rna-TanjilR_29874

Transcript Overview
Namerna-TanjilR_29874
Unique Namerna-TanjilR_29874_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length798
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG08-CM007368.1supercontigChr_LG08-CM007368.1:20899983..20900780 -Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL255Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL343Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL446Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL569Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL607Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR619Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR1272Cicer arietinum ICC 4958 genome v2Cicer arietinum
anccR1459Cajanus cajan Asha genome v1.0Cajanus cajan
ancaR1095Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR1097Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR1098Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR1150Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR1158Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancrR1280Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0925Pisum sativum Cameor genome v1aPisum sativum
anpsR0944Pisum sativum Cameor genome v1aPisum sativum
anpsR0945Pisum sativum Cameor genome v1aPisum sativum
anpvR1270Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR1271Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR1304Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR1307Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR1084Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR1087Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR1090Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR1110Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR1214Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR1215Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR1275Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR1046Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR1072Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR1081Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
antifR1098Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR1124Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR1113Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR1158Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR1145Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR1183Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvrvR1049Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR1074Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR1075Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR1039Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR1040Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR1044Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR1063Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR1222Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR1242Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR1279Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR1281Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR0998Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR1002Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR1003Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR1051Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR1199Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR1200Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR1247Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR1059Cicer arietinum
ancarR1062Cicer arietinum
ancarR1064Cicer arietinum
ancarR1114Cicer arietinum
anccaR1056Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR1080Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR1110Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR1273Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR1282Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR1283Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR1157Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR1212Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvstR1211Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvstR1263Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR1274Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR1273Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR1282Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvasR1283Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR1275Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR1284Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvunR1048Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR1050Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR1053Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR1070Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR1309Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR1310Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR1340Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR1342Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR1345Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
evm.model.Chr11.578Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigan.07G124200.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vum_07G00966.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Ca_00920.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Vigun05g198300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Cc_v2.0_10017.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vigun11g062600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Psat05G0690800-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vigun11g062600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
evm.model.Chr05.1898Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Psat5g246320.1Pisum sativum Cameor genome v1aPisum sativum
jg13509.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
jg13497.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vfaba.Hedin2.R1.1g072960.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
XM_058889847.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
XM_058923918.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
jg44485.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-XM_004487614.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vfaba.Tiffany.R1.4g013000.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Va05G037330.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Cr_00790.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
rna-KK1_022589Cajanus cajan Asha genome v1.0Cajanus cajan
Ca_06909Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vigun05g198300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Cc_v2.0_24190.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vfaba.Tiffany.R1.1g052760.1Vicia faba cv. Tiffany genome v1.0Vicia faba

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-TanjilR_26882Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_29874gene-TanjilG_29874_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_29874rna-TanjilR_29874_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_29874_La_Tanjil_v1.0rna-TanjilR_29874_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_29874_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:20899983..20900780rna-TanjilR_29874_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:20899983..20900780Lupinus angustifoliusCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_29874_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:20899983..20900780rna-TanjilR_29874_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:20899983..20900780Lupinus angustifoliusexon


Homology
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_29874 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009646Root capPFAMPF06830Root_capcoord: 175..232
e-value: 4.8E-27
score: 93.8

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_29874_La_Tanjil_v1.0 ID=rna-TanjilR_29874_La_Tanjil_v1.0; Name=rna-TanjilR_29874; organism=Lupinus angustifolius; type=mRNA; length=798bp
ATGATAACAGATCGCAAACCGAATTGTAAAGCTCCCGGATCTGCATGTTT
GGACCCACGTTTTGTTGGTGCAGATGGCATTGTTTACTATTTCCATGGAA
GGCGCGACCAACATTTCAGCTTAGTATCTGATGTTAACCTACAAATCAAT
GCGCGTTTCATCGGCCTCAGGCCAGAAGGCAGAACCAGGGATTATACATG
GATTCAAGCACTTGGAATCCTCTTCAACTCTCACAATTTTTCTGTTGAGG
CCACCCCAGCAGCAACATGGAATGATGAAATTGACCATTTGAAACTCTCT
TACAATGGAGAAGAACTTGTCATTCCAGAAAGTCACCTCTCTAAATGGCA
GTGCCCACAAGATCAACTTAGAATAGAAAGAACATCTAGCAAGAACAGTG
TTACAGTTACTATACCAGAAATTGCAGAGATATTTATCAATGTAGTATAT
GTCACTAAGGAAGATAGTAGAATCCACAACTATCAAATCCCTGATGATGA
TTGCTTTGTGCACTTGGAAGTGCAGTTCAAATTCTATGATTTATCATCCA
AAGTTGAAGGAGTTCTAGGAAGGACTTATCAGCCAGATTTTCAAAATCCA
GCAGCAAAGTTAGGTGTGGCAATGCCAATAGTTGGAGGGGAAGATAAGTA
CAGAACAACATCACTTCTTTCTGCAGATTGTGGAGTTTGCATGTTTGATC
CTTCTGAAGCTTCAGAAAAGAACTCAATGATGGAATATAGTATGCTGGAT
TGCACTGGTGTTACTAAAAGTGGGAATGGTATTGTTTGCAGAAGATAA
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protein sequence of rna-TanjilR_29874_La_Tanjil_v1.0

>rna-TanjilR_29874_La_Tanjil_v1.0 ID=rna-TanjilR_29874_La_Tanjil_v1.0; Name=rna-TanjilR_29874_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=265bp
MITDRKPNCKAPGSACLDPRFVGADGIVYYFHGRRDQHFSLVSDVNLQIN
ARFIGLRPEGRTRDYTWIQALGILFNSHNFSVEATPAATWNDEIDHLKLS
YNGEELVIPESHLSKWQCPQDQLRIERTSSKNSVTVTIPEIAEIFINVVY
VTKEDSRIHNYQIPDDDCFVHLEVQFKFYDLSSKVEGVLGRTYQPDFQNP
AAKLGVAMPIVGGEDKYRTTSLLSADCGVCMFDPSEASEKNSMMEYSMLD
CTGVTKSGNGIVCRR
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mRNA from alignment at Chr_LG08-CM007368.1:20899983..20900780-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_29874_La_Tanjil_v1.0 ID=rna-TanjilR_29874_La_Tanjil_v1.0; Name=rna-TanjilR_29874; organism=Lupinus angustifolius; type=mRNA; length=798bp; location=Sequence derived from: Chr_LG08-CM007368.1:20899983..20900780- (Lupinus angustifolius
ATGATAACAGATCGCAAACCGAATTGTAAAGCTCCCGGATCTGCATGTTT
GGACCCACGTTTTGTTGGTGCAGATGGCATTGTTTACTATTTCCATGGAA
GGCGCGACCAACATTTCAGCTTAGTATCTGATGTTAACCTACAAATCAAT
GCGCGTTTCATCGGCCTCAGGCCAGAAGGCAGAACCAGGGATTATACATG
GATTCAAGCACTTGGAATCCTCTTCAACTCTCACAATTTTTCTGTTGAGG
CCACCCCAGCAGCAACATGGAATGATGAAATTGACCATTTGAAACTCTCT
TACAATGGAGAAGAACTTGTCATTCCAGAAAGTCACCTCTCTAAATGGCA
GTGCCCACAAGATCAACTTAGAATAGAAAGAACATCTAGCAAGAACAGTG
TTACAGTTACTATACCAGAAATTGCAGAGATATTTATCAATGTAGTATAT
GTCACTAAGGAAGATAGTAGAATCCACAACTATCAAATCCCTGATGATGA
TTGCTTTGTGCACTTGGAAGTGCAGTTCAAATTCTATGATTTATCATCCA
AAGTTGAAGGAGTTCTAGGAAGGACTTATCAGCCAGATTTTCAAAATCCA
GCAGCAAAGTTAGGTGTGGCAATGCCAATAGTTGGAGGGGAAGATAAGTA
CAGAACAACATCACTTCTTTCTGCAGATTGTGGAGTTTGCATGTTTGATC
CTTCTGAAGCTTCAGAAAAGAACTCAATGATGGAATATAGTATGCTGGAT
TGCACTGGTGTTACTAAAAGTGGGAATGGTATTGTTTGCAGAAGATAA
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Coding sequence (CDS) from alignment at Chr_LG08-CM007368.1:20899983..20900780-

>rna-TanjilR_29874_La_Tanjil_v1.0 ID=rna-TanjilR_29874_La_Tanjil_v1.0; Name=rna-TanjilR_29874; organism=Lupinus angustifolius; type=CDS; length=798bp; location=Sequence derived from: Chr_LG08-CM007368.1:20899983..20900780- (Lupinus angustifolius
ATGATAACAGATCGCAAACCGAATTGTAAAGCTCCCGGATCTGCATGTTT
GGACCCACGTTTTGTTGGTGCAGATGGCATTGTTTACTATTTCCATGGAA
GGCGCGACCAACATTTCAGCTTAGTATCTGATGTTAACCTACAAATCAAT
GCGCGTTTCATCGGCCTCAGGCCAGAAGGCAGAACCAGGGATTATACATG
GATTCAAGCACTTGGAATCCTCTTCAACTCTCACAATTTTTCTGTTGAGG
CCACCCCAGCAGCAACATGGAATGATGAAATTGACCATTTGAAACTCTCT
TACAATGGAGAAGAACTTGTCATTCCAGAAAGTCACCTCTCTAAATGGCA
GTGCCCACAAGATCAACTTAGAATAGAAAGAACATCTAGCAAGAACAGTG
TTACAGTTACTATACCAGAAATTGCAGAGATATTTATCAATGTAGTATAT
GTCACTAAGGAAGATAGTAGAATCCACAACTATCAAATCCCTGATGATGA
TTGCTTTGTGCACTTGGAAGTGCAGTTCAAATTCTATGATTTATCATCCA
AAGTTGAAGGAGTTCTAGGAAGGACTTATCAGCCAGATTTTCAAAATCCA
GCAGCAAAGTTAGGTGTGGCAATGCCAATAGTTGGAGGGGAAGATAAGTA
CAGAACAACATCACTTCTTTCTGCAGATTGTGGAGTTTGCATGTTTGATC
CTTCTGAAGCTTCAGAAAAGAACTCAATGATGGAATATAGTATGCTGGAT
TGCACTGGTGTTACTAAAAGTGGGAATGGTATTGTTTGCAGAAGATAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR009646Root_cap