Transcript Overview
Name | rna-TanjilR_07713 |
Unique Name | rna-TanjilR_07713_La_Tanjil_v1.0 |
Type | mRNA |
Organism | Lupinus angustifolius (blue lupin) |
Sequence length | 1094 |
Product | hypothetical protein |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_07713 | rna-TanjilR_07713_La_Tanjil_v1.0-protein | Lupinus angustifolius | polypeptide |
rna-TanjilR_07713_La_Tanjil_v1.0 | rna-TanjilR_07713_La_Tanjil_v1.0 | Lupinus angustifolius | polypeptide |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_07713_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:14728761..14729090 | rna-TanjilR_07713_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:14728761..14729090 | Lupinus angustifolius | CDS |
rna-TanjilR_07713_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:14727997..14728053 | rna-TanjilR_07713_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:14727997..14728053 | Lupinus angustifolius | CDS |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_07713_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:14728761..14729090 | rna-TanjilR_07713_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:14728761..14729090 | Lupinus angustifolius | exon |
rna-TanjilR_07713_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:14727997..14728053 | rna-TanjilR_07713_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:14727997..14728053 | Lupinus angustifolius | exon |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 67..87 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 40..97 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 40..66 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_07713_La_Tanjil_v1.0 ID=rna-TanjilR_07713_La_Tanjil_v1.0; Name=rna-TanjilR_07713; organism=Lupinus angustifolius; type=mRNA; length=1094bp ATGGAAGCATGCTCTACATTCCATCCTAAACCTCAACCTTGTCCATGGCG ACCAACCCTTTTCAACCCAAAACCCATTTCCCATTATCGCATCTCTTGCT CCAACAACAACAACAACAATATCCCACGTTGGGATTCCAATGCTGAAACC TCTTCACCCAGAAATTTCAGCTTCAACAATTTCAAAGCCAAACGTCCTCC TCAGCAAGACCAACAAGAAGAATTCGGAAAGAAGAGACGGTGGTGGTCTG ATGAAGCTGAATCTCCGTCGTTTGAGGAAGAAACTAGTGGGGGTTGGGAG GAAGTTATAGATTCTCTCTGGATTTTCAAGGTAATTTGTCTCTTTCGTTT CTGTAGTTAACTTCAAGTGTGTCAAATTTGTTTTTTTTAACTATGCCCTT TATTTTAATACAAGTCCAATGACAAGGTTTTGGTTAATAACAATAGATCA CGGGTTCAAGTAAATTGTATGAGAAGTTGGGTTCGTTTATGAGTTGAGTT TTGGATGAGAGAAATGAAAAAAAACTTTAAAATCATTTCATTTATGACTC TTCAACCTTTCATTTCTCTTTCTCCCCCTCCACAACTTAATTCGCAAAAG GACTCATACCCTACCAGACTCCACTAGGTGAGAGTAATAGACCACCTTTT TTATGATAAGGAGTTAAAATGGGATAAAGATGGGTTGAAAAACTAAATCC ATGGAAATATTAAACATGTCTTTTCCCAATACAAAGTTACTTTTGAATTC CTTATCCTAGGCCCTTAAAATTTCCCTTAGTTTAGTGTGGAAGACGAATA AACTGTTTATGGCATTTGGTTTTATTAATTTATTTATTTTGGACTTGTGG ATGTAGGTGGTAATATATTGAAAGATGAGTATTTGATTACTACGTGCCTC ACTATTTAAGATTAGTTTCTCTTCTACGTGAGGCTTCTAATGATAGTTTA AGCTTTTTTCTCTGTGTCTGACATAAAGCAAAGTGATTGTTTATAAAATT GGCAGACCAATTATTTTCAATGGAATCTTTGTTGAAGGCATCTCTTGAGC AATCAAGCAAAAGCAACGCACCTGGCCAGCATTGTCTCGGCTAA back to topprotein sequence of rna-TanjilR_07713_La_Tanjil_v1.0 >rna-TanjilR_07713_La_Tanjil_v1.0 ID=rna-TanjilR_07713_La_Tanjil_v1.0; Name=rna-TanjilR_07713_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=128bp MEACSTFHPKPQPCPWRPTLFNPKPISHYRISCSNNNNNNIPRWDSNAET SSPRNFSFNNFKAKRPPQQDQQEEFGKKRRWWSDEAESPSFEEETSGGWE EVIDSLWIFKASLEQSSKSNAPGQHCLG back to topmRNA from alignment at Chr_LG07-CM007367.1:14727997..14729090- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >rna-TanjilR_07713_La_Tanjil_v1.0 ID=rna-TanjilR_07713_La_Tanjil_v1.0; Name=rna-TanjilR_07713; organism=Lupinus angustifolius; type=mRNA; length=1094bp; location=Sequence derived from: Chr_LG07-CM007367.1:14727997..14729090- (Lupinus angustifolius ATGGAAGCATGCTCTACATTCCATCCTAAACCTCAACCTTGTCCATGGCG
ACCAACCCTTTTCAACCCAAAACCCATTTCCCATTATCGCATCTCTTGCT
CCAACAACAACAACAACAATATCCCACGTTGGGATTCCAATGCTGAAACC
TCTTCACCCAGAAATTTCAGCTTCAACAATTTCAAAGCCAAACGTCCTCC
TCAGCAAGACCAACAAGAAGAATTCGGAAAGAAGAGACGGTGGTGGTCTG
ATGAAGCTGAATCTCCGTCGTTTGAGGAAGAAACTAGTGGGGGTTGGGAG
GAAGTTATAGATTCTCTCTGGATTTTCAAGGTAATTTGTCTCTTTCGTTT
CTGTAGTTAACTTCAAGTGTGTCAAATTTGTTTTTTTTAACTATGCCCTT
TATTTTAATACAAGTCCAATGACAAGGTTTTGGTTAATAACAATAGATCA
CGGGTTCAAGTAAATTGTATGAGAAGTTGGGTTCGTTTATGAGTTGAGTT
TTGGATGAGAGAAATGAAAAAAAACTTTAAAATCATTTCATTTATGACTC
TTCAACCTTTCATTTCTCTTTCTCCCCCTCCACAACTTAATTCGCAAAAG
GACTCATACCCTACCAGACTCCACTAGGTGAGAGTAATAGACCACCTTTT
TTATGATAAGGAGTTAAAATGGGATAAAGATGGGTTGAAAAACTAAATCC
ATGGAAATATTAAACATGTCTTTTCCCAATACAAAGTTACTTTTGAATTC
CTTATCCTAGGCCCTTAAAATTTCCCTTAGTTTAGTGTGGAAGACGAATA
AACTGTTTATGGCATTTGGTTTTATTAATTTATTTATTTTGGACTTGTGG
ATGTAGGTGGTAATATATTGAAAGATGAGTATTTGATTACTACGTGCCTC
ACTATTTAAGATTAGTTTCTCTTCTACGTGAGGCTTCTAATGATAGTTTA
AGCTTTTTTCTCTGTGTCTGACATAAAGCAAAGTGATTGTTTATAAAATT
GGCAGACCAATTATTTTCAATGGAATCTTTGTTGAAGGCATCTCTTGAGC
AATCAAGCAAAAGCAACGCACCTGGCCAGCATTGTCTCGGCTAA back to topCoding sequence (CDS) from alignment at Chr_LG07-CM007367.1:14727997..14729090- >rna-TanjilR_07713_La_Tanjil_v1.0 ID=rna-TanjilR_07713_La_Tanjil_v1.0; Name=rna-TanjilR_07713; organism=Lupinus angustifolius; type=CDS; length=387bp; location=Sequence derived from: Chr_LG07-CM007367.1:14727997..14729090- (Lupinus angustifolius ATGGAAGCATGCTCTACATTCCATCCTAAACCTCAACCTTGTCCATGGCG ACCAACCCTTTTCAACCCAAAACCCATTTCCCATTATCGCATCTCTTGCT CCAACAACAACAACAACAATATCCCACGTTGGGATTCCAATGCTGAAACC TCTTCACCCAGAAATTTCAGCTTCAACAATTTCAAAGCCAAACGTCCTCC TCAGCAAGACCAACAAGAAGAATTCGGAAAGAAGAGACGGTGGTGGTCTG ATGAAGCTGAATCTCCGTCGTTTGAGGAAGAAACTAGTGGGGGTTGGGAG GAAGTTATAGATTCTCTCTGGATTTTCAAGGCATCTCTTGAGCAATCAAG CAAAAGCAACGCACCTGGCCAGCATTGTCTCGGCTAA back to top
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