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Transcript Overview
Name | rna-TanjilR_23515 |
Unique Name | rna-TanjilR_23515_La_Tanjil_v1.0 |
Type | mRNA |
Organism | Lupinus angustifolius (blue lupin) |
Sequence length | 2293 |
Product | hypothetical protein |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_23515 | rna-TanjilR_23515_La_Tanjil_v1.0-protein | Lupinus angustifolius | polypeptide |
rna-TanjilR_23515_La_Tanjil_v1.0 | rna-TanjilR_23515_La_Tanjil_v1.0 | Lupinus angustifolius | polypeptide |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_23515_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24178892..24179032 | rna-TanjilR_23515_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24178892..24179032 | Lupinus angustifolius | CDS |
rna-TanjilR_23515_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24178421..24178652 | rna-TanjilR_23515_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24178421..24178652 | Lupinus angustifolius | CDS |
rna-TanjilR_23515_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24177947..24177984 | rna-TanjilR_23515_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24177947..24177984 | Lupinus angustifolius | CDS |
rna-TanjilR_23515_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24177768..24177812 | rna-TanjilR_23515_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24177768..24177812 | Lupinus angustifolius | CDS |
rna-TanjilR_23515_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24177372..24177499 | rna-TanjilR_23515_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24177372..24177499 | Lupinus angustifolius | CDS |
rna-TanjilR_23515_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24176740..24176818 | rna-TanjilR_23515_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24176740..24176818 | Lupinus angustifolius | CDS |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_23515_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24178892..24179032 | rna-TanjilR_23515_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24178892..24179032 | Lupinus angustifolius | exon |
rna-TanjilR_23515_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24178421..24178652 | rna-TanjilR_23515_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24178421..24178652 | Lupinus angustifolius | exon |
rna-TanjilR_23515_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24177947..24177984 | rna-TanjilR_23515_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24177947..24177984 | Lupinus angustifolius | exon |
rna-TanjilR_23515_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24177768..24177812 | rna-TanjilR_23515_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24177768..24177812 | Lupinus angustifolius | exon |
rna-TanjilR_23515_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24177372..24177499 | rna-TanjilR_23515_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24177372..24177499 | Lupinus angustifolius | exon |
rna-TanjilR_23515_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24176740..24176818 | rna-TanjilR_23515_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24176740..24176818 | Lupinus angustifolius | exon |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 96..120 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 76..121 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_23515_La_Tanjil_v1.0 ID=rna-TanjilR_23515_La_Tanjil_v1.0; Name=rna-TanjilR_23515; organism=Lupinus angustifolius; type=mRNA; length=2293bp ATGAGTTGGGGCCCAAATATGGAGGTGCATTACAATAACACCAGCTATCC CTATAATACTGCAGGGAGCTTTATTGAATATTTTGAAGGTCTTACCTATG AACATGTCAACTTCATTTTTTCTGGTGCATCACATGCTCAGGTACCTGAA ATGACTGTAATATATATTCTGTTTAAGACATTTTTTCGCTTTGTTTCGTT CGACATTGTCGCACTTCATTTCTTGTTTTCTTCTTGTAGATCTGTTGGAA AAGACTGTTCTCAGTTTCATATTTTATCAGCAAATTTTTAATTGTTCTGT TGTTATTAATTGAAGACTACTAGAAATGGCTCCTGATATTCAAGTATAAA TGTTAAATAAAATCCCATTTGTATATGCAGGAGAGTTCCTACCCTTCAGC TTCAAGCTTTTACAAGTTTGGACTATCTGAAGTTGACAGCAATTCATACT ATCGTTACAGTCATGGTGATGACTTAAGCCATCATCAATCACCAGTGGAT GACTATAGGAGGCCTTTGGGAAACTCACCGGTAGTTAGTGAACAGACGAC AACAGCAAGTACAGAATGGGGAGAAAGTGTAAACACTGATACACGAGACA ATTCTATTGAGTGTAAGTTCTTGAGTTTCATTTGAAGATGATTCTCCTAA TATATAAAAGGGGCTCAGATTAGCCTCTGAAGCATTTCTACAATCTAAAA ACAAATGCCCTGTCAGTGTCCGGCACATCATAAGTAGTTAGTTAGTTAGT TACATTTTGGTGATATCTGGGTGACTAAATGAACTGTCGGGTATGTGTGA GTTCCTTGAAAGAGCATTGCTGCTCACCTCAGACCTCTGCTCTTTGAGTT AAAGGATTGTTGACTCTGTTATGAGCATCAGTGTATCACAATGTTTGAAA AACTGCATTTAGAAAGTCAGGTATCTGTTTCAGTCATTAAAGTCTATCCA AACCCCCTTTTGCAGTGCTGTCATTTGGTAGTTTAGTCTTTTTACCCTGC ATATAAAATGTTTGCTCGTGATTTAGATATCTGTTTATTTTCTTTCAGGC CCACGAAGACATCATAGTAATTCCAATGATTATCAGGTATTTGCCTTCAA AAGTTGCATAATATAGTCAAATGCAATGAACATCTAGGAAGTTTGTGTAG TTACCTTTACCCATTTCATCAGTAGAAGCAGAGTAAAAGATTATCTTAGC CTTTTTTCTAATTTTTGCAGGTCATTTGGCAAGACAGTATTGATCCTGAT GACATGACCTATGAGGTTAGATTGGAGCCTTAGATACCATCTCTTCTAGG GCTTTATAAGATTTGAGTCTTAGATACCACTTCTTCTAGGGCTTTATATA TTTCTTCCAGTCTTCCTTAAATTACAGATACTATATATCTGATTTCCTGA TAGCATTGCGTCAATCTTCTAGATATTAACTGTCGAGTACCGATTAATTA AAGTTTAAAGTATATAGCCCCTTATATTTGTGATGATTCCCTTGTAATTC CCCTCATTAATATCATATTGTTGTTTATTGCAGGAACTACTTGAATTAAG CGAGGCTGTCGGAACTCAAAGCCGTGGTCTCACCCAAGAACAGATTTCCT TGCTTCCAGTTTCAAAGTACAAGTGTGGGTTCTTCTTGAGGAAAAAGTCA CGGGATGAGAGGTAACATTTAGGTTTTTGCACTGTGTTTTAATACAATTC TTGCTTTTCTTATGCATTCAGCCATTACATTTGAAAAAATTCATGCATCT AACTTTAGAAATCCTTATTTCTGCTTTTATTCTTCATTGACTAGTTTCTA ACAAACAATCCTGCTTTCTTCCGTGTGTCCAAATTGACCTTGGAGCTTAG AGATTGCTGCAATTGAGCTTATTTTTTTGGGTTAATTTTAATCACTGATA TTATGTCTTCTTTAATTGTCCAAACACTACTTTGTATAGCTTAAATGCAA TGTATTATGTGGTTAAGATGAATAAGGTGCATATCTCACAGATGAAGATT ATATATCAGTTAGTAAATGACATGGGAAGGTAGATTCTTATGAACTAAGA AATGCATAGATTATCAATGAACACTTTAACCATTGATCATTGCCCTAAAA TCTAATTCGTCCTCTTTCACATAATATGTAACTAAGAAAAAAATGTGGAC CCAAACGAACGAACTTTGAAGATTTTATGTTTCTTTCCTTAATCTGGAAC TTGGAAACGTCCAGATGGGTATTGCACTTCCAAACCTTGCCTGTTATTTT ATGGCAGAAGATCAAATATTTGGATCTTGCCTCCTCTTCCTAA back to topprotein sequence of rna-TanjilR_23515_La_Tanjil_v1.0 >rna-TanjilR_23515_La_Tanjil_v1.0 ID=rna-TanjilR_23515_La_Tanjil_v1.0; Name=rna-TanjilR_23515_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=220bp MSWGPNMEVHYNNTSYPYNTAGSFIEYFEGLTYEHVNFIFSGASHAQESS YPSASSFYKFGLSEVDSNSYYRYSHGDDLSHHQSPVDDYRRPLGNSPVVS EQTTTASTEWGESVNTDTRDNSIECPRRHHSNSNDYQVIWQDSIDPDDMT YEELLELSEAVGTQSRGLTQEQISLLPVSKYKCGFFLRKKSRDERWVLHF QTLPVILWQKIKYLDLASSS back to topmRNA from alignment at Chr_LG08-CM007368.1:24176740..24179032- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >rna-TanjilR_23515_La_Tanjil_v1.0 ID=rna-TanjilR_23515_La_Tanjil_v1.0; Name=rna-TanjilR_23515; organism=Lupinus angustifolius; type=mRNA; length=2293bp; location=Sequence derived from: Chr_LG08-CM007368.1:24176740..24179032- (Lupinus angustifolius ATGAGTTGGGGCCCAAATATGGAGGTGCATTACAATAACACCAGCTATCC
CTATAATACTGCAGGGAGCTTTATTGAATATTTTGAAGGTCTTACCTATG
AACATGTCAACTTCATTTTTTCTGGTGCATCACATGCTCAGGTACCTGAA
ATGACTGTAATATATATTCTGTTTAAGACATTTTTTCGCTTTGTTTCGTT
CGACATTGTCGCACTTCATTTCTTGTTTTCTTCTTGTAGATCTGTTGGAA
AAGACTGTTCTCAGTTTCATATTTTATCAGCAAATTTTTAATTGTTCTGT
TGTTATTAATTGAAGACTACTAGAAATGGCTCCTGATATTCAAGTATAAA
TGTTAAATAAAATCCCATTTGTATATGCAGGAGAGTTCCTACCCTTCAGC
TTCAAGCTTTTACAAGTTTGGACTATCTGAAGTTGACAGCAATTCATACT
ATCGTTACAGTCATGGTGATGACTTAAGCCATCATCAATCACCAGTGGAT
GACTATAGGAGGCCTTTGGGAAACTCACCGGTAGTTAGTGAACAGACGAC
AACAGCAAGTACAGAATGGGGAGAAAGTGTAAACACTGATACACGAGACA
ATTCTATTGAGTGTAAGTTCTTGAGTTTCATTTGAAGATGATTCTCCTAA
TATATAAAAGGGGCTCAGATTAGCCTCTGAAGCATTTCTACAATCTAAAA
ACAAATGCCCTGTCAGTGTCCGGCACATCATAAGTAGTTAGTTAGTTAGT
TACATTTTGGTGATATCTGGGTGACTAAATGAACTGTCGGGTATGTGTGA
GTTCCTTGAAAGAGCATTGCTGCTCACCTCAGACCTCTGCTCTTTGAGTT
AAAGGATTGTTGACTCTGTTATGAGCATCAGTGTATCACAATGTTTGAAA
AACTGCATTTAGAAAGTCAGGTATCTGTTTCAGTCATTAAAGTCTATCCA
AACCCCCTTTTGCAGTGCTGTCATTTGGTAGTTTAGTCTTTTTACCCTGC
ATATAAAATGTTTGCTCGTGATTTAGATATCTGTTTATTTTCTTTCAGGC
CCACGAAGACATCATAGTAATTCCAATGATTATCAGGTATTTGCCTTCAA
AAGTTGCATAATATAGTCAAATGCAATGAACATCTAGGAAGTTTGTGTAG
TTACCTTTACCCATTTCATCAGTAGAAGCAGAGTAAAAGATTATCTTAGC
CTTTTTTCTAATTTTTGCAGGTCATTTGGCAAGACAGTATTGATCCTGAT
GACATGACCTATGAGGTTAGATTGGAGCCTTAGATACCATCTCTTCTAGG
GCTTTATAAGATTTGAGTCTTAGATACCACTTCTTCTAGGGCTTTATATA
TTTCTTCCAGTCTTCCTTAAATTACAGATACTATATATCTGATTTCCTGA
TAGCATTGCGTCAATCTTCTAGATATTAACTGTCGAGTACCGATTAATTA
AAGTTTAAAGTATATAGCCCCTTATATTTGTGATGATTCCCTTGTAATTC
CCCTCATTAATATCATATTGTTGTTTATTGCAGGAACTACTTGAATTAAG
CGAGGCTGTCGGAACTCAAAGCCGTGGTCTCACCCAAGAACAGATTTCCT
TGCTTCCAGTTTCAAAGTACAAGTGTGGGTTCTTCTTGAGGAAAAAGTCA
CGGGATGAGAGGTAACATTTAGGTTTTTGCACTGTGTTTTAATACAATTC
TTGCTTTTCTTATGCATTCAGCCATTACATTTGAAAAAATTCATGCATCT
AACTTTAGAAATCCTTATTTCTGCTTTTATTCTTCATTGACTAGTTTCTA
ACