.209e-93
Identity = 141/174 (81.03%), Postives = 157/174 (90.23%), Query Frame = 1 
Query:  460 TEDTVLITPVQRFPDKSDDIPEMKICLSKVFKAEKVELSEDRMSAGSTKGYRMVRATRGVVEGAWYFEIKVLKLGETGHTRLGWSTEKGDLQAPVGFDGNSFGYRDIDGSKIHKALREGYGEAGYKEGDVIGFYINLPDGDKHAPKEPHLVWYKGQRYVHAQDAKEDPAKLVPG 981
             ED VLITPV RFPDK DD P+++ICLSKV+KAEKVE+SEDR++AGS+KGYRMVRATRGVVEGAWYFEIKVL LGETGHTRLGWST+KGDLQAPVG+DGNSFG+RDIDG KIHKALRE Y E GYKEGDVIGFYINLPDG+  APK PH V+YKGQRY+ A DAKE+P K+VPG
Sbjct:  249 VEDKVLITPVPRFPDKGDDTPDLEICLSKVYKAEKVEISEDRLTAGSSKGYRMVRATRGVVEGAWYFEIKVLSLGETGHTRLGWSTDKGDLQAPVGYDGNSFGFRDIDGCKIHKALRETYAEEGYKEGDVIGFYINLPDGESFAPKPPHYVFYKGQRYICAPDAKEEPPKVVPG 422

HSP 2 Score: 103.219 bits (256), Expect = 2.145e-21
Identity = 63/88 (71.59%), Postives = 69/88 (78.41%), Query Frame = 2 
Query: 2990 GSEISFFKNGVCQGVAFKDLYGGRYYPAASMYTLPNEPNCTVKXXXXXXXXXXXXXXXDRPIPKPMIEVSYHGFDNRVENGESTDKKS 3253
            GSEISFFKNGVCQG AF D+ GGRYYPAASMYTLP++ NC VKFNFGP FEFFP DF  R  P+PM EV YHGF+ R+E   S D KS
Sbjct:  422 GSEISFFKNGVCQGAAFTDIVGGRYYPAASMYTLPDQSNCLVKFNFGPSFEFFPEDFGGRATPRPMWEVPYHGFNGRLETNGSEDMKS 509
[Close]
BLAST of rna-TanjilR_16388 vs. DB:Swiss
Match: ASH2L_MOUSE (Set1/Ash2 histone methyltransferase complex subunit ASH2 OS=Mus musculus OX=10090 GN=Ash2l PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.908e-24
Identity = 58/146 (39.73%), Postives = 91/146 (62.33%), Query Frame = 1 
Query:  529 KICLSKVFKAEKVELSEDRMSAGSTKGYRMVRATRGVVEGAWYFEIKVLKLGETGHTRLGWSTEKGDLQAPVGFDGNSFGYRDIDGSKIHKALREGYGEAGYKEGDVIGFYINLPDGDKHAPKEPH------LVWYKGQRYVHAQD 948
            ++ L+   +A ++++S+DR++    KGY MVRA+ GV +GAWYFEI V ++      RLGWS   G+LQAP+G+D  S+ +R   G+K H+++ + Y  +GY +GDV+GFYINLP+  + A   P       L+ +K   Y   +D
Sbjct:  375 RVLLALHDRAPQLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLGYDKFSYSWRSKKGTKFHQSIGKHY-SSGYGQGDVLGFYINLPEDTETAKSLPDTYKDKALIKFKSYLYFEEKD 519
[Close]
BLAST of rna-TanjilR_16388 vs. DB:Swiss
Match: ASH2L_HUMAN (Set1/Ash2 histone methyltransferase complex subunit ASH2 OS=Homo sapiens OX=9606 GN=ASH2L PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 6.656e-24
Identity = 58/146 (39.73%), Postives = 91/146 (62.33%), Query Frame = 1 
Query:  529 KICLSKVFKAEKVELSEDRMSAGSTKGYRMVRATRGVVEGAWYFEIKVLKLGETGHTRLGWSTEKGDLQAPVGFDGNSFGYRDIDGSKIHKALREGYGEAGYKEGDVIGFYINLPDGDKHAPKEPH------LVWYKGQRYVHAQD 948
            ++ L+   +A ++++S+DR++    KGY MVRA+ GV +GAWYFEI V ++      RLGWS   G+LQAP+G+D  S+ +R   G+K H+++ + Y  +GY +GDV+GFYINLP+  + A   P       L+ +K   Y   +D
Sbjct:  380 RVLLALHDRAPQLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLGYDKFSYSWRSKKGTKFHQSIGKHY-SSGYGQGDVLGFYINLPEDTETAKSLPDTYKDKALIKFKSYLYFEEKD 524
[Close]
BLAST of rna-TanjilR_16388 vs. DB:Swiss
Match: ASH2_DROME (Set1/Ash2 histone methyltransferase complex subunit ASH2 OS=Drosophila melanogaster OX=7227 GN=ash2 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.424e-19
Identity = 45/108 (41.67%), Postives = 70/108 (64.81%), Query Frame = 1 
Query:  553 KAEKVELSEDRMSAGSTKGYRMVRATRGVVEGAWYFEIKVLKLGETGHTRLGWSTEKGDLQAPVGFDGNSFGYRDIDGSKIHKALREGYGEAGYKEGDVIGFYINLPD 876
            +A ++++SEDR++    +GY MVRAT  V  G WYFE+ + ++ +   TRLGW  E G+LQAP+G+D   + +R   G+K  ++  + Y +A Y EGD +GF I LP+
Sbjct:  316 RAPQLKISEDRLAVTGERGYCMVRATHSVNRGCWYFEVTIEEMPDGAATRLGWGREYGNLQAPLGYDKFGYSWRSRKGTKFTESHGKHYSDA-YVEGDTLGFLIELPE 422
[Close]
BLAST of rna-TanjilR_16388 vs. DB:Swiss
Match: ASH2_CAEEL (Set1/Ash2 histone methyltransferase complex subunit ash-2 OS=Caenorhabditis elegans OX=6239 GN=ash-2 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.506e-17
Identity = 51/151 (33.77%), Postives = 78/151 (51.66%), Query Frame = 1 
Query:  565 VELSEDRMSAGSTKGYRMVRATRGVVEGAWYFEIKVLKLGETGHTRLGWSTEKGDLQAPVGFDGNSFGYRDIDGSKIHKALREGYGEAGYKEGDVIGFYINLP-----------DGDKHAP---KEPHLVWYKGQRYVHAQDAKEDPAKLV 975
             +LS +  S    +GY M RA+ GV +G WYFE+      +  H R+GWS     LQA VG++  S+G+R   G+K H+A  + Y   G+K+GDV+G  I+LP             +K+ P   K  +L+ +K   +   Q+   D AK +
Sbjct:  310 FQLSINGNSITGFEGYSMARASHGVSKGTWYFEVNFDDQPDDSHIRIGWSQSYASLQACVGYNKFSYGWRSKHGTKFHEAKGKKYHFGGFKQGDVLGCLIHLPVDKKLQIPANLPSEKYLPVSHKGFNLISFKANYFFEVQEESADIAKTL 460
[Close]
BLAST of rna-TanjilR_16388 vs. DB:Swiss
Match: ASH2_SCHPO (Set1 complex component ash2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ash2 PE=4 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.931e-14
Identity = 40/105 (38.10%), Postives = 61/105 (58.10%), Query Frame = 1 
Query:  565 VELSEDRMSAGSTKGYRMVRATRGVVEGAWYFEIKVLKLG--ETGHTRLGWSTEKGDLQAPVGFDGNSFGYRDIDGSKIHKALREGYGEAGYKEGDVIGFYINLP 873
            V +    + A   KG+RM R+   +  G WYFEIK+ K G  +  H R+G S  +  L APVG+D  S+G RD+ G K+H +    + ++ +  GD+IG +I+LP
Sbjct:  361 VFIDHSALCATVEKGFRMARSNVFMTSGEWYFEIKIEKGGGDDGAHVRIGVSRREAPLDAPVGYDAYSYGLRDLGGQKVHMSRPRNFMDS-FGTGDIIGLHISLP 464
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_16388 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 6
Match NameE-valueIdentityDescription
TRO_ARATH4.209e-9381.03Protein TRAUCO OS=Arabidopsis thaliana OX=3702 GN=... [more]
ASH2L_MOUSE4.908e-2439.73Set1/Ash2 histone methyltransferase complex subuni... [more]
ASH2L_HUMAN6.656e-2439.73Set1/Ash2 histone methyltransferase complex subuni... [more]
ASH2_DROME1.424e-1941.67Set1/Ash2 histone methyltransferase complex subuni... [more]
ASH2_CAEEL5.506e-1733.77Set1/Ash2 histone methyltransferase complex subuni... [more]
ASH2_SCHPO1.931e-1438.10Set1 complex component ash2 OS=Schizosaccharomyces... [more]
back to top
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003877SPRY domainSMARTSM00449SPRY_3coord: 215..376
e-value: 1.3E-27
score: 107.7
IPR003877SPRY domainPFAMPF00622SPRYcoord: 218..293
e-value: 7.0E-9
score: 35.8
NoneNo IPR availableGENE3D2.60.120.920coord: 176..390
e-value: 2.8E-58
score: 198.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..76
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 127..147
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 19..36
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 115..155
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..100
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..100
NoneNo IPR availableCDDcd12872SPRY_Ash2coord: 189..376
e-value: 1.65136E-78
score: 237.416
IPR001870B30.2/SPRY domainPROSITEPS50188B302_SPRYcoord: 158..377
score: 13.028
IPR013320Concanavalin A-like lectin/glucanase domain superfamilySUPERFAMILY49899Concanavalin A-like lectins/glucanasescoord: 178..380

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_16388_La_Tanjil_v1.0 ID=rna-TanjilR_16388_La_Tanjil_v1.0; Name=rna-TanjilR_16388; organism=Lupinus angustifolius; type=mRNA; length=3265bp
ATGGATCCCTTCCTCTCTAATTCCAACGATGCCGAAGAGGACCACCACCA
ATTTCAGCCTCCACctcccaccaccaccaccaccaccgccgAAATCTCAA
CCCAACCCCACATCGATGTCAAATCAGAGATTGATCCCTCCGACAACGAA
CCTTCTTCCGAAGAAGAGCCTAACAAATCCCCAAAACGCTCTCTCGGTAA
CGAACACGAAGAGAACCTTCCGAAGAAGCAGAAGAATCTTTCATCTCTCA
