rna-TanjilR_11694
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_11694 vs. DB:Swiss
Match: TPX2_ARATH (Protein TPX2 OS=Arabidopsis thaliana OX=3702 GN=TPX2 PE=1 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.280e-111 Identity = 62/127 (48.82%), Postives = 77/127 (60.63%), Query Frame = 3 Query: 1980 KVYVRETPKPAPVPFISTAEMIRRFQSSTRDLSLSNAISNVIYYXXXXXXXXXXXXNTF*CLTNYLGDATSMIQTKPKLTLTRPKEPDFETTQRARPARMKSTAELEEEMMAKMPKFKARPVNKKVL 2360 KVYVRE PF+STAE++++FQ+STRDL +Q +PKLTLTRPKEP+F T+QRARP R+KS+AELEEEM+AK+PKFKARPVNKK+L Sbjct: 280 KVYVREQI----APFVSTAELMKKFQTSTRDL---------------------------------------FVQNRPKLTLTRPKEPEFVTSQRARPLRVKSSAELEEEMLAKIPKFKARPVNKKIL 363 HSP 2 Score: 83.1889 bits (204), Expect = 2.280e-111 Identity = 57/109 (52.29%), Postives = 72/109 (66.06%), Query Frame = 2 Query: 2582 LQEFHLETMTRAHQNADSASIASTELSYKVLLEQYNPLVICIHLDSLVTFFSFCQENLGKPHHLTEPKTPVLQTSLRARPAKVKSSXXXXXXXXXKIPKFKARPLNKKV 2908 QEFHL+TM RA+Q+A+++SIASTE+S +Q+N + HHLTEPK+PVLQT LRARP K++ ELEQEELEK PKFKA+PLNKK+ Sbjct: 381 FQEFHLQTMARANQHAETSSIASTEVS-----KQHN----------------------DQKHHLTEPKSPVLQTMLRARPTIAKTTAELEQEELEKAPKFKAKPLNKKI 462 HSP 3 Score: 77.0258 bits (188), Expect = 2.280e-111 Identity = 31/46 (67.39%), Postives = 41/46 (89.13%), Query Frame = 1 Query: 2986 QIFESKGDIGIFCNTKKHVTEPQEFHFATNERIPPPAAMADLFEKV 3123 +IFESKG++GIFCNTKKH+T PQEFHFAT+ERI P ++ D+F+K+ Sbjct: 461 KIFESKGEMGIFCNTKKHITIPQEFHFATDERISRPESVLDIFDKL 506 HSP 4 Score: 73.559 bits (179), Expect = 2.280e-111 Identity = 70/126 (55.56%), Postives = 83/126 (65.87%), Query Frame = 1 Query: 3385 CQERGAEKERRLCMELLQKQMEEERARVPKANPYPYTTDYPVVKKFVNLVAHGSSY*LIALLNY*YHHVQVPPKPEPKQCTKPEPFQLESLVXXXXXXXXXXXXXXXXXXXXXXXXXFKAQPVLKE 3762 +ERGAEKE++ MEL+ K++ + +ARVPKANPYPYTTDYPVV EPKQCT+PEPFQLESLVRHEEEM+RE EE+ RME EEA+ R FKAQPV+KE Sbjct: 531 TEERGAEKEKKFYMELMYKKLGDVKARVPKANPYPYTTDYPVVPPKP----------------------------EPKQCTQPEPFQLESLVRHEEEMRREREERRRMETEEAQKRLFKAQPVIKE 628 HSP 5 Score: 62.7734 bits (151), Expect = 2.280e-111 Identity = 27/37 (72.97%), Postives = 32/37 (86.49%), Query Frame = 3 Query: 3855 DPIPVPEKIRKPLTQVQGFNLRVEHRAVDRAQFDEKV 3965 DPIPVPEK+R PLT++Q FNL VEHRAV+RA FD K+ Sbjct: 629 DPIPVPEKVRMPLTEIQEFNLHVEHRAVERADFDHKI 665 HSP 6 Score: 57.7658 bits (138), Expect = 2.280e-111 Identity = 24/33 (72.73%), Postives = 29/33 (87.88%), Query Frame = 1 Query: 4240 IEEEKALKQLRRTMVPHARPVPKFDHPFCPQKC 4338 +EEE+ALKQ+R+TMVPHARPVP F+ PF PQK Sbjct: 685 VEEERALKQMRKTMVPHARPVPNFNKPFLPQKS 717 HSP 7 Score: 37.7354 bits (86), Expect = 2.280e-111 Identity = 17/22 (77.27%), Postives = 19/22 (86.36%), Query Frame = 2 Query: 4085 QIKEKEMMYKRYREESEAERMV 4150 +IKEKE YKRYREESEA +MV Sbjct: 664 KIKEKENQYKRYREESEAAKMV 685 HSP 8 Score: 37.3502 bits (85), Expect = 2.280e-111 Identity = 19/35 (54.29%), Postives = 24/35 (68.57%), Query Frame = 2 Query: 3209 SFIFLVLQLSLKSEQNHN-PIPRNTTPNPFHLHTE 3310 S + + +LSL SE H P+PRNT PNPF+L TE Sbjct: 498 SVLDIFDKLSLNSESCHEKPLPRNTAPNPFNLKTE 532 HSP 9 Score: 33.8834 bits (76), Expect = 2.280e-111 Identity = 18/36 (50.00%), Postives = 21/36 (58.33%), Query Frame = 2 Query: 4439 RSAKDTTKPKSPNLHVLHRKERRKVFNGTVISTPAS 4546 +S K TTK KSPNL V+ R ERR + IS S Sbjct: 716 KSNKGTTKAKSPNLRVIKRTERRTMMARPTISAATS 751 HSP 10 Score: 20.7866 bits (42), Expect = 2.280e-111 Identity = 11/21 (52.38%), Postives = 12/21 (57.14%), Query Frame = 1 Query: 2440 ILQTPTLLPIPRSTPQPPEFK 2502 IL P L RSTP PEF+ Sbjct: 362 ILAAPALPAPQRSTPHLPEFQ 382 HSP 11 Score: 65.4698 bits (158), Expect = 3.351e-9 Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 1 Query: 7 EVTGAGSSDNGCVTMIDETYEFSAPRFFDFINGESDEDKSKAELWFDTDLFYAPS 171 E T S TM+DETYEF APR+FDF+NGE++++ +AELWF + L APS Sbjct: 2 EATAEESVSTLVTTMVDETYEFLAPRWFDFVNGETEDESRRAELWFQSALSCAPS 56 HSP 12 Score: 58.151 bits (139), Expect = 6.346e-7 Identity = 39/90 (43.33%), Postives = 52/90 (57.78%), Query Frame = 2 Query: 1532 ACTPNPTLQKRVS--STNSKKQQTVKKIVMSAKH----------QIRSSAKKST---------AATPNLIQENQAIKRQKLEEGKTRQVI 1738 ACTP P +Q + S + KKQQT +KI K+ Q + S +KS A+T NLIQENQAIKRQKL++GK+RQ++ Sbjct: 155 ACTPKPPMQFSLGAKSVDLKKQQTARKIASLLKNPSTLRPKNQSQAKGSHQKSVKGETNLNNIASTTNLIQENQAIKRQKLDDGKSRQIL 244 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_11694 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 1 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_11694_La_Tanjil_v1.0 ID=rna-TanjilR_11694_La_Tanjil_v1.0; Name=rna-TanjilR_11694; organism=Lupinus angustifolius; type=mRNA; length=4558bpback to top protein sequence of rna-TanjilR_11694_La_Tanjil_v1.0 >rna-TanjilR_11694_La_Tanjil_v1.0 ID=rna-TanjilR_11694_La_Tanjil_v1.0; Name=rna-TanjilR_11694_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=779bpback to top mRNA from alignment at Chr_LG08-CM007368.1:21873464..21878021+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_11694_La_Tanjil_v1.0 ID=rna-TanjilR_11694_La_Tanjil_v1.0; Name=rna-TanjilR_11694; organism=Lupinus angustifolius; type=mRNA; length=4558bp; location=Sequence derived from: Chr_LG08-CM007368.1:21873464..21878021+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG08-CM007368.1:21873464..21878021+ >rna-TanjilR_11694_La_Tanjil_v1.0 ID=rna-TanjilR_11694_La_Tanjil_v1.0; Name=rna-TanjilR_11694; organism=Lupinus angustifolius; type=CDS; length=2340bp; location=Sequence derived from: Chr_LG08-CM007368.1:21873464..21878021+ (Lupinus angustifoliusback to top |