rna-TanjilR_07713

Transcript Overview


Name	rna-TanjilR_07713
Unique Name	rna-TanjilR_07713_La_Tanjil_v1.0
Type	mRNA
Organism	Lupinus angustifolius (blue lupin)
Sequence length	1094
Product	hypothetical protein

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr_LG07-CM007367.1	supercontig	Chr_LG07-CM007367.1:14727997..14729090 -	Lupinus angustifolius L. Tanjil genome v1.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Lupinus angustifolius L. Tanjil genome v1.0	2019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.0	2020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot	2020-01-28

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
ananL176	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananL244	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anpvR1196	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anpvR1237	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anpvR1245	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anvuR1071	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anzwsR1014	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
anvrvR1047	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
anvuaR1021	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
ancanR0955	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
ancanR0964	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
anavjR1143	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
anavjR1153	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
ancarR1009		Cicer arietinum
ancarR1022		Cicer arietinum
anccaR1018	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anvumR1152	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvumR1154	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvumR1176	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvvaR1105	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
anvstR1164	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvasR1178	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvstR1199	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvstR1201	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvasR1214	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvasR1216	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anpvfR1233	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
anpvfR1272	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris

Orthologs


Gene/Transcript	Assembly	Species
XM_058868310.1	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-TanjilG_07713	gene-TanjilG_07713_La_Tanjil_v1.0	Lupinus angustifolius	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_07713	rna-TanjilR_07713_La_Tanjil_v1.0-protein	Lupinus angustifolius	polypeptide
rna-TanjilR_07713_La_Tanjil_v1.0	rna-TanjilR_07713_La_Tanjil_v1.0	Lupinus angustifolius	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_07713_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:14728761..14729090	rna-TanjilR_07713_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:14728761..14729090	Lupinus angustifolius	CDS
rna-TanjilR_07713_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:14727997..14728053	rna-TanjilR_07713_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:14727997..14728053	Lupinus angustifolius	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_07713_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:14728761..14729090	rna-TanjilR_07713_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:14728761..14729090	Lupinus angustifolius	exon
rna-TanjilR_07713_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:14727997..14728053	rna-TanjilR_07713_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:14727997..14728053	Lupinus angustifolius	exon

Homology

The following BLAST results are available for this feature:

BLAST of rna-TanjilR_07713 vs.

BLAST of rna-TanjilR_07713 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0

Position :

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Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..66

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Chr_LG07-CM007367.1:14727997..14729090-
coding sequence from alignment at Chr_LG07-CM007367.1:14727997..14729090-

mRNA sequence

>rna-TanjilR_07713_La_Tanjil_v1.0 ID=rna-TanjilR_07713_La_Tanjil_v1.0; Name=rna-TanjilR_07713; organism=Lupinus angustifolius; type=mRNA; length=1094bp
ATGGAAGCATGCTCTACATTCCATCCTAAACCTCAACCTTGTCCATGGCG
ACCAACCCTTTTCAACCCAAAACCCATTTCCCATTATCGCATCTCTTGCT
CCAACAACAACAACAACAATATCCCACGTTGGGATTCCAATGCTGAAACC
TCTTCACCCAGAAATTTCAGCTTCAACAATTTCAAAGCCAAACGTCCTCC
TCAGCAAGACCAACAAGAAGAATTCGGAAAGAAGAGACGGTGGTGGTCTG
ATGAAGCTGAATCTCCGTCGTTTGAGGAAGAAACTAGTGGGGGTTGGGAG
GAAGTTATAGATTCTCTCTGGATTTTCAAGGTAATTTGTCTCTTTCGTTT
CTGTAGTTAACTTCAAGTGTGTCAAATTTGTTTTTTTTAACTATGCCCTT
TATTTTAATACAAGTCCAATGACAAGGTTTTGGTTAATAACAATAGATCA
CGGGTTCAAGTAAATTGTATGAGAAGTTGGGTTCGTTTATGAGTTGAGTT
TTGGATGAGAGAAATGAAAAAAAACTTTAAAATCATTTCATTTATGACTC
TTCAACCTTTCATTTCTCTTTCTCCCCCTCCACAACTTAATTCGCAAAAG
GACTCATACCCTACCAGACTCCACTAGGTGAGAGTAATAGACCACCTTTT
TTATGATAAGGAGTTAAAATGGGATAAAGATGGGTTGAAAAACTAAATCC
ATGGAAATATTAAACATGTCTTTTCCCAATACAAAGTTACTTTTGAATTC
CTTATCCTAGGCCCTTAAAATTTCCCTTAGTTTAGTGTGGAAGACGAATA
AACTGTTTATGGCATTTGGTTTTATTAATTTATTTATTTTGGACTTGTGG
ATGTAGGTGGTAATATATTGAAAGATGAGTATTTGATTACTACGTGCCTC
ACTATTTAAGATTAGTTTCTCTTCTACGTGAGGCTTCTAATGATAGTTTA
AGCTTTTTTCTCTGTGTCTGACATAAAGCAAAGTGATTGTTTATAAAATT
GGCAGACCAATTATTTTCAATGGAATCTTTGTTGAAGGCATCTCTTGAGC
AATCAAGCAAAAGCAACGCACCTGGCCAGCATTGTCTCGGCTAA

protein sequence of rna-TanjilR_07713_La_Tanjil_v1.0

>rna-TanjilR_07713_La_Tanjil_v1.0 ID=rna-TanjilR_07713_La_Tanjil_v1.0; Name=rna-TanjilR_07713_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=128bp
MEACSTFHPKPQPCPWRPTLFNPKPISHYRISCSNNNNNNIPRWDSNAET
SSPRNFSFNNFKAKRPPQQDQQEEFGKKRRWWSDEAESPSFEEETSGGWE
EVIDSLWIFKASLEQSSKSNAPGQHCLG

mRNA from alignment at Chr_LG07-CM007367.1:14727997..14729090-

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna-TanjilR_07713_La_Tanjil_v1.0 ID=rna-TanjilR_07713_La_Tanjil_v1.0; Name=rna-TanjilR_07713; organism=Lupinus angustifolius; type=mRNA; length=1094bp; location=Sequence derived from: Chr_LG07-CM007367.1:14727997..14729090- (Lupinus angustifolius
ATGGAAGCATGCTCTACATTCCATCCTAAACCTCAACCTTGTCCATGGCG
ACCAACCCTTTTCAACCCAAAACCCATTTCCCATTATCGCATCTCTTGCT
CCAACAACAACAACAACAATATCCCACGTTGGGATTCCAATGCTGAAACC
TCTTCACCCAGAAATTTCAGCTTCAACAATTTCAAAGCCAAACGTCCTCC
TCAGCAAGACCAACAAGAAGAATTCGGAAAGAAGAGACGGTGGTGGTCTG
ATGAAGCTGAATCTCCGTCGTTTGAGGAAGAAACTAGTGGGGGTTGGGAG
GAAGTTATAGATTCTCTCTGGATTTTCAAGGTAATTTGTCTCTTTCGTTT
CTGTAGTTAACTTCAAGTGTGTCAAATTTGTTTTTTTTAACTATGCCCTT
TATTTTAATACAAGTCCAATGACAAGGTTTTGGTTAATAACAATAGATCA
CGGGTTCAAGTAAATTGTATGAGAAGTTGGGTTCGTTTATGAGTTGAGTT
TTGGATGAGAGAAATGAAAAAAAACTTTAAAATCATTTCATTTATGACTC
TTCAACCTTTCATTTCTCTTTCTCCCCCTCCACAACTTAATTCGCAAAAG
GACTCATACCCTACCAGACTCCACTAGGTGAGAGTAATAGACCACCTTTT
TTATGATAAGGAGTTAAAATGGGATAAAGATGGGTTGAAAAACTAAATCC
ATGGAAATATTAAACATGTCTTTTCCCAATACAAAGTTACTTTTGAATTC
CTTATCCTAGGCCCTTAAAATTTCCCTTAGTTTAGTGTGGAAGACGAATA
AACTGTTTATGGCATTTGGTTTTATTAATTTATTTATTTTGGACTTGTGG
ATGTAGGTGGTAATATATTGAAAGATGAGTATTTGATTACTACGTGCCTC
ACTATTTAAGATTAGTTTCTCTTCTACGTGAGGCTTCTAATGATAGTTTA
AGCTTTTTTCTCTGTGTCTGACATAAAGCAAAGTGATTGTTTATAAAATT
GGCAGACCAATTATTTTCAATGGAATCTTTGTTGAAGGCATCTCTTGAGC
AATCAAGCAAAAGCAACGCACCTGGCCAGCATTGTCTCGGCTAA

Coding sequence (CDS) from alignment at Chr_LG07-CM007367.1:14727997..14729090-

>rna-TanjilR_07713_La_Tanjil_v1.0 ID=rna-TanjilR_07713_La_Tanjil_v1.0; Name=rna-TanjilR_07713; organism=Lupinus angustifolius; type=CDS; length=387bp; location=Sequence derived from: Chr_LG07-CM007367.1:14727997..14729090- (Lupinus angustifolius
ATGGAAGCATGCTCTACATTCCATCCTAAACCTCAACCTTGTCCATGGCG
ACCAACCCTTTTCAACCCAAAACCCATTTCCCATTATCGCATCTCTTGCT
CCAACAACAACAACAACAATATCCCACGTTGGGATTCCAATGCTGAAACC
TCTTCACCCAGAAATTTCAGCTTCAACAATTTCAAAGCCAAACGTCCTCC
TCAGCAAGACCAACAAGAAGAATTCGGAAAGAAGAGACGGTGGTGGTCTG
ATGAAGCTGAATCTCCGTCGTTTGAGGAAGAAACTAGTGGGGGTTGGGAG
GAAGTTATAGATTCTCTCTGGATTTTCAAGGCATCTCTTGAGCAATCAAG
CAAAAGCAACGCACCTGGCCAGCATTGTCTCGGCTAA

Search form

rna-TanjilR_07713