CCGTGGAGGCCGAATCTCCGTCTACACTGCCGCCCGATTCCGTTATCAAC
AATAACGGTTCCGTCAATGCTGCTATTACATTGCCGTTAGTCACGTCGAA
TTCGAATTCGAAGAAGtcgaagaagaagaacaacaacATGTGGGCGACGA
AATCGAAGAaagggaagaagaaaaagagtaaggtcaacaacaacaacaac
catcCCAAAACAGAAGACACCGTGCTGATAACACCTGTCCAGAGGTTCCC
GGACAAGAGCGACGACATACCGGAGATGAAAATCTGCTTGTCCAAGGTGT
TCAAAGCAGAGAAAGTGGAATTAAGCGAGGATCGAATGAGTGCAGGGAGC
ACCAAGGGTTATAGAATGGTCAGGGCAACAAGAGGGGTTGTGGAAGGGGC
GTGGTACTTTGAGATCAAGGTTCTGAAATTGGGTGAAACAGGTCACACTC
GTTTGGGTTGGTCCACCGAGAAGGGTGATTTGCAAGCACCGGTTGGGTTT
GATGGGAATAGTTTTGGGTATAGGGACATTGATGGGAGTAAGATACATAA
GGCTTTGAGAGAGGGGTATGGAGAGGCTGGGTACAAGGAAGGTGATGTTA
TTGGCTTCTATATCAATTTGCCCGACGGAGATAAACACGCACCAAAAGAA
CCACATTTGGTTTGGTATAAGGGCCAAAGATATGTTCATGCTCAAGATGC
TAAGGAAGATCCAGCAAAACTAGTGCCTGGTCAGTAATTTCGTTTATTTT
ACTTTTGCCCTTTTACTACTTTTGTTTACTATGTTTACTTCTTATGATTT
TACTATTCTATcttttgaactagtaaagttaattttttaataggCACATG
AACTCCCTCCATTAGAAGGTGAACAATAGGGTTGATAATTTGCTATATGC
TGATCATTGTTTAACtagttactttattttattgatgCTAGTTTGTTATT
TGAGGGCCGAGTTTATACTTCATTTTTTGAGGAGTTAGGGATGCTTGACA
ATCAATTTTGTAGCATGGGGTTGCTTGGTTGTCTAATCTAAATTCTAAAC
TTTAAAGTATGTGAACctaaatataaagtaatatCCAAAAACAGTGGTAG
GGAGTTAATTACAAACATGTATCATGATTTGCTTAACACATACAAGGGAA
GAAACAATGCAATGCTCAAATAGTGAGAAACAGATGGGGATTATTTGTCT
GGAAGCAGCCAGAACCAATGTCTGAGGTGGATGCTGTAGCCGTGACACTG
CTATGCCCGCAATTAGTAAGGGGGCACTGTCCACAAGTTCTCACTAACCT
CCGGTGTGTAATCAACATGTTGCTTACTTCAACTTGGTTGAATAAGAATC
GTAACTGTTTTACATAGTAATACTTTAAAGTATTATACTTTTGAATTTCC
TGAATGCCTTGTGTTATTTCATCCTTCAAAGGCCAAatcttaaatatatt
gattGGCCTTGCCATGAGTATGTCATTTGTATAAAGACAAATAGATGAAG
TAGAGGTGGCATACTTAGTGGCAGTGACATTGGTGCACTTGATTTCTGAT
TGCACCTTCACTAGTAATTCGCCAATAATGTTTACTCTGTTCACTTATTT
GTTTCAACCCCACCTGGCATTTTTTATCTTGATTAATATCGGTGGCCATA
AAACTGGACGAGGAAGGCAATTAACAACATTGCTCGGCTCTACTTGTCAG
AGACAGAAGACAGTAAATCTGAGGATTTTATGCTAACACATATGAACTTA
GTCCATCAGGTTTTTGTAAATAACTACATTTCATACTGTGGGATGCTAAG
GTCATATTTATCAAATCATCATATATATTGTCAATCAGAAGGCCCTTTTC
TGATTCGTTAACTTCGTTGAACCTTGGGAATATGATAACAAAATCTTAAA
TAGcataaaaacaaaatctaaCTGATattgatacaaataatatatttgaa
gtATTAATTTTAACATGTCAACTATAGAACAAGTATAACCATCTTACTTC
CAAAGTGATGGAGAGCATGTGAGTATAAATACTCTGTGACTTGTGAAGAG
ACCATTATCATGGCCATGGATGAGTAGAAGAAGCTGACGAGCCTACAGTG
TGTGAGTGTGTGTGAAGATTAGTATAGAATTTCCCCAGATGCACCAATTT
ATTGACTCTTAGGATGAAACTGTTAAAATTGGTTGAGAATGCAGAATAGT
AATTAATATGTTTGCATTATGGCTGGTGGTTAGAGTTGTTAGACAATTAG
