rna-TanjilR_23614

Transcript Overview
Namerna-TanjilR_23614
Unique Namerna-TanjilR_23614_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length917
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG08-CM007368.1supercontigChr_LG08-CM007368.1:23379192..23380108 -Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL122Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL254Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL543Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL591Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL606Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL607Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR1264Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR1326Cicer arietinum ICC 4958 genome v2Cicer arietinum
anccR1402Cajanus cajan Asha genome v1.0Cajanus cajan
anccR1443Cajanus cajan Asha genome v1.0Cajanus cajan
anccR1454Cajanus cajan Asha genome v1.0Cajanus cajan
ancaR1092Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR1146Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancrR1284Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ancrR1306Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ancrR1347Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ancrR1355Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0948Pisum sativum Cameor genome v1aPisum sativum
anpsR0964Pisum sativum Cameor genome v1aPisum sativum
anpsR0970Pisum sativum Cameor genome v1aPisum sativum
anpsR0971Pisum sativum Cameor genome v1aPisum sativum
anpvR1275Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR1302Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR1084Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR1110Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR1202Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR1274Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR1085Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR1107Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR1111Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anvfhR1179Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR1165Vicia faba cv. Tiffany genome v1.0Vicia faba
anvrvR1072Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR1089Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR1036Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR1063Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR1203Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR1231Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR1240Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR1286Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR0998Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0999Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR1045Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR1191Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR1247Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR1062Cicer arietinum
ancarR1097Cicer arietinum
ancarR1105Cicer arietinum
anccaR1056Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR1080Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR1271Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR1276Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR1283Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR1148Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR1150Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR1186Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvstR1261Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvstR1266Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR1275Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvasR1283Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR1275Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvunR1045Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR1070Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR1313Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR1340Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
rna-XM_014641687.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-XM_014636415.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
rna-XM_004487509.2Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vigst.07G050100.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
jg44322.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigst.06G155900.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Phvul.005G130700.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Ca_17458Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vigun11g135400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
PvulFLAVERTChr05.1000959Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vum_06G01164.1Vigna umbellata FF25 genome v1.0Vigna umbellata
jg9472.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
XM_058923780.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Cr_01290.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Vigun11g135400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vigan.07G066600.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
rna-KK1_022226Cajanus cajan Asha genome v1.0Cajanus cajan
Cr_14765.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Cr_17470.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Vigan.06G176200.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vfaba.Hedin2.R1.6g024640.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
LR48_mrnaVigan08g146800Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Phvul.011G085800.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Cc_v2.0_23690.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Cc_v2.0_09477.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Va05G049200.2Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
evm.model.Chr05.2306Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
LR48_mrnaVigan05g175100Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vigun05g244100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Psat7g191760.1Pisum sativum Cameor genome v1aPisum sativum
rna-XM_004486982.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
evm.model.Chr11.1296Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Psat5g253360.1Pisum sativum Cameor genome v1aPisum sativum
Vum_07G00537.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vfaba.Tiffany.R1.6g019160.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Psat07G0458900-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
PvulFLAVERTChr11.510Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Ca_06995Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Ca_11029.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
rna-XM_004506011.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Psat05G0711600-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Va08G060840.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vigun05g244100.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
rna-KK1_026317Cajanus cajan Asha genome v1.0Cajanus cajan

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-TanjilR_30183Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-TanjilR_11260Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-TanjilR_03228Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_23614gene-TanjilG_23614_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_23614rna-TanjilR_23614_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_23614_La_Tanjil_v1.0rna-TanjilR_23614_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_23614_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:23380055..23380108rna-TanjilR_23614_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:23380055..23380108Lupinus angustifoliusCDS
rna-TanjilR_23614_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:23379192..23379896rna-TanjilR_23614_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:23379192..23379896Lupinus angustifoliusCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_23614_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:23380055..23380108rna-TanjilR_23614_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:23380055..23380108Lupinus angustifoliusexon
rna-TanjilR_23614_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:23379192..23379896rna-TanjilR_23614_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:23379192..23379896Lupinus angustifoliusexon


Homology
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_23614 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 52..79
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 206..227
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 181..205
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 108..134
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 181..230
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..134
IPR012862Protein of unknown function DUF1635PFAMPF07795DUF1635coord: 18..249
e-value: 3.6E-94
score: 314.8

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_23614_La_Tanjil_v1.0 ID=rna-TanjilR_23614_La_Tanjil_v1.0; Name=rna-TanjilR_23614; organism=Lupinus angustifolius; type=mRNA; length=917bp
ATGGAGAATCAACGCACCCCTCTTCTAAGTTGGGCCTATTACTGCCAGGG
AAAGGTATATACTTCATTTTATCCTTCATCTCTTTCCATTCATTACAGAA
ACTAATGCTACTTACTTGCATGTTTTATGCATAAAGAATGTCTAATAGCT
CCTAGTTATAGGACTAATTGTTTTTTATATTTGTATGTAACTTTTATTTG
ATGATGATGCAGTCAATGGAGGAACTGAGGCAGAACCTTTTGTACACAAC
TATGGAGCTTGAACAAACAAGAGCAACAGTGCAAGATGAGCTCAAAAAGA
GAGATGATCAACTACTCAACCTAAAGGAGCTTCTTAACAAAGTTATAAGA
GAAAGAGATGAAGCACAAGAGAAATGCCACAAACTTCTCTTGGAGAAGTT
TGTGTTGCAGCAGCAACAGCACCAAACAGCTCCAATATCTGGAATCTCAA
GCATTGAAGATGACCCTAGAAGAGGAATTGACTCAAACAATGGCCTTTCA
TCATCAGACTGTGAAGAAAGCATTGTTTCTTCTCCACAACCACAATTGCA
GCAGCCATTAAGAGAAACAATGATGATTGAGTTAACACCTGACAAACCTT
TACCAGAAAAGGGTAAGCTTTTACAAGCAGTATTGAAAGCTGGGCCTCTC
CTTCAAACCTTGCTACTTGCAGGACCACTTCCTCAATGGAGGCACCCTCC
ACCACCACTTGAGTCCTTTGAGATTCCACCTGTCACCATTCCATCACCAC
CACCACCACCACCACAGCTTCTCCACCAAGATTCCTTTGGTAACAACAAT
GCAAATGGAAACAGCAGCACTCCCACCAACTGTGGAAGAGTCAGTAGAAA
AAGGGTTTTATGTGAGGGTTCTGATTCTCCTTCAGAGAACAAGTACCAAA
GGATTGTACTCCACTGA
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protein sequence of rna-TanjilR_23614_La_Tanjil_v1.0

>rna-TanjilR_23614_La_Tanjil_v1.0 ID=rna-TanjilR_23614_La_Tanjil_v1.0; Name=rna-TanjilR_23614_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=252bp
MENQRTPLLSWAYYCQGKSMEELRQNLLYTTMELEQTRATVQDELKKRDD
QLLNLKELLNKVIRERDEAQEKCHKLLLEKFVLQQQQHQTAPISGISSIE
DDPRRGIDSNNGLSSSDCEESIVSSPQPQLQQPLRETMMIELTPDKPLPE
KGKLLQAVLKAGPLLQTLLLAGPLPQWRHPPPPLESFEIPPVTIPSPPPP
PPQLLHQDSFGNNNANGNSSTPTNCGRVSRKRVLCEGSDSPSENKYQRIV
LH
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mRNA from alignment at Chr_LG08-CM007368.1:23379192..23380108-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_23614_La_Tanjil_v1.0 ID=rna-TanjilR_23614_La_Tanjil_v1.0; Name=rna-TanjilR_23614; organism=Lupinus angustifolius; type=mRNA; length=917bp; location=Sequence derived from: Chr_LG08-CM007368.1:23379192..23380108- (Lupinus angustifolius
ATGGAGAATCAACGCACCCCTCTTCTAAGTTGGGCCTATTACTGCCAGGG
AAAGGTATATACTTCATTTTATCCTTCATCTCTTTCCATTCATTACAGAA
ACTAATGCTACTTACTTGCATGTTTTATGCATAAAGAATGTCTAATAGCT
CCTAGTTATAGGACTAATTGTTTTTTATATTTGTATGTAACTTTTATTTG
ATGATGATGCAGTCAATGGAGGAACTGAGGCAGAACCTTTTGTACACAAC
TATGGAGCTTGAACAAACAAGAGCAACAGTGCAAGATGAGCTCAAAAAGA
GAGATGATCAACTACTCAACCTAAAGGAGCTTCTTAACAAAGTTATAAGA
GAAAGAGATGAAGCACAAGAGAAATGCCACAAACTTCTCTTGGAGAAGTT
TGTGTTGCAGCAGCAACAGCACCAAACAGCTCCAATATCTGGAATCTCAA
GCATTGAAGATGACCCTAGAAGAGGAATTGACTCAAACAATGGCCTTTCA
TCATCAGACTGTGAAGAAAGCATTGTTTCTTCTCCACAACCACAATTGCA
GCAGCCATTAAGAGAAACAATGATGATTGAGTTAACACCTGACAAACCTT
TACCAGAAAAGGGTAAGCTTTTACAAGCAGTATTGAAAGCTGGGCCTCTC
CTTCAAACCTTGCTACTTGCAGGACCACTTCCTCAATGGAGGCACCCTCC
ACCACCACTTGAGTCCTTTGAGATTCCACCTGTCACCATTCCATCACCAC
CACCACCACCACCACAGCTTCTCCACCAAGATTCCTTTGGTAACAACAAT
GCAAATGGAAACAGCAGCACTCCCACCAACTGTGGAAGAGTCAGTAGAAA
AAGGGTTTTATGTGAGGGTTCTGATTCTCCTTCAGAGAACAAGTACCAAA
GGATTGTACTCCACTGA
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Coding sequence (CDS) from alignment at Chr_LG08-CM007368.1:23379192..23380108-

>rna-TanjilR_23614_La_Tanjil_v1.0 ID=rna-TanjilR_23614_La_Tanjil_v1.0; Name=rna-TanjilR_23614; organism=Lupinus angustifolius; type=CDS; length=759bp; location=Sequence derived from: Chr_LG08-CM007368.1:23379192..23380108- (Lupinus angustifolius
ATGGAGAATCAACGCACCCCTCTTCTAAGTTGGGCCTATTACTGCCAGGG
AAAGTCAATGGAGGAACTGAGGCAGAACCTTTTGTACACAACTATGGAGC
TTGAACAAACAAGAGCAACAGTGCAAGATGAGCTCAAAAAGAGAGATGAT
CAACTACTCAACCTAAAGGAGCTTCTTAACAAAGTTATAAGAGAAAGAGA
TGAAGCACAAGAGAAATGCCACAAACTTCTCTTGGAGAAGTTTGTGTTGC
AGCAGCAACAGCACCAAACAGCTCCAATATCTGGAATCTCAAGCATTGAA
GATGACCCTAGAAGAGGAATTGACTCAAACAATGGCCTTTCATCATCAGA
CTGTGAAGAAAGCATTGTTTCTTCTCCACAACCACAATTGCAGCAGCCAT
TAAGAGAAACAATGATGATTGAGTTAACACCTGACAAACCTTTACCAGAA
AAGGGTAAGCTTTTACAAGCAGTATTGAAAGCTGGGCCTCTCCTTCAAAC
CTTGCTACTTGCAGGACCACTTCCTCAATGGAGGCACCCTCCACCACCAC
TTGAGTCCTTTGAGATTCCACCTGTCACCATTCCATCACCACCACCACCA
CCACCACAGCTTCTCCACCAAGATTCCTTTGGTAACAACAATGCAAATGG
AAACAGCAGCACTCCCACCAACTGTGGAAGAGTCAGTAGAAAAAGGGTTT
TATGTGAGGGTTCTGATTCTCCTTCAGAGAACAAGTACCAAAGGATTGTA
CTCCACTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR012862DUF1635