rna-TanjilR_23527

Transcript Overview
Namerna-TanjilR_23527
Unique Namerna-TanjilR_23527_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length504
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG08-CM007368.1supercontigChr_LG08-CM007368.1:24115741..24116244 +Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL254Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL595Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL607Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR1271Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR1332Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR1336Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR1340Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR1343Cicer arietinum ICC 4958 genome v2Cicer arietinum
anccR1392Cajanus cajan Asha genome v1.0Cajanus cajan
anccR1451Cajanus cajan Asha genome v1.0Cajanus cajan
ancaR1096Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR1148Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancrR1285Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ancrR1340Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0946Pisum sativum Cameor genome v1aPisum sativum
anpsR0947Pisum sativum Cameor genome v1aPisum sativum
anpsR0965Pisum sativum Cameor genome v1aPisum sativum
anpsR0973Pisum sativum Cameor genome v1aPisum sativum
anpvR1275Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR1286Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR1084Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR1110Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR1274Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR1079Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR1115Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anvrvR1072Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR1089Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvssR1223Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR1234Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR1240Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR1001Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR1047Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancarR1060Cicer arietinum
ancarR1105Cicer arietinum
anccaR1056Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR1080Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR1276Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR1283Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR1155Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR1188Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR1192Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvstR1266Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR1275Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvasR1283Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR1275Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvunR1045Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR1072Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR1313Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR1340Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
Ca_16271Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
rna-XM_014641792.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Ca_18574.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
PvulFLAVERTChr05.952Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vigun05g261400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
XM_058873956.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Ca_18588.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
LR48_mrnaVigan05g192600Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vigun05g261400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
jg8999.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-KK1_013919Cajanus cajan Asha genome v1.0Cajanus cajan
Cc_v2.0_23518.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vum_07G00372.1Vigna umbellata FF25 genome v1.0Vigna umbellata
rna-XM_004507095.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vigan.07G046900.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vigst.07G034800.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Phvul.L008443.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Cr_14513.2Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Psat07G0569300-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_23527gene-TanjilG_23527_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_23527rna-TanjilR_23527_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_23527_La_Tanjil_v1.0rna-TanjilR_23527_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_23527_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24115741..24115852rna-TanjilR_23527_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24115741..24115852Lupinus angustifoliusexon
rna-TanjilR_23527_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24116021..24116126rna-TanjilR_23527_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24116021..24116126Lupinus angustifoliusexon
rna-TanjilR_23527_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24116241..24116244rna-TanjilR_23527_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24116241..24116244Lupinus angustifoliusexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_23527_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24115741..24115852rna-TanjilR_23527_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24115741..24115852Lupinus angustifoliusCDS
rna-TanjilR_23527_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24116021..24116126rna-TanjilR_23527_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24116021..24116126Lupinus angustifoliusCDS
rna-TanjilR_23527_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24116241..24116244rna-TanjilR_23527_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24116241..24116244Lupinus angustifoliusCDS


Homology
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_23527 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.710.10coord: 5..73
e-value: 4.2E-19
score: 70.9
NoneNo IPR availableCDDcd18321BTB_POZ_EloCcoord: 6..73
e-value: 5.24948E-35
score: 111.911
IPR016073SKP1 component, POZ domainPFAMPF03931Skp1_POZcoord: 6..69
e-value: 1.3E-10
score: 41.3
IPR011333SKP1/BTB/POZ domain superfamilySUPERFAMILY54695POZ domaincoord: 6..71

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_23527_La_Tanjil_v1.0 ID=rna-TanjilR_23527_La_Tanjil_v1.0; Name=rna-TanjilR_23527; organism=Lupinus angustifolius; type=mRNA; length=504bp
atgaagaaggaagACACAGTGAAGCTTATCAGCGCCGAGGGTTTCGAATT
CGTGATCGATAAAGAAGCTGCCATGGTTTCTCAGACCATTCACAACATGC
TTACATCACCAGGTTCGTCtctttttatattagttatcaTCTATTTCATT
GATTCCTTTTTTCCCCTTTTTGGTTAGAACGATCAGGGTTAGGGTTATAT
TTTCCAGTGAAGTTGGAATGAAATTCGTACAGGGATTGGATTGATTGTTA
AGGTTTCGATTTTTGTTTTTTGCGTGATAGGGAGTTTCGCTGAAAGCCAG
CATGGGGAAGTGACATTTCCTGAGATCAGCACCACCATTCTCGAGAAGAT
TTGTCAGTATTTCTATTGGCATCTTCAATTTGCCAGGTATATCTACAATT
TGTTTCGCTAATGGTTATTCTTTTGGTATcttcctattttttttatttgc
ctATGTTTGTTAATTGACATTGTAATAGTATATGATGGTGGAATTTTTAG
GTAA
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protein sequence of rna-TanjilR_23527_La_Tanjil_v1.0

>rna-TanjilR_23527_La_Tanjil_v1.0 ID=rna-TanjilR_23527_La_Tanjil_v1.0; Name=rna-TanjilR_23527_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=73bp
MKKEDTVKLISAEGFEFVIDKEAAMVSQTIHNMLTSPGSFAESQHGEVTF
PEISTTILEKICQYFYWHLQFAR
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mRNA from alignment at Chr_LG08-CM007368.1:24115741..24116244+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_23527_La_Tanjil_v1.0 ID=rna-TanjilR_23527_La_Tanjil_v1.0; Name=rna-TanjilR_23527; organism=Lupinus angustifolius; type=mRNA; length=504bp; location=Sequence derived from: Chr_LG08-CM007368.1:24115741..24116244+ (Lupinus angustifolius
atgaagaaggaagACACAGTGAAGCTTATCAGCGCCGAGGGTTTCGAATT
CGTGATCGATAAAGAAGCTGCCATGGTTTCTCAGACCATTCACAACATGC
TTACATCACCAGGTTCGTCtctttttatattagttatcaTCTATTTCATT
GATTCCTTTTTTCCCCTTTTTGGTTAGAACGATCAGGGTTAGGGTTATAT
TTTCCAGTGAAGTTGGAATGAAATTCGTACAGGGATTGGATTGATTGTTA
AGGTTTCGATTTTTGTTTTTTGCGTGATAGGGAGTTTCGCTGAAAGCCAG
CATGGGGAAGTGACATTTCCTGAGATCAGCACCACCATTCTCGAGAAGAT
TTGTCAGTATTTCTATTGGCATCTTCAATTTGCCAGGTATATCTACAATT
TGTTTCGCTAATGGTTATTCTTTTGGTATcttcctattttttttatttgc
ctATGTTTGTTAATTGACATTGTAATAGTATATGATGGTGGAATTTTTAG
GTAA
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Coding sequence (CDS) from alignment at Chr_LG08-CM007368.1:24115741..24116244+

>rna-TanjilR_23527_La_Tanjil_v1.0 ID=rna-TanjilR_23527_La_Tanjil_v1.0; Name=rna-TanjilR_23527; organism=Lupinus angustifolius; type=CDS; length=222bp; location=Sequence derived from: Chr_LG08-CM007368.1:24115741..24116244+ (Lupinus angustifolius
atgaagaaggaagACACAGTGAAGCTTATCAGCGCCGAGGGTTTCGAATT
CGTGATCGATAAAGAAGCTGCCATGGTTTCTCAGACCATTCACAACATGC
TTACATCACCAGGGAGTTTCGCTGAAAGCCAGCATGGGGAAGTGACATTT
CCTGAGATCAGCACCACCATTCTCGAGAAGATTTGTCAGTATTTCTATTG
GCATCTTCAATTTGCCAGGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR016073Skp1_comp_POZ
IPR011333SKP1/BTB/POZ_sf
Vocabulary: Biological Process
TermDefinition
GO:0006511ubiquitin-dependent protein catabolic process