ACTGCTAAATACAATCTGCTAAAGTGATTGTAATTTGATCCTGATTTGAT
TGTATGAACAGCCCTGCCACATCGCATCTATGTATTTGTACATATACATA
CAcacacatgtatatatatgtacacCACTCTGAATTCCTCAACTTGAATT
CAGTGATTGAAAATTGAGGGTGTTTCTCCTTGACTGCTTGGGAACCGtga
ttttaaatcaaattttgtAAGAGCCCATTGTGTTCTGTATTGTGAAAATT
TTGTGGAAACTAATAACTGTTTCCGAtgcatataatataaatatagaatt
TCCCTTGcatataatataagtgtagaatTTCCCTTGcatataatataagt
gtagaatTTCCCATGcatatattataagtgtagaatTTTCCTTGCATATT
ATATAACTGTAGATTTTCCTTTGCTGCGAAGTTGTGTATTAAATATCCAA
TTCATGAATATTCACTTGGTTTCTACTCTATTCTCTGCAGGAAGTGAGAT
atcattctttaaaaatggtgTATGCCAAGGTGTAGCTTTCAAGGATCTTT
ATGGTGGTCGTTATTACCCTGCTGCTTCAATGTATACTCTCCCTAATGAG
CCAAACTGCACAGTCAAGTTCAACTTTGGCCCTGACTTTGAATTCTTTCC
TGGGGATTTCAATGACCGGCCGATTCCCAAGCCAATGATTGAAGTTTCCT
ATCATGGTTTTGACAATCGGGTTGAAAATGGAGAGTCTACTGATAAGAAA
TCCTCCAAAGAGTGA
back to top

protein sequence of rna-TanjilR_16388_La_Tanjil_v1.0

>rna-TanjilR_16388_La_Tanjil_v1.0 ID=rna-TanjilR_16388_La_Tanjil_v1.0; Name=rna-TanjilR_16388_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=417bp
MDPFLSNSNDAEEDHHQFQPPPPTTTTTTAEISTQPHIDVKSEIDPSDNE
PSSEEEPNKSPKRSLGNEHEENLPKKQKNLSSLTVEAESPSTLPPDSVIN
NNGSVNAAITLPLVTSNSNSKKSKKKNNNMWATKSKKGKKKKSKVNNNNN
HPKTEDTVLITPVQRFPDKSDDIPEMKICLSKVFKAEKVELSEDRMSAGS
TKGYRMVRATRGVVEGAWYFEIKVLKLGETGHTRLGWSTEKGDLQAPVGF
DGNSFGYRDIDGSKIHKALREGYGEAGYKEGDVIGFYINLPDGDKHAPKE
PHLVWYKGQRYVHAQDAKEDPAKLVPGSEISFFKNGVCQGVAFKDLYGGR
YYPAASMYTLPNEPNCTVKFNFGPDFEFFPGDFNDRPIPKPMIEVSYHGF
DNRVENGESTDKKSSKE
back to top

mRNA from alignment at Chr_LG07-CM007367.1:263918..267182+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_16388_La_Tanjil_v1.0 ID=rna-TanjilR_16388_La_Tanjil_v1.0; Name=rna-TanjilR_16388; organism=Lupinus angustifolius; type=mRNA; length=3265bp; location=Sequence derived from: Chr_LG07-CM007367.1:263918..267182+ (Lupinus angustifolius
ATGGATCCCTTCCTCTCTAATTCCAACGATGCCGAAGAGGACCACCACCA
ATTTCAGCCTCCACctcccaccaccaccaccaccaccgccgAAATCTCAA
CCCAACCCCACATCGATGTCAAATCAGAGATTGATCCCTCCGACAACGAA
CCTTCTTCCGAAGAAGAGCCTAACAAATCCCCAAAACGCTCTCTCGGTAA
CGAACACGAAGAGAACCTTCCGAAGAAGCAGAAGAATCTTTCATCTCTCA
CCGTGGAGGCCGAATCTCCGTCTACACTGCCGCCCGATTCCGTTATCAAC
AATAACGGTTCCGTCAATGCTGCTATTACATTGCCGTTAGTCACGTCGAA
TTCGAATTCGAAGAAGtcgaagaagaagaacaacaacATGTGGGCGACGA
AATCGAAGAaagggaagaagaaaaagagtaaggtcaacaacaacaacaac
catcCCAAAACAGAAGACACCGTGCTGATAACACCTGTCCAGAGGTTCCC
GGACAAGAGCGACGACATACCGGAGATGAAAATCTGCTTGTCCAAGGTGT
TCAAAGCAGAGAAAGTGGAATTAAGCGAGGATCGAATGAGTGCAGGGAGC
ACCAAGGGTTATAGAATGGTCAGGGCAACAAGAGGGGTTGTGGAAGGGGC
GTGGTACTTTGAGATCAAGGTTCTGAAATTGGGTGAAACAGGTCACACTC
GTTTGGGTTGGTCCACCGAGAAGGGTGATTTGCAAGCACCGGTTGGGTTT
GATGGGAATAGTTTTGGGTATAGGGACATTGATGGGAGTAAGATACATAA
GGCTTTGAGAGAGGGGTATGGAGAGGCTGGGTACAAGGAAGGTGATGTTA
TTGGCTTCTATATCAATTTGCCCGACGGAGATAAACACGCACCAAAAGAA
CCACATTTGGTTTGGTATAAGGGCCAAAGATATGTTCATGCTCAAGATGC
TAAGGAAGATCCAGCAAAACTAGTGCCTGGTCAGTAATTTCGTTTATTTT
ACTTTTGCCCTTTTACTACTTTTGTTTACTATGTTTACTTCTTATGATTT
TACTATTCTATcttttgaactagtaaagttaattttttaataggCACATG
AACTCCCTCCATTAGAAGGTGAACAATAGGGTTGATAATTTGCTATATGC
TGATCATTGTTTAACtagttactttattttattgatgCTAGTTTGTTATT
TGAGGGCCGAGTTTATACTTCATTTTTTGAGGAGTTAGGGATGCTTGACA
ATCAATTTTGTAGCATGGGGTTGCTTGGTTGTCTAATCTAAATTCTAAAC
TTTAAAGTATGTGAACctaaatataaagtaatatCCAAAAACAGTGGTAG
GGAGTTAATTACAAACATGTATCATGATTTGCTTAACACATACAAGGGAA
GAAACAATGCAATGCTCAAATAGTGAGAAACAGATGGGGATTATTTGTCT
GGAAGCAGCCAGAACCAATGTCTGAGGTGGATGCTGTAGCCGTGACACTG
CTATGCCCGCAATTAGTAAGGGGGCACTGTCCACAAGTTCTCACTAACCT
CCGGTGTGTAATCAACATGTTGCTTACTTCAACTTGGTTGAATAAGAATC
GTAACTGTTTTACATAGTAATACTTTAAAGTATTATACTTTTGAATTTCC
TGAATGCCTTGTGTTATTTCATCCTTCAAAGGCCAAatcttaaatatatt
gattGGCCTTGCCATGAGTATGTCATTTGTATAAAGACAAATAGATGAAG
TAGAGGTGGCATACTTAGTGGCAGTGACATTGGTGCACTTGATTTCTGAT
TGCACCTTCACTAGTAATTCGCCAATAATGTTTACTCTGTTCACTTATTT
GTTTCAACCCCACCTGGCATTTTTTATCTTGATTAATATCGGTGGCCATA
AAACTGGACGAGGAAGGCAATTAACAACATTGCTCGGCTCTACTTGTCAG
AGACAGAAGACAGTAAATCTGAGGATTTTATGCTAACACATATGAACTTA
GTCCATCAGGTTTTTGTAAATAACTACATTTCATACTGTGGGATGCTAAG
GTCATATTTATCAAATCATCATATATATTGTCAATCAGAAGGCCCTTTTC
TGATTCGTTAACTTCGTTGAACCTTGGGAATATGATAACAAAATCTTAAA
TAGcataaaaacaaaatctaaCTGATattgatacaaataatatatttgaa
gtATTAATTTTAACATGTCAACTATAGAACAAGTATAACCATCTTACTTC
CAAAGTGATGGAGAGCATGTGAGTATAAATACTCTGTGACTTGTGAAGAG
ACCATTATCATGGCCATGGATGAGTAGAAGAAGCTGACGAGCCTACAGTG
TGTGAGTGTGTGTGAAGATTAGTATAGAATTTCCCCAGATGCACCAATTT
ATTGACTCTTAGGATGAAACTGTTAAAATTGGTTGAGAATGCAGAATAGT
AATTAATATGTTTGCATTATGGCTGGTGGTTAGAGTTGTTAGACAATTAG
ACTGCTAAATACAATCTGCTAAAGTGATTGTAATTTGATCCTGATTTGAT
TGTATGAACAGCCCTGCCACATCGCATCTATGTATTTGTACATATACATA
CAcacacatgtatatatatgtacacCACTCTGAATTCCTCAACTTGAATT
CAGTGATTGAAAATTGAGGGTGTTTCTCCTTGACTGCTTGGGAACCGtga
ttttaaatcaaattttgtAAGAGCCCATTGTGTTCTGTATTGTGAAAATT
TTGTGGAAACTAATAACTGTTTCCGAtgcatataatataaatatagaatt
TCCCTTGcatataatataagtgtagaatTTCCCTTGcatataatataagt
gtagaatTTCCCATGcatatattataagtgtagaatTTTCCTTGCATATT
ATATAACTGTAGATTTTCCTTTGCTGCGAAGTTGTGTATTAAATATCCAA
TTCATGAATATTCACTTGGTTTCTACTCTATTCTCTGCAGGAAGTGAGAT
atcattctttaaaaatggtgTATGCCAAGGTGTAGCTTTCAAGGATCTTT
ATGGTGGTCGTTATTACCCTGCTGCTTCAATGTATACTCTCCCTAATGAG
CCAAACTGCACAGTCAAGTTCAACTTTGGCCCTGACTTTGAATTCTTTCC
TGGGGATTTCAATGACCGGCCGATTCCCAAGCCAATGATTGAAGTTTCCT
ATCATGGTTTTGACAATCGGGTTGAAAATGGAGAGTCTACTGATAAGAAA
TCCTCCAAAGAGTGA
back to top

Coding sequence (CDS) from alignment at Chr_LG07-CM007367.1:263918..267182+

>rna-TanjilR_16388_La_Tanjil_v1.0 ID=rna-TanjilR_16388_La_Tanjil_v1.0; Name=rna-TanjilR_16388; organism=Lupinus angustifolius; type=CDS; length=1254bp; location=Sequence derived from: Chr_LG07-CM007367.1:263918..267182+ (Lupinus angustifolius
ATGGATCCCTTCCTCTCTAATTCCAACGATGCCGAAGAGGACCACCACCA
ATTTCAGCCTCCACctcccaccaccaccaccaccaccgccgAAATCTCAA
CCCAACCCCACATCGATGTCAAATCAGAGATTGATCCCTCCGACAACGAA
CCTTCTTCCGAAGAAGAGCCTAACAAATCCCCAAAACGCTCTCTCGGTAA
CGAACACGAAGAGAACCTTCCGAAGAAGCAGAAGAATCTTTCATCTCTCA
CCGTGGAGGCCGAATCTCCGTCTACACTGCCGCCCGATTCCGTTATCAAC
AATAACGGTTCCGTCAATGCTGCTATTACATTGCCGTTAGTCACGTCGAA
TTCGAATTCGAAGAAGtcgaagaagaagaacaacaacATGTGGGCGACGA
AATCGAAGAaagggaagaagaaaaagagtaaggtcaacaacaacaacaac
catcCCAAAACAGAAGACACCGTGCTGATAACACCTGTCCAGAGGTTCCC
GGACAAGAGCGACGACATACCGGAGATGAAAATCTGCTTGTCCAAGGTGT
TCAAAGCAGAGAAAGTGGAATTAAGCGAGGATCGAATGAGTGCAGGGAGC
ACCAAGGGTTATAGAATGGTCAGGGCAACAAGAGGGGTTGTGGAAGGGGC
GTGGTACTTTGAGATCAAGGTTCTGAAATTGGGTGAAACAGGTCACACTC
GTTTGGGTTGGTCCACCGAGAAGGGTGATTTGCAAGCACCGGTTGGGTTT
GATGGGAATAGTTTTGGGTATAGGGACATTGATGGGAGTAAGATACATAA
GGCTTTGAGAGAGGGGTATGGAGAGGCTGGGTACAAGGAAGGTGATGTTA
TTGGCTTCTATATCAATTTGCCCGACGGAGATAAACACGCACCAAAAGAA
CCACATTTGGTTTGGTATAAGGGCCAAAGATATGTTCATGCTCAAGATGC
TAAGGAAGATCCAGCAAAACTAGTGCCTGGAAGTGAGATatcattcttta
aaaatggtgTATGCCAAGGTGTAGCTTTCAAGGATCTTTATGGTGGTCGT
TATTACCCTGCTGCTTCAATGTATACTCTCCCTAATGAGCCAAACTGCAC
AGTCAAGTTCAACTTTGGCCCTGACTTTGAATTCTTTCCTGGGGATTTCA
ATGACCGGCCGATTCCCAAGCCAATGATTGAAGTTTCCTATCATGGTTTT
GACAATCGGGTTGAAAATGGAGAGTCTACTGATAAGAAATCCTCCAAAGA
GTGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR003877SPRY_dom
IPR001870B30.2/SPRY
IPR013320ConA-like_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding