rna-TanjilR_07693
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_07693 vs. DB:Swiss
Match: AHL20_ARATH (AT-hook motif nuclear-localized protein 20 OS=Arabidopsis thaliana OX=3702 GN=AHL20 PE=2 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 4.825e-51 Identity = 134/227 (59.03%), Postives = 163/227 (71.81%), Query Frame = 1 Query: 169 IFVTRDSPNTLRSHVLEVAGGADVAESVAQFARRRQRGVCVLSGSGSVANVTLRQPAAPGAVVALHGRFDILSXXXXXXXXXXXXXXXXXXVYXXXXXXXXXXXXXXXXXXXXXPVMLIAATFANATYEKLPLEDDDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHQLQGG----------IPDPSSL--PLYNLTSNLIPNG-GQVGHEAFAWAHGRPPY 810 IFVTRDSPN LRSHVLE++ G+DVA+++A F+RRRQRGVCVLSG+GSVANVTLRQ AAPG VV+L GRF+ILSLTGAFLPGP+PPG+TGLTVYLAG QGQVVGGSVVG L+A G VM+IAATF+NATYE+LP+E++++ GG+ Q+ GG +PD S + P YN+ +LIPNG GQ+GHE + W H RPPY Sbjct: 84 IFVTRDSPNALRSHVLEISDGSDVADTIAHFSRRRQRGVCVLSGTGSVANVTLRQAAAPGGVVSLQGRFEILSLTGAFLPGPSPPGSTGLTVYLAGVQGQVVGGSVVGPLLAIGSVMVIAATFSNATYERLPMEEEED-----------------------------GGGSRQIHGGGDSPPRIGSNLPDLSGMAGPGYNMPPHLIPNGAGQLGHEPYTWVHARPPY 281
BLAST of rna-TanjilR_07693 vs. DB:Swiss
Match: AHL24_ARATH (AT-hook motif nuclear-localized protein 24 OS=Arabidopsis thaliana OX=3702 GN=AHL24 PE=2 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 2.084e-34 Identity = 97/140 (69.29%), Postives = 122/140 (87.14%), Query Frame = 1 Query: 169 IFVTRDSPNTLRSHVLEVAGGADVAESVAQFARRRQRGVCVLSGSGSVANVTLRQPA---APGAVVALHGRFDILSXXXXXXXXXXXXXXXXXXVYXXXXXXXXXXXXXXXXXXXXXPVMLIAATFANATYEKLPLEDDD 579 I +TRDS N LR+HV+E+ G D+ ESVA FARRRQRGVCV+SG+G+V NVT+RQP +PG+VV+LHGRF+ILSL+G+FLP PAPP ATGL+VYLAGGQGQVVGGSVVG L+ AGPV+++AA+F+NA YE+LPLE+D+ Sbjct: 122 IIITRDSANALRTHVMEIGDGCDLVESVATFARRRQRGVCVMSGTGNVTNVTIRQPGSHPSPGSVVSLHGRFEILSLSGSFLPPPAPPTATGLSVYLAGGQGQVVGGSVVGPLLCAGPVVVMAASFSNAAYERLPLEEDE 261
BLAST of rna-TanjilR_07693 vs. DB:Swiss
Match: AHL22_ARATH (AT-hook motif nuclear-localized protein 22 OS=Arabidopsis thaliana OX=3702 GN=AHL22 PE=1 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 3.962e-34 Identity = 100/142 (70.42%), Postives = 123/142 (86.62%), Query Frame = 1 Query: 169 IFVTRDSPNTLRSHVLEVAGGADVAESVAQFARRRQRGVCVLSGSGSVANVTLRQPAA-PG---AVVALHGRFDILSXXXXXXXXXXXXXXXXXXVYXXXXXXXXXXXXXXXXXXXXXPVMLIAATFANATYEKLPLEDDDE 582 I +TRDS N L+SHV+EVA G DV ESV FARRRQRG+CVLSG+G+V NVT+RQPA+ PG +VV LHGRF+ILSL+G+FLP PAPP A+GLT+YLAGGQGQVVGGSVVG L+A+GPV+++AA+F NA YE+LPLE+DD+ Sbjct: 106 IIITRDSANALKSHVMEVANGCDVMESVTVFARRRQRGICVLSGNGAVTNVTIRQPASVPGGGSSVVNLHGRFEILSLSGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPLMASGPVVIMAASFGNAAYERLPLEEDDQ 247
BLAST of rna-TanjilR_07693 vs. DB:Swiss
Match: AHL26_ARATH (AT-hook motif nuclear-localized protein 26 OS=Arabidopsis thaliana OX=3702 GN=AHL26 PE=2 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 6.261e-34 Identity = 94/138 (68.12%), Postives = 121/138 (87.68%), Query Frame = 1 Query: 169 IFVTRDSPNTLRSHVLEVAGGADVAESVAQFARRRQRGVCVLSGSGSVANVTLRQPAA-PGAVVALHGRFDILSXXXXXXXXXXXXXXXXXXVYXXXXXXXXXXXXXXXXXXXXXPVMLIAATFANATYEKLPLEDDD 579 I +TRDS N LR+HV+E+ G D+ + +A FARRRQRGVCV+SG+GSV NVT+RQP + PG+VV+LHGRF+ILSL+G+FLP PAPP ATGL+VYLAGGQGQVVGGSVVG L+ +GPV+++AA+F+NA YE+LPLE+D+ Sbjct: 135 IIITRDSANALRTHVMEIGDGCDIVDCMATFARRRQRGVCVMSGTGSVTNVTIRQPGSPPGSVVSLHGRFEILSLSGSFLPPPAPPAATGLSVYLAGGQGQVVGGSVVGPLLCSGPVVVMAASFSNAAYERLPLEEDE 272
BLAST of rna-TanjilR_07693 vs. DB:Swiss
Match: AHL29_ARATH (AT-hook motif nuclear-localized protein 29 OS=Arabidopsis thaliana OX=3702 GN=AHL29 PE=1 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 9.081e-33 Identity = 94/144 (65.28%), Postives = 117/144 (81.25%), Query Frame = 1 Query: 169 IFVTRDSPNTLRSHVLEVAGGADVAESVAQFARRRQRGVCVLSGSGSVANVTLRQPA---------APGAVVALHGRFDILSXXXXXXXXXXXXXXXXXXVYXXXXXXXXXXXXXXXXXXXXXPVMLIAATFANATYEKLPLED 573 + VTRDSPN LRSHVLEV+ GAD+ ESV +ARRR RGV +LSG+G+VANV+LRQPA G VVALHGRF+ILSLTG LP PAPPG+ GL+++L+G QGQV+GG+VV LVA+GPV+L+AA+F+NAT+E+LPLED Sbjct: 89 VIVTRDSPNVLRSHVLEVSSGADIVESVTTYARRRGRGVSILSGNGTVANVSLRQPATTAAHGANGGTGGVVALHGRFEILSLTGTVLPPPAPPGSGGLSIFLSGVQGQVIGGNVVAPLVASGPVILMAASFSNATFERLPLED 232
BLAST of rna-TanjilR_07693 vs. DB:Swiss
Match: AHL19_ARATH (AT-hook motif nuclear-localized protein 19 OS=Arabidopsis thaliana OX=3702 GN=AHL19 PE=2 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 1.242e-32 Identity = 105/141 (74.47%), Postives = 123/141 (87.23%), Query Frame = 1 Query: 169 IFVTRDSPNTLRSHVLEVAGGADVAESVAQFARRRQRGVCVLSGSGSVANVTLRQPAA--------PGAVVALHGRFDILSXXXXXXXXXXXXXXXXXXVYXXXXXXXXXXXXXXXXXXXXXPVMLIAATFANATYEKLPL 567 IFVTRDSPN L+SHV+E+A G DV E++A FARRRQRG+C+LSG+G+VANVTLRQP+ AV+AL GRF+ILSLTG+FLPGPAPPG+TGLT+YLAGGQGQVVGGSVVG L+AAGPVMLIAATF+NATYE+LPL Sbjct: 97 IFVTRDSPNALKSHVMEIASGTDVIETLATFARRRQRGICILSGNGTVANVTLRQPSTAAVAAAPGGAAVLALQGRFEILSLTGSFLPGPAPPGSTGLTIYLAGGQGQVVGGSVVGPLMAAGPVMLIAATFSNATYERLPL 237
BLAST of rna-TanjilR_07693 vs. DB:Swiss
Match: AHL15_ARATH (AT-hook motif nuclear-localized protein 15 OS=Arabidopsis thaliana OX=3702 GN=AHL15 PE=2 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 6.879e-32 Identity = 107/214 (50.00%), Postives = 132/214 (61.68%), Query Frame = 1 Query: 169 IFVTRDSPNTLRSHVLEVAGGADVAESVAQFARRRQRGVCVLSGSGSVANVTLRQPAAPGAVVALHGRFDILSXXXX-XXXXXXXXXXXXXXVYXXXXXXXXXXXXXXXXXXXXXPVMLIAATFANATYEKLPLEDDDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHQLQGGIPDPSSLPLYNLTSNLIPNGGQVGHEAFAWAHGRPP 807 + VT++SPN+L+SHVLE+A GADVAES+ FARRR RGV VLSGSG V NVTLRQPAA G VV+L G+F+ILS+ GA +P A GLT+YLAG QGQVVGG V G L+A+GPV++IAATF NATYE+LP+E Q G ++ + G P P+YN+ N IPNG Q+ W G PP Sbjct: 105 VVVTKESPNSLQSHVLEIATGADVAESLNAFARRRGRGVSVLSGSGLVTNVTLRQPAASGGVVSLRGQFEILSMCGAFLPTSGSPAAAAGLTIYLAGAQGQVVGGGVAGPLIASGPVIVIAATFCNATYERLPIE----------EEQQQEQPLQLEDGKKQKEENDDNESGNNGNEGSMQP---PMYNMPPNFIPNGHQMAQHDVYWG-GPPP 304
BLAST of rna-TanjilR_07693 vs. DB:Swiss
Match: AHL23_ARATH (AT-hook motif nuclear-localized protein 23 OS=Arabidopsis thaliana OX=3702 GN=AHL23 PE=1 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 8.676e-32 Identity = 94/137 (68.61%), Postives = 117/137 (85.40%), Query Frame = 1 Query: 169 IFVTRDSPNTLRSHVLEVAGGADVAESVAQFARRRQRGVCVLSGSGSVANVTLRQPAAPGAVVALHGRFDILSXXXXXXXXXXXXXXXXXXVYXXXXXXXXXXXXXXXXXXXXXPVMLIAATFANATYEKLPLEDDD 579 + +TR+S NTLR+H+LEV G DV + VA +ARRRQRG+CVLSGSG+V NV++RQP+A GAVV L G F+ILSL+G+FLP PAPPGAT LT++LAGGQGQVVGGSVVG L AAGPV++IAA+F N YE+LPLE+D+ Sbjct: 99 VIITRESANTLRAHILEVTNGCDVFDCVATYARRRQRGICVLSGSGTVTNVSIRQPSAAGAVVTLQGTFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLEEDE 235
BLAST of rna-TanjilR_07693 vs. DB:Swiss
Match: AHL16_ARATH (AT-hook motif nuclear-localized protein 16 OS=Arabidopsis thaliana OX=3702 GN=AHL16 PE=1 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 2.508e-31 Identity = 84/137 (61.31%), Postives = 115/137 (83.94%), Query Frame = 1 Query: 169 IFVTRDSPNTLRSHVLEVAGGADVAESVAQFARRRQRGVCVLSGSGSVANVTLRQPAAPGAVVALHGRFDILSXXXXXXXXXXXXXXXXXXVYXXXXXXXXXXXXXXXXXXXXXPVMLIAATFANATYEKLPLEDDD 579 I VT DSPN+LR++ +E++ G D+ E+++ FARR+QRG+C+LS +G V NVTLRQPA+ GA+V LHGR++ILSL G+ LP PAP G TGLT+YLAG QGQVVGG VVG L+A+GPV+L+AA+F NA +++LP++DD+ Sbjct: 70 IIVTHDSPNSLRANAVEISSGCDICETLSDFARRKQRGLCILSANGCVTNVTLRQPASSGAIVTLHGRYEILSLLGSILPPPAPLGITGLTIYLAGPQGQVVGGGVVGGLIASGPVVLMAASFMNAVFDRLPMDDDE 206
BLAST of rna-TanjilR_07693 vs. DB:Swiss
Match: AHL21_ARATH (AT-hook motif nuclear-localized protein 21 OS=Arabidopsis thaliana OX=3702 GN=AHL21 PE=2 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 5.055e-31 Identity = 90/138 (65.22%), Postives = 116/138 (84.06%), Query Frame = 1 Query: 169 IFVTRDSPNTLRSHVLEVAGGADVAESVAQFARRRQRGVCVLSGSGSVANVTLRQPAAPGAVVALHGRFDILSXXXXXXXXXXXXXXXXXXVYXXXXXXXXXXXXXXXXXXXXXPVMLIAATFANATYEKLPLEDDDE 582 + VTR+S NTLR+H+LEV G DV E ++ +ARRRQRG+CVLSG+G+V NV++RQP A GAVV L G F+ILSL+G+FLP PAPPGAT LT++LAG QGQVVGG+VVG L+AAGPVM++AA+F N YE+LPL++ +E Sbjct: 95 VIVTRESANTLRAHILEVGSGCDVFECISTYARRRQRGICVLSGTGTVTNVSIRQPTAAGAVVTLRGTFEILSLSGSFLPPPAPPGATSLTIFLAGAQGQVVGGNVVGELMAAGPVMVMAASFTNVAYERLPLDEHEE 232 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_07693 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_07693_La_Tanjil_v1.0 ID=rna-TanjilR_07693_La_Tanjil_v1.0; Name=rna-TanjilR_07693; organism=Lupinus angustifolius; type=mRNA; length=813bpback to top protein sequence of rna-TanjilR_07693_La_Tanjil_v1.0 >rna-TanjilR_07693_La_Tanjil_v1.0 ID=rna-TanjilR_07693_La_Tanjil_v1.0; Name=rna-TanjilR_07693_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=270bpback to top mRNA from alignment at Chr_LG07-CM007367.1:14032749..14033561+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_07693_La_Tanjil_v1.0 ID=rna-TanjilR_07693_La_Tanjil_v1.0; Name=rna-TanjilR_07693; organism=Lupinus angustifolius; type=mRNA; length=813bp; location=Sequence derived from: Chr_LG07-CM007367.1:14032749..14033561+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG07-CM007367.1:14032749..14033561+ >rna-TanjilR_07693_La_Tanjil_v1.0 ID=rna-TanjilR_07693_La_Tanjil_v1.0; Name=rna-TanjilR_07693; organism=Lupinus angustifolius; type=CDS; length=813bp; location=Sequence derived from: Chr_LG07-CM007367.1:14032749..14033561+ (Lupinus angustifoliusback to top |