rna-TanjilR_30775
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_30775 vs. DB:Swiss
Match: LSH3_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LSH3 PE=1 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 5.005e-42 Identity = 86/98 (87.76%), Postives = 93/98 (94.90%), Query Frame = 1 Query: 634 YIRYLDQFGKTKVHTQLXXXXXXXXXXXXXXXXXRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRESQAKARGISYEKKKRKRPLP 927
++RYLDQFGKTKVHT +C F+G PNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPE NPFGARAVRLYLREVR+ Q+KARG+SYEKKKRKRPLP
Sbjct: 90 FLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRPLP 187 HSP 2 Score: 89.7373 bits (221), Expect = 7.974e-20 Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 1 Query: 115 RYENQKRRDWNTFGQYLRNHRPPLSLSICSGAHVLEFLRY 234
RYENQKRRDWNTFGQYLRNHRPPLSLS CSGAHVLEFLRY
Sbjct: 54 RYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRY 93
BLAST of rna-TanjilR_30775 vs. DB:Swiss
Match: G1L3_ORYSJ (Protein G1-like3 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L3 PE=1 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 1.096e-37 Identity = 83/98 (84.69%), Postives = 91/98 (92.86%), Query Frame = 1 Query: 634 YIRYLDQFGKTKVHTQLXXXXXXXXXXXXXXXXXRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRESQAKARGISYEKKKRKRPLP 927
++RYLDQFGKTKVHT CPFFG PNPPAPCPCPLRQAWGSLDAL+GRLRAAFEENGG+PE+NPF RAVRLYLREVRE QA+ARG+SYEKKKRK+P P
Sbjct: 109 FLRYLDQFGKTKVHTAACPFFGHPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGRPESNPFAVRAVRLYLREVREHQARARGVSYEKKKRKKPQP 206 HSP 2 Score: 83.9593 bits (206), Expect = 1.512e-17 Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 1 Query: 115 RYENQKRRDWNTFGQYLRNHRPPLSLSICSGAHVLEFLRY 234
RYE QKRRDWNTFGQYLRNHRPPL L+ CSGAHVLEFLRY
Sbjct: 73 RYEAQKRRDWNTFGQYLRNHRPPLGLAQCSGAHVLEFLRY 112
BLAST of rna-TanjilR_30775 vs. DB:Swiss
Match: G1L3_ORYSI (Protein G1-like3 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_05696 PE=3 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 1.096e-37 Identity = 83/98 (84.69%), Postives = 91/98 (92.86%), Query Frame = 1 Query: 634 YIRYLDQFGKTKVHTQLXXXXXXXXXXXXXXXXXRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRESQAKARGISYEKKKRKRPLP 927
++RYLDQFGKTKVHT CPFFG PNPPAPCPCPLRQAWGSLDAL+GRLRAAFEENGG+PE+NPF RAVRLYLREVRE QA+ARG+SYEKKKRK+P P
Sbjct: 109 FLRYLDQFGKTKVHTAACPFFGHPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGRPESNPFAVRAVRLYLREVREHQARARGVSYEKKKRKKPQP 206 HSP 2 Score: 83.9593 bits (206), Expect = 1.512e-17 Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 1 Query: 115 RYENQKRRDWNTFGQYLRNHRPPLSLSICSGAHVLEFLRY 234
RYE QKRRDWNTFGQYLRNHRPPL L+ CSGAHVLEFLRY
Sbjct: 73 RYEAQKRRDWNTFGQYLRNHRPPLGLAQCSGAHVLEFLRY 112
BLAST of rna-TanjilR_30775 vs. DB:Swiss
Match: G1L6_ORYSJ (Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 1.107e-37 Identity = 82/96 (85.42%), Postives = 92/96 (95.83%), Query Frame = 1 Query: 634 YIRYLDQFGKTKVHTQLXXXXXXXXXXXXXXXXXRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRESQAKARGISYEKKKRKRP 921
+++Y+DQFGKTKVHT +CPF+G PNPPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PE NPFGARAVRLYLREVRE+QA+ARGISYEKKKRK+P
Sbjct: 116 FLKYMDQFGKTKVHTPVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYLREVRETQARARGISYEKKKRKKP 211 HSP 2 Score: 86.6557 bits (213), Expect = 1.927e-18 Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 1 Query: 115 RYENQKRRDWNTFGQYLRNHRPPLSLSICSGAHVLEFLRY 234
RYE+QKRRDWNTFGQYLRNHRPPLSLS CSGAHVLEFL+Y
Sbjct: 80 RYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKY 119
BLAST of rna-TanjilR_30775 vs. DB:Swiss
Match: G1L6_ORYSI (Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 1.107e-37 Identity = 82/96 (85.42%), Postives = 92/96 (95.83%), Query Frame = 1 Query: 634 YIRYLDQFGKTKVHTQLXXXXXXXXXXXXXXXXXRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRESQAKARGISYEKKKRKRP 921
+++Y+DQFGKTKVHT +CPF+G PNPPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PE NPFGARAVRLYLREVRE+QA+ARGISYEKKKRK+P
Sbjct: 116 FLKYMDQFGKTKVHTPVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRLYLREVRETQARARGISYEKKKRKKP 211 HSP 2 Score: 86.6557 bits (213), Expect = 1.927e-18 Identity = 37/40 (92.50%), Postives = 39/40 (97.50%), Query Frame = 1 Query: 115 RYENQKRRDWNTFGQYLRNHRPPLSLSICSGAHVLEFLRY 234
RYE+QKRRDWNTFGQYLRNHRPPLSLS CSGAHVLEFL+Y
Sbjct: 80 RYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKY 119
BLAST of rna-TanjilR_30775 vs. DB:Swiss
Match: LSH6_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana OX=3702 GN=LSH6 PE=1 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 1.562e-37 Identity = 76/96 (79.17%), Postives = 87/96 (90.62%), Query Frame = 1 Query: 634 YIRYLDQFGKTKVHTQLXXXXXXXXXXXXXXXXXRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRESQAKARGISYEKKKRKRP 921
+++YLDQFGKTKVH CP+FG PP+PC CPL+QAWGSLDALIGRLRAA+EENGG+P++NPF ARAVR+YLREVRESQAKARGI YEKKKRKRP
Sbjct: 67 FLKYLDQFGKTKVHVAACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRESQAKARGIPYEKKKRKRP 162 HSP 2 Score: 79.337 bits (194), Expect = 3.364e-16 Identity = 32/40 (80.00%), Postives = 38/40 (95.00%), Query Frame = 1 Query: 115 RYENQKRRDWNTFGQYLRNHRPPLSLSICSGAHVLEFLRY 234
RYE+QKRRDWNTF QYL+NH+PPL+LS CSGAHV+EFL+Y
Sbjct: 31 RYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKY 70
BLAST of rna-TanjilR_30775 vs. DB:Swiss
Match: LSH4_ARATH (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 9.643e-37 Identity = 81/89 (91.01%), Postives = 84/89 (94.38%), Query Frame = 1 Query: 634 YIRYLDQFGKTKVHTQLXXXXXXXXXXXXXXXXXRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRESQAKARGISYE 900
++RYLDQFGKTKVHT LCPFFG PNPPAPC CPLRQAWGSLDALIGRLRAAFEENGG PE NPFGARAVRLYLREVR+SQAKARGISYE
Sbjct: 84 FLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYE 172 HSP 2 Score: 88.9669 bits (219), Expect = 9.284e-20 Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 1 Query: 115 RYENQKRRDWNTFGQYLRNHRPPLSLSICSGAHVLEFLRY 234
RYENQKRRDWNTFGQYLRNHRPPLSLS CSGAHVLEFLRY
Sbjct: 48 RYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRY 87
BLAST of rna-TanjilR_30775 vs. DB:Swiss
Match: G1L2_ORYSJ (Protein G1-like2 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L2 PE=1 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 9.000e-36 Identity = 82/95 (86.32%), Postives = 91/95 (95.79%), Query Frame = 1 Query: 634 YIRYLDQFGKTKVHTQLXXXXXXXXXXXXXXXXXRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRESQAKARGISYEKKKRKR 918
++RYLDQFGKTKVH CPFFG P+PPAPCPCPLRQAWGSLDAL+GRLRAAFEE+GG+PEANPFGARAVRLYLREVR+SQAKARGI+YEKK+RKR
Sbjct: 58 FLRYLDQFGKTKVHAAGCPFFGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEEHGGRPEANPFGARAVRLYLREVRDSQAKARGIAYEKKRRKR 152 HSP 2 Score: 82.8037 bits (203), Expect = 8.146e-17 Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 1 Query: 115 RYENQKRRDWNTFGQYLRNHRPPLSLSICSGAHVLEFLRY 234
RYE+QKRRDW+TFGQYLRNHRPPL LS CSGAHVLEFLRY
Sbjct: 22 RYESQKRRDWHTFGQYLRNHRPPLELSRCSGAHVLEFLRY 61
BLAST of rna-TanjilR_30775 vs. DB:Swiss
Match: G1L2_ORYSI (Protein G1-like2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_24078 PE=3 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 9.000e-36 Identity = 82/95 (86.32%), Postives = 91/95 (95.79%), Query Frame = 1 Query: 634 YIRYLDQFGKTKVHTQLXXXXXXXXXXXXXXXXXRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRESQAKARGISYEKKKRKR 918
++RYLDQFGKTKVH CPFFG P+PPAPCPCPLRQAWGSLDAL+GRLRAAFEE+GG+PEANPFGARAVRLYLREVR+SQAKARGI+YEKK+RKR
Sbjct: 58 FLRYLDQFGKTKVHAAGCPFFGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEEHGGRPEANPFGARAVRLYLREVRDSQAKARGIAYEKKRRKR 152 HSP 2 Score: 82.8037 bits (203), Expect = 8.146e-17 Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 1 Query: 115 RYENQKRRDWNTFGQYLRNHRPPLSLSICSGAHVLEFLRY 234
RYE+QKRRDW+TFGQYLRNHRPPL LS CSGAHVLEFLRY
Sbjct: 22 RYESQKRRDWHTFGQYLRNHRPPLELSRCSGAHVLEFLRY 61
BLAST of rna-TanjilR_30775 vs. DB:Swiss
Match: G1L1_ORYSJ (Protein G1-like1 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L1 PE=1 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 2.857e-35 Identity = 77/95 (81.05%), Postives = 91/95 (95.79%), Query Frame = 1 Query: 634 YIRYLDQFGKTKVHTQLXXXXXXXXXXXXXXXXXRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRESQAKARGISYEKKKRKR 918
++RYLDQFGKTKVH CPFFG P+PPAPCPCPLRQAWGSLDAL+GRLRAAFEE+GG+PE+NPFGARAVRLYLR++R++Q+KARGI+YEKK+RKR
Sbjct: 59 FLRYLDQFGKTKVHAHGCPFFGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEEHGGRPESNPFGARAVRLYLRDIRDTQSKARGIAYEKKRRKR 153 HSP 2 Score: 82.8037 bits (203), Expect = 1.388e-17 Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = 1 Query: 115 RYENQKRRDWNTFGQYLRNHRPPLSLSICSGAHVLEFLRY 234
RYE+QKRRDW TFGQYLRNHRPPL LS CSGAHVLEFLRY
Sbjct: 23 RYESQKRRDWQTFGQYLRNHRPPLELSRCSGAHVLEFLRY 62 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_30775 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_30775_La_Tanjil_v1.0 ID=rna-TanjilR_30775_La_Tanjil_v1.0; Name=rna-TanjilR_30775; organism=Lupinus angustifolius; type=mRNA; length=999bpback to top protein sequence of rna-TanjilR_30775_La_Tanjil_v1.0 >rna-TanjilR_30775_La_Tanjil_v1.0 ID=rna-TanjilR_30775_La_Tanjil_v1.0; Name=rna-TanjilR_30775_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=195bpback to top mRNA from alignment at Chr_LG07-CM007367.1:13856864..13857862+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_30775_La_Tanjil_v1.0 ID=rna-TanjilR_30775_La_Tanjil_v1.0; Name=rna-TanjilR_30775; organism=Lupinus angustifolius; type=mRNA; length=999bp; location=Sequence derived from: Chr_LG07-CM007367.1:13856864..13857862+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG07-CM007367.1:13856864..13857862+ >rna-TanjilR_30775_La_Tanjil_v1.0 ID=rna-TanjilR_30775_La_Tanjil_v1.0; Name=rna-TanjilR_30775; organism=Lupinus angustifolius; type=CDS; length=588bp; location=Sequence derived from: Chr_LG07-CM007367.1:13856864..13857862+ (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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