rna-TanjilR_23546

Transcript Overview


Name	rna-TanjilR_23546
Unique Name	rna-TanjilR_23546_La_Tanjil_v1.0
Type	mRNA
Organism	Lupinus angustifolius (blue lupin)
Sequence length	573
Product	hypothetical protein

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr_LG08-CM007368.1	supercontig	Chr_LG08-CM007368.1:23977709..23978281 +	Lupinus angustifolius L. Tanjil genome v1.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Lupinus angustifolius L. Tanjil genome v1.0	2019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.0	2020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot	2020-01-28

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
ananL122	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananL254	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananL591	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananL607	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancaiR1271	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
anccR1392	Cajanus cajan Asha genome v1.0	Cajanus cajan
anccR1451	Cajanus cajan Asha genome v1.0	Cajanus cajan
anccR1457	Cajanus cajan Asha genome v1.0	Cajanus cajan
ancaR1096	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ancaR1146	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ancrR1285	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
ancrR1339	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
anpsR0947	Pisum sativum Cameor genome v1a	Pisum sativum
anpsR0973	Pisum sativum Cameor genome v1a	Pisum sativum
anpvR1275	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anpvR1286	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anvuR1084	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anvuR1110	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anasR1274	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anzwsR1079	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
anzwsR1118	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
anvfhR1126	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
antifR1117	Vicia faba cv. Tiffany genome v1.0	Vicia faba
anvfhR1179	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
antifR1165	Vicia faba cv. Tiffany genome v1.0	Vicia faba
anvrvR1072	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
anvrvR1089	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
anvuaR1036	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
anvuaR1065	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
anvssR1223	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
anvssR1240	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
ancanR1001	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
ancanR1045	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
anavjR1191	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
anavjR1240	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
anavjR1247	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
ancarR1060		Cicer arietinum
ancarR1105		Cicer arietinum
anccaR1056	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anccaR1080	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anvumR1276	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvumR1283	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvvaR1158	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
anvvaR1188	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
anvstR1266	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvasR1275	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvasR1283	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvstR1275	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvunR1045	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
anvunR1072	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
anpvfR1313	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
anpvfR1340	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
anpvfR1377	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris

Orthologs


Gene/Transcript	Assembly	Species
Cr_01143.1	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
Va05G051140.1	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
rna-XM_004486961.3	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
Vigan.07G051800.01	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
XM_058924216.1	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
rna-XM_014641010.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
Vfaba.Tiffany.R1.1g023400.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
Ca_00466.1	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
Ca_02607	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
Va03G001930.1	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
PvulFLAVERTChr08.1000083	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
Vigun05g257300.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
Psat5g283760.1	Pisum sativum Cameor genome v1a	Pisum sativum
Cc_v2.0_23565.1	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
jg43472.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
Psat05G0783500-T1	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
Vigst.07G038600.01	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
Vum_07G00411.1	Vigna umbellata FF25 genome v1.0	Vigna umbellata
Phvul.L004543.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
LR48_mrnaVigan05g188600	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
PvulFLAVERTChr05.928	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
evm.model.Chr05.2424	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
Vfaba.Hedin2.R1.1g035360.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
Vigun05g257300.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
rna-TanjilR_30240	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
rna-TanjilR_17194	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
rna-TanjilR_11314	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-TanjilG_23546	gene-TanjilG_23546_La_Tanjil_v1.0	Lupinus angustifolius	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_23546	rna-TanjilR_23546_La_Tanjil_v1.0-protein	Lupinus angustifolius	polypeptide
rna-TanjilR_23546_La_Tanjil_v1.0	rna-TanjilR_23546_La_Tanjil_v1.0	Lupinus angustifolius	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_23546_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:23977709..23978281	rna-TanjilR_23546_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:23977709..23978281	Lupinus angustifolius	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_23546_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:23977709..23978281	rna-TanjilR_23546_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:23977709..23978281	Lupinus angustifolius	CDS

Homology

The following BLAST results are available for this feature:

BLAST of rna-TanjilR_23546 vs.

BLAST of rna-TanjilR_23546 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0

Position :

Zoom :

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Match Name	E-value	Identity	Description

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Chr_LG08-CM007368.1:23977709..23978281+
coding sequence from alignment at Chr_LG08-CM007368.1:23977709..23978281+

mRNA sequence

>rna-TanjilR_23546_La_Tanjil_v1.0 ID=rna-TanjilR_23546_La_Tanjil_v1.0; Name=rna-TanjilR_23546; organism=Lupinus angustifolius; type=mRNA; length=573bp
ATGGTGCTGAAAACATTGGGAGAAGAAGGGGTAGAGTCAGAGTTGATGAG
GCTGCATAATCTAGCTGGTCCACCAAGGTTTCTTTTCACAATCAAAGAAG
AAACTAGAGAAGATTTGGAATCTGAAGATAGAAGCAGAAAAGGGTCAAGA
AGGAGGAGTTTGAGTGATATTATGGTAGCAATTAACACTCCTCTTCTTAG
CCCTGTTGCTTGTTCACCTTTGAAGTATTCTTTGGATAATCTTGATTATT
ATAAGCACCAAGGATTCAACCCTCTTTTTGAATCATCAGGAGAGTCAGAT
TTCAACAGATTTAGTTCTTCACCACCTCCAAAATTCAAGTTCTTGAGGGA
TGCAGAGGAGAAGTTGTATAGAAGAATAGTTGAAGAAGCTCAGATAAAGG
CACAGAAGAGTCATGAGTCTGTGACAGAAGAAAAAGACAGGACCTTGCTT
AGGTTCATTAACAGCATAGAGAAAGAGCAAAGAGAACTTCAACAACATTT
ACCACAGTTTCCTTCAACTACATCACAGGTTCTTCCCTTGGCATCTTCTC
CTACAACATTCAGAACAGTTTAA

protein sequence of rna-TanjilR_23546_La_Tanjil_v1.0

>rna-TanjilR_23546_La_Tanjil_v1.0 ID=rna-TanjilR_23546_La_Tanjil_v1.0; Name=rna-TanjilR_23546_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=190bp
MVLKTLGEEGVESELMRLHNLAGPPRFLFTIKEETREDLESEDRSRKGSR
RRSLSDIMVAINTPLLSPVACSPLKYSLDNLDYYKHQGFNPLFESSGESD
FNRFSSSPPPKFKFLRDAEEKLYRRIVEEAQIKAQKSHESVTEEKDRTLL
RFINSIEKEQRELQQHLPQFPSTTSQVLPLASSPTTFRTV

mRNA from alignment at Chr_LG08-CM007368.1:23977709..23978281+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna-TanjilR_23546_La_Tanjil_v1.0 ID=rna-TanjilR_23546_La_Tanjil_v1.0; Name=rna-TanjilR_23546; organism=Lupinus angustifolius; type=mRNA; length=573bp; location=Sequence derived from: Chr_LG08-CM007368.1:23977709..23978281+ (Lupinus angustifolius
ATGGTGCTGAAAACATTGGGAGAAGAAGGGGTAGAGTCAGAGTTGATGAG
GCTGCATAATCTAGCTGGTCCACCAAGGTTTCTTTTCACAATCAAAGAAG
AAACTAGAGAAGATTTGGAATCTGAAGATAGAAGCAGAAAAGGGTCAAGA
AGGAGGAGTTTGAGTGATATTATGGTAGCAATTAACACTCCTCTTCTTAG
CCCTGTTGCTTGTTCACCTTTGAAGTATTCTTTGGATAATCTTGATTATT
ATAAGCACCAAGGATTCAACCCTCTTTTTGAATCATCAGGAGAGTCAGAT
TTCAACAGATTTAGTTCTTCACCACCTCCAAAATTCAAGTTCTTGAGGGA
TGCAGAGGAGAAGTTGTATAGAAGAATAGTTGAAGAAGCTCAGATAAAGG
CACAGAAGAGTCATGAGTCTGTGACAGAAGAAAAAGACAGGACCTTGCTT
AGGTTCATTAACAGCATAGAGAAAGAGCAAAGAGAACTTCAACAACATTT
ACCACAGTTTCCTTCAACTACATCACAGGTTCTTCCCTTGGCATCTTCTC
CTACAACATTCAGAACAGTTTAA

Coding sequence (CDS) from alignment at Chr_LG08-CM007368.1:23977709..23978281+

>rna-TanjilR_23546_La_Tanjil_v1.0 ID=rna-TanjilR_23546_La_Tanjil_v1.0; Name=rna-TanjilR_23546; organism=Lupinus angustifolius; type=CDS; length=573bp; location=Sequence derived from: Chr_LG08-CM007368.1:23977709..23978281+ (Lupinus angustifolius
ATGGTGCTGAAAACATTGGGAGAAGAAGGGGTAGAGTCAGAGTTGATGAG
GCTGCATAATCTAGCTGGTCCACCAAGGTTTCTTTTCACAATCAAAGAAG
AAACTAGAGAAGATTTGGAATCTGAAGATAGAAGCAGAAAAGGGTCAAGA
AGGAGGAGTTTGAGTGATATTATGGTAGCAATTAACACTCCTCTTCTTAG
CCCTGTTGCTTGTTCACCTTTGAAGTATTCTTTGGATAATCTTGATTATT
ATAAGCACCAAGGATTCAACCCTCTTTTTGAATCATCAGGAGAGTCAGAT
TTCAACAGATTTAGTTCTTCACCACCTCCAAAATTCAAGTTCTTGAGGGA
TGCAGAGGAGAAGTTGTATAGAAGAATAGTTGAAGAAGCTCAGATAAAGG
CACAGAAGAGTCATGAGTCTGTGACAGAAGAAAAAGACAGGACCTTGCTT
AGGTTCATTAACAGCATAGAGAAAGAGCAAAGAGAACTTCAACAACATTT
ACCACAGTTTCCTTCAACTACATCACAGGTTCTTCCCTTGGCATCTTCTC
CTACAACATTCAGAACAGTTTAA

Search form

rna-TanjilR_23546