rna-TanjilR_23567
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_23567 vs. DB:Swiss
Match: RAP27_ARATH (Ethylene-responsive transcription factor RAP2-7 OS=Arabidopsis thaliana OX=3702 GN=RAP2-7 PE=2 SV=2) HSP 1 Score: 129.413 bits (324), Expect = 2.708e-30 Identity = 63/100 (63.00%), Postives = 70/100 (70.00%), Query Frame = 3 Query: 1029 VKFRGIRADINFSLSDYEDDLKQVGKSHKHFIYMKIDGACD*NFHPFTGAQMKNLSKEEFIHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKK 1328
+KFRG+ ADINF+L DYE+D+KQV +NLSKEEF+HILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKK
Sbjct: 197 IKFRGVDADINFTLGDYEEDMKQV----------------------------QNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKK 268 HSP 2 Score: 78.1814 bits (191), Expect = 1.484e-13 Identity = 83/177 (46.89%), Postives = 101/177 (57.06%), Query Frame = 1 Query: 1 MFDLNLNSDLADSTKNCNSVQLMEKFPEDYC-NKMAESATSNSSVVNADGSSNDDSYSTRAEEAFTVDFGIRK---------AEGRNDVVTMELFPVN-------EVEGVLFG-NWNQTSSFDR----QSVTXXXXXXXXXXXXXXXXXXXXXXXXXXQYRGVTFYRRTGRWESHIW 465
M DLNLN+D +ST+ L + ++ N++ ES TS SSV+NADG ++DS STR AFT+ F I K + + VT E FPV+ +VEG NW SFDR ++ P P QVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIW
Sbjct: 1 MLDLNLNADSPESTQYGGDSYLDRQTSDNSAGNRVEESGTSTSSVINADG--DEDSCSTR---AFTLSFDILKVGSSSGGDESPAASASVTKEFFPVSGDCGHLRDVEGSSSSRNWIDL-SFDRIGDGETKLVTPVPTPAPVPAQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIW 171
BLAST of rna-TanjilR_23567 vs. DB:Swiss
Match: AP2_ARATH (Floral homeotic protein APETALA 2 OS=Arabidopsis thaliana OX=3702 GN=AP2 PE=1 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 1.227e-29 Identity = 60/100 (60.00%), Postives = 68/100 (68.00%), Query Frame = 3 Query: 1029 VKFRGIRADINFSLSDYEDDLKQVGKSHKHFIYMKIDGACD*NFHPFTGAQMKNLSKEEFIHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKK 1328
+KFRG+ ADINF++ DY+DDLK QM NL+KEEF+H+LRRQSTGF RGSSKYRGVTLHKCGRWEARMGQFLGKK
Sbjct: 175 IKFRGVEADINFNIDDYDDDLK----------------------------QMTNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKK 246 HSP 2 Score: 54.6842 bits (130), Expect = 4.538e-12 Identity = 23/38 (60.53%), Postives = 32/38 (84.21%), Query Frame = 2 Query: 1748 RAYDKAAIKCNGREAVTNFEPSIYEGEMKSAANNESST 1861
RAYDKAAIKCNG++AVTNF+PSIY+ E+ + ++ +T
Sbjct: 261 RAYDKAAIKCNGKDAVTNFDPSIYDEELNAESSGNPTT 298 HSP 3 Score: 35.4242 bits (80), Expect = 4.538e-12 Identity = 14/19 (73.68%), Postives = 18/19 (94.74%), Query Frame = 3 Query: 1605 RYIYLGLFDSEVEAARSSD 1661
+Y+YLGLFD+EVEAAR+ D
Sbjct: 246 KYVYLGLFDTEVEAARAYD 264 HSP 4 Score: 23.8682 bits (50), Expect = 4.538e-12 Identity = 15/38 (39.47%), Postives = 21/38 (55.26%), Query Frame = 1 Query: 1966 TGSSHNLDLNLG-MATPGHGVKEKRV---QFQFPSVHA 2067
T HNLDL+LG A H ++ R+ Q Q S+H+
Sbjct: 298 TPQDHNLDLSLGNSANSKHKSQDMRLRMNQQQQDSLHS 335
BLAST of rna-TanjilR_23567 vs. DB:Swiss
Match: TOE3_ARATH (AP2-like ethylene-responsive transcription factor TOE3 OS=Arabidopsis thaliana OX=3702 GN=TOE3 PE=1 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 2.723e-26 Identity = 57/100 (57.00%), Postives = 66/100 (66.00%), Query Frame = 3 Query: 1029 VKFRGIRADINFSLSDYEDDLKQVGKSHKHFIYMKIDGACD*NFHPFTGAQMKNLSKEEFIHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKK 1328
+KFRG+ ADINF + DY DDLKQ+G NL+KEEF+H+LRRQSTGF RGSSKYRGVTLHKCGRWE+R+GQFL KK
Sbjct: 140 IKFRGVDADINFDIEDYLDDLKQMG----------------------------NLTKEEFMHVLRRQSTGFPRGSSKYRGVTLHKCGRWESRLGQFLNKK 211 HSP 2 Score: 51.2174 bits (121), Expect = 1.545e-9 Identity = 21/27 (77.78%), Postives = 25/27 (92.59%), Query Frame = 2 Query: 1748 RAYDKAAIKCNGREAVTNFEPSIYEGE 1828
RAYDKAAIKCNG++AVTNF+P +YE E
Sbjct: 226 RAYDKAAIKCNGKDAVTNFDPKVYEEE 252 HSP 3 Score: 35.039 bits (79), Expect = 1.545e-9 Identity = 13/19 (68.42%), Postives = 18/19 (94.74%), Query Frame = 3 Query: 1605 RYIYLGLFDSEVEAARSSD 1661
+Y+YLGLFD+E+EAAR+ D
Sbjct: 211 KYVYLGLFDTEIEAARAYD 229
BLAST of rna-TanjilR_23567 vs. DB:Swiss
Match: TOE2_ARATH (AP2-like ethylene-responsive transcription factor TOE2 OS=Arabidopsis thaliana OX=3702 GN=TOE2 PE=1 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 1.351e-15 Identity = 45/99 (45.45%), Postives = 55/99 (55.56%), Query Frame = 3 Query: 1029 VKFRGIRADINFSLSDYEDDLKQVGKSHKHFIYMKIDGACD*NFHPFTGAQMKNLSKEEFIHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGK 1325
VKFRG+ ADINF + DYE+DLKQ M NLSKEE + +LRRQS+GFSR +S+Y+GV L K G W A+M Q G
Sbjct: 204 VKFRGLEADINFVIGDYEEDLKQ----------------------------MANLSKEEVVQVLRRQSSGFSRNNSRYQGVALQKIGGWGAQMEQLHGN 274
BLAST of rna-TanjilR_23567 vs. DB:Swiss
Match: AIL5_ARATH (AP2-like ethylene-responsive transcription factor AIL5 OS=Arabidopsis thaliana OX=3702 GN=AIL5 PE=2 SV=2) HSP 1 Score: 78.9518 bits (193), Expect = 1.319e-13 Identity = 42/108 (38.89%), Postives = 62/108 (57.41%), Query Frame = 3 Query: 1008 RAYDRAAVKFRGIRADINFSLSDYEDDLKQVGKSHKHFIYMKIDGACD*NFHPFTGAQMKNLSKEEFIHILRRQSTGFSRGSSKYRGVTL-HKCGRWEARMGQFLGKK 1328
RAYD AA+K+ G NF +S+YE +L+ +MK+++++EF+ LRR+S+GFSRG+S YRGVT H+ GRW+AR+G+ G K
Sbjct: 250 RAYDLAALKYWGPTTTTNFPISNYESELE----------------------------EMKHMTRQEFVASLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNK 329
BLAST of rna-TanjilR_23567 vs. DB:Swiss
Match: CRL5_ORYSJ (AP2-like ethylene-responsive transcription factor CRL5 OS=Oryza sativa subsp. japonica OX=39947 GN=CRL5 PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 1.820e-13 Identity = 43/108 (39.81%), Postives = 63/108 (58.33%), Query Frame = 3 Query: 1008 RAYDRAAVKFRGIRADINFSLSDYEDDLKQVGKSHKHFIYMKIDGACD*NFHPFTGAQMKNLSKEEFIHILRRQSTGFSRGSSKYRGVT-LHKCGRWEARMGQFLGKK 1328
RAYD AA+K+ G INF L DY+++L++ MKN++++E++ LRR+S+GFSRG+S YRGVT H+ GRW+AR+G+ G K
Sbjct: 332 RAYDLAALKYWGPSTHINFPLEDYQEELEE----------------------------MKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVSGNK 411
BLAST of rna-TanjilR_23567 vs. DB:Swiss
Match: AIL1_ARATH (AP2-like ethylene-responsive transcription factor AIL1 OS=Arabidopsis thaliana OX=3702 GN=AIL1 PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 5.882e-13 Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = 3 Query: 1008 RAYDRAAVKFRGIRADINFSLSDYEDDLKQVGKSHKHFIYMKIDGACD*NFHPFTGAQMKNLSKEEFIHILRRQSTGFSRGSSKYRGVT-LHKCGRWEARMGQFLGKK 1328
RAYD AA+K+ G +NF LS+YE ++++ + N++++EF+ +LRR S+GFSRG+S YRGVT H+ GRW+AR+G+ G K
Sbjct: 270 RAYDLAALKYWGPTTHLNFPLSNYEKEIEE----------------------------LNNMNRQEFVAMLRRNSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNK 349
BLAST of rna-TanjilR_23567 vs. DB:Swiss
Match: PLET2_ARATH (AP2-like ethylene-responsive transcription factor PLT2 OS=Arabidopsis thaliana OX=3702 GN=PLT2 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.351e-12 Identity = 40/108 (37.04%), Postives = 62/108 (57.41%), Query Frame = 3 Query: 1008 RAYDRAAVKFRGIRADINFSLSDYEDDLKQVGKSHKHFIYMKIDGACD*NFHPFTGAQMKNLSKEEFIHILRRQSTGFSRGSSKYRGVT-LHKCGRWEARMGQFLGKK 1328
RAYD AA+K+ G NF +++YE ++++ MKN++++EF+ +RR+S+GFSRG+S YRGVT H+ GRW+AR+G+ G K
Sbjct: 237 RAYDLAALKYWGPSTTTNFPITNYEKEVEE----------------------------MKNMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNK 316
BLAST of rna-TanjilR_23567 vs. DB:Swiss
Match: BBM_ARATH (AP2-like ethylene-responsive transcription factor BBM OS=Arabidopsis thaliana OX=3702 GN=BBM PE=2 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 1.458e-12 Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = 3 Query: 1008 RAYDRAAVKFRGIRADINFSLSDYEDDLKQVGKSHKHFIYMKIDGACD*NFHPFTGAQMKNLSKEEFIHILRRQSTGFSRGSSKYRGVTL-HKCGRWEARMGQFLGKK 1328
RAYD AA+K+ G NF LS+YE +++ +MK+++++E++ LRR+S+GFSRG+S YRGVT H+ GRW+AR+G+ G K
Sbjct: 257 RAYDLAALKYWGTTTTTNFPLSEYEKEVE----------------------------EMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNK 336
BLAST of rna-TanjilR_23567 vs. DB:Swiss
Match: BBM2_BRANA (AP2-like ethylene-responsive transcription factor BBM2 OS=Brassica napus OX=3708 GN=BBM2 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 2.575e-12 Identity = 40/108 (37.04%), Postives = 62/108 (57.41%), Query Frame = 3 Query: 1008 RAYDRAAVKFRGIRADINFSLSDYEDDLKQVGKSHKHFIYMKIDGACD*NFHPFTGAQMKNLSKEEFIHILRRQSTGFSRGSSKYRGVTL-HKCGRWEARMGQFLGKK 1328
RAYD AA+K+ G NF +S+YE +++ +MK+++++E++ LRR+S+GFSRG+S YRGVT H+ GRW+AR+G+ G K
Sbjct: 257 RAYDLAALKYWGTTTTTNFPMSEYEKEIE----------------------------EMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNK 336 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_23567 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_23567_La_Tanjil_v1.0 ID=rna-TanjilR_23567_La_Tanjil_v1.0; Name=rna-TanjilR_23567; organism=Lupinus angustifolius; type=mRNA; length=3231bpback to top protein sequence of rna-TanjilR_23567_La_Tanjil_v1.0 >rna-TanjilR_23567_La_Tanjil_v1.0 ID=rna-TanjilR_23567_La_Tanjil_v1.0; Name=rna-TanjilR_23567_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=414bpback to top mRNA from alignment at Chr_LG08-CM007368.1:23821626..23824856- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_23567_La_Tanjil_v1.0 ID=rna-TanjilR_23567_La_Tanjil_v1.0; Name=rna-TanjilR_23567; organism=Lupinus angustifolius; type=mRNA; length=3231bp; location=Sequence derived from: Chr_LG08-CM007368.1:23821626..23824856- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG08-CM007368.1:23821626..23824856- >rna-TanjilR_23567_La_Tanjil_v1.0 ID=rna-TanjilR_23567_La_Tanjil_v1.0; Name=rna-TanjilR_23567; organism=Lupinus angustifolius; type=CDS; length=1245bp; location=Sequence derived from: Chr_LG08-CM007368.1:23821626..23824856- (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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