rna-TanjilR_07712

Transcript Overview
Namerna-TanjilR_07712
Unique Namerna-TanjilR_07712_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length1553
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG07-CM007367.1supercontigChr_LG07-CM007367.1:14717601..14719153 -Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL176Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL244Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccR1311Cajanus cajan Asha genome v1.0Cajanus cajan
anccR1333Cajanus cajan Asha genome v1.0Cajanus cajan
anccR1335Cajanus cajan Asha genome v1.0Cajanus cajan
ancaR1042Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR1054Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR1057Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancrR1239Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0897Pisum sativum Cameor genome v1aPisum sativum
anpvR1196Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR1237Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR1245Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR1071Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anzwsR1014Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anvrvR1047Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR1021Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR1175Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR1201Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR0955Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0964Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR1143Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR1153Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR1009Cicer arietinum
ancarR1022Cicer arietinum
anccaR1018Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR1152Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR1154Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR1176Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR1105Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvstR1164Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR1178Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR1199Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvstR1201Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR1214Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvasR1216Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anpvfR1233Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anvunR1031Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR1272Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
XM_058868308.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
rna-KK1_002810Cajanus cajan Asha genome v1.0Cajanus cajan
jg37197.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Cr_09786.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_07712gene-TanjilG_07712_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_07712rna-TanjilR_07712_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_07712_La_Tanjil_v1.0rna-TanjilR_07712_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_07712_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:14718974..14719153rna-TanjilR_07712_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:14718974..14719153Lupinus angustifoliusCDS
rna-TanjilR_07712_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:14717601..14718113rna-TanjilR_07712_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:14717601..14718113Lupinus angustifoliusCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_07712_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:14718974..14719153rna-TanjilR_07712_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:14718974..14719153Lupinus angustifoliusexon
rna-TanjilR_07712_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:14717601..14718113rna-TanjilR_07712_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:14717601..14718113Lupinus angustifoliusexon


Homology
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_07712 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 113..144
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 157..177

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_07712_La_Tanjil_v1.0 ID=rna-TanjilR_07712_La_Tanjil_v1.0; Name=rna-TanjilR_07712; organism=Lupinus angustifolius; type=mRNA; length=1553bp
ATGATCTGTTGGCACACCAGGCTTGGTTCCCTCGGTCAGATGACTAGCAT
CAAGCCTAGTTCCCTCGGTCAGAGTCTCAACATGTGGTCCGACTTCCTTA
GCCAAATAATCTGCATCAACATCAGCACCATCTGCATCTGTATCAATGAC
TTTGGCCTGCATAAGAACACAATTAGAACCGTAAGTTGGTGCATCAGGAT
TAAGGCTTGGCGCTTCATGGCCCTTACTTGGCGCATGAGTACCAAGTTTC
TTGACTAGCAAGTTAATTTGCTTGGGGAGCAATTTAACTTGGTTGGGCAC
TTTTCCTGGATTATTCTGAATAATGTTTGATAGTAGGCTTTCACTCTCCC
ATGCCCAGTAACAATGTGTTCATTGGTGGCTAGTGGTTCCTTGGTCGTGG
ACCAGTCCAACAAAATGTATATTTAAATTTAGAGTTGAGATCTAAGGCCA
CAAACCACCTAACAGATTGTAATTAAAAGAAGAAAAAACTTCATATTTGA
TTCTCATTTCATATGGAGATTCATATTTGATTCACATTTCATATGGAGAT
TCACATTTGTTTCTTGAAGGATTTCTTTTGGCTTCATCAAAAAATCTGGG
TTTTGTATTTTCATTCTCATTTTCCTCTACTTGTAATTGTTCTTATTTTA
AAGTAAGGCATTATATAGTTGTTGCTGCTTTCTTAATTTTTATTGGTGCT
GGTTGAAAAATTGTGGAGTACCCTTTTCTTGTTATCTGATTCATCTAAGG
CTCTAACAGCTTTCCAATTAACTACTGTCTAATGTCTACTTCCCATTTAA
TTTTTGATCAGTTTATATCACATCAAATTTATTTTGCCCCATTGAGTTTT
CAGCCTTCATTGCTCTCTTGTGTGAGAGCATAATGCTCCAGAGACCAGAG
GGTTTAATTATGAATTAAGCAGCTATAACTTTTGCGGTACTCTGTCTATT
GTCTAACATTAGTTACTAAAAACTTGTAAATGTGTGTTTAACATTTTGTT
AGTGTGAAGTGTTACAACGTATTTCATTTTTTGTATGCAGATTTTCAAAT
CCTATGGTTGGACATTCCCTATCATCCTCGCATCATGGTTGCTAGCTAGT
GGCCCAAAAGCTTTCCTCATGGCATTAGCACTCCCCCTTGTTCAGTCGGC
ACTTGCACTAGCATTTGAGAAGTTATGGGGACAGACGAAGGGAAAGCCAA
AACGCAAGTACAGGATGAGGAGGAAATCTCGCTCTATGAATGGCAATGGA
GTTGTGGAAGAACCAGACGAAAACCAGAACACTAGAAAGGGGAAGACAGG
CTATCAGTCCTGGGTAGTTGAAAATAATGGTTCGGTTGATCAAGGCAGCC
AAGAAGCACCAAGTTTTGGTGGATGGGATGACTTGGAAAGACCAGCAACA
AGGTCTTCTCGAGTGATGAACGGGTTGTCACAAAGGATGCCTACGGAAGG
TGGCAGGTTTAGTAGGAGAGAAAGAAAAAGCGACAAACCTCTGCTGTTAC
GATTGCTTATCGCGATTTTTCCGTTTTTGGGTACATGGACAAAGATGCTG
TAA
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protein sequence of rna-TanjilR_07712_La_Tanjil_v1.0

>rna-TanjilR_07712_La_Tanjil_v1.0 ID=rna-TanjilR_07712_La_Tanjil_v1.0; Name=rna-TanjilR_07712_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=230bp
MICWHTRLGSLGQMTSIKPSSLGQSLNMWSDFLSQIICINISTICICIND
FGLHKNTIRTIFKSYGWTFPIILASWLLASGPKAFLMALALPLVQSALAL
AFEKLWGQTKGKPKRKYRMRRKSRSMNGNGVVEEPDENQNTRKGKTGYQS
WVVENNGSVDQGSQEAPSFGGWDDLERPATRSSRVMNGLSQRMPTEGGRF
SRRERKSDKPLLLRLLIAIFPFLGTWTKML
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mRNA from alignment at Chr_LG07-CM007367.1:14717601..14719153-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_07712_La_Tanjil_v1.0 ID=rna-TanjilR_07712_La_Tanjil_v1.0; Name=rna-TanjilR_07712; organism=Lupinus angustifolius; type=mRNA; length=1553bp; location=Sequence derived from: Chr_LG07-CM007367.1:14717601..14719153- (Lupinus angustifolius
ATGATCTGTTGGCACACCAGGCTTGGTTCCCTCGGTCAGATGACTAGCAT
CAAGCCTAGTTCCCTCGGTCAGAGTCTCAACATGTGGTCCGACTTCCTTA
GCCAAATAATCTGCATCAACATCAGCACCATCTGCATCTGTATCAATGAC
TTTGGCCTGCATAAGAACACAATTAGAACCGTAAGTTGGTGCATCAGGAT
TAAGGCTTGGCGCTTCATGGCCCTTACTTGGCGCATGAGTACCAAGTTTC
TTGACTAGCAAGTTAATTTGCTTGGGGAGCAATTTAACTTGGTTGGGCAC
TTTTCCTGGATTATTCTGAATAATGTTTGATAGTAGGCTTTCACTCTCCC
ATGCCCAGTAACAATGTGTTCATTGGTGGCTAGTGGTTCCTTGGTCGTGG
ACCAGTCCAACAAAATGTATATTTAAATTTAGAGTTGAGATCTAAGGCCA
CAAACCACCTAACAGATTGTAATTAAAAGAAGAAAAAACTTCATATTTGA
TTCTCATTTCATATGGAGATTCATATTTGATTCACATTTCATATGGAGAT
TCACATTTGTTTCTTGAAGGATTTCTTTTGGCTTCATCAAAAAATCTGGG
TTTTGTATTTTCATTCTCATTTTCCTCTACTTGTAATTGTTCTTATTTTA
AAGTAAGGCATTATATAGTTGTTGCTGCTTTCTTAATTTTTATTGGTGCT
GGTTGAAAAATTGTGGAGTACCCTTTTCTTGTTATCTGATTCATCTAAGG
CTCTAACAGCTTTCCAATTAACTACTGTCTAATGTCTACTTCCCATTTAA
TTTTTGATCAGTTTATATCACATCAAATTTATTTTGCCCCATTGAGTTTT
CAGCCTTCATTGCTCTCTTGTGTGAGAGCATAATGCTCCAGAGACCAGAG
GGTTTAATTATGAATTAAGCAGCTATAACTTTTGCGGTACTCTGTCTATT
GTCTAACATTAGTTACTAAAAACTTGTAAATGTGTGTTTAACATTTTGTT
AGTGTGAAGTGTTACAACGTATTTCATTTTTTGTATGCAGATTTTCAAAT
CCTATGGTTGGACATTCCCTATCATCCTCGCATCATGGTTGCTAGCTAGT
GGCCCAAAAGCTTTCCTCATGGCATTAGCACTCCCCCTTGTTCAGTCGGC
ACTTGCACTAGCATTTGAGAAGTTATGGGGACAGACGAAGGGAAAGCCAA
AACGCAAGTACAGGATGAGGAGGAAATCTCGCTCTATGAATGGCAATGGA
GTTGTGGAAGAACCAGACGAAAACCAGAACACTAGAAAGGGGAAGACAGG
CTATCAGTCCTGGGTAGTTGAAAATAATGGTTCGGTTGATCAAGGCAGCC
AAGAAGCACCAAGTTTTGGTGGATGGGATGACTTGGAAAGACCAGCAACA
AGGTCTTCTCGAGTGATGAACGGGTTGTCACAAAGGATGCCTACGGAAGG
TGGCAGGTTTAGTAGGAGAGAAAGAAAAAGCGACAAACCTCTGCTGTTAC
GATTGCTTATCGCGATTTTTCCGTTTTTGGGTACATGGACAAAGATGCTG
TAA
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Coding sequence (CDS) from alignment at Chr_LG07-CM007367.1:14717601..14719153-

>rna-TanjilR_07712_La_Tanjil_v1.0 ID=rna-TanjilR_07712_La_Tanjil_v1.0; Name=rna-TanjilR_07712; organism=Lupinus angustifolius; type=CDS; length=693bp; location=Sequence derived from: Chr_LG07-CM007367.1:14717601..14719153- (Lupinus angustifolius
ATGATCTGTTGGCACACCAGGCTTGGTTCCCTCGGTCAGATGACTAGCAT
CAAGCCTAGTTCCCTCGGTCAGAGTCTCAACATGTGGTCCGACTTCCTTA
GCCAAATAATCTGCATCAACATCAGCACCATCTGCATCTGTATCAATGAC
TTTGGCCTGCATAAGAACACAATTAGAACCATTTTCAAATCCTATGGTTG
GACATTCCCTATCATCCTCGCATCATGGTTGCTAGCTAGTGGCCCAAAAG
CTTTCCTCATGGCATTAGCACTCCCCCTTGTTCAGTCGGCACTTGCACTA
GCATTTGAGAAGTTATGGGGACAGACGAAGGGAAAGCCAAAACGCAAGTA
CAGGATGAGGAGGAAATCTCGCTCTATGAATGGCAATGGAGTTGTGGAAG
AACCAGACGAAAACCAGAACACTAGAAAGGGGAAGACAGGCTATCAGTCC
TGGGTAGTTGAAAATAATGGTTCGGTTGATCAAGGCAGCCAAGAAGCACC
AAGTTTTGGTGGATGGGATGACTTGGAAAGACCAGCAACAAGGTCTTCTC
GAGTGATGAACGGGTTGTCACAAAGGATGCCTACGGAAGGTGGCAGGTTT
AGTAGGAGAGAAAGAAAAAGCGACAAACCTCTGCTGTTACGATTGCTTAT
CGCGATTTTTCCGTTTTTGGGTACATGGACAAAGATGCTGTAA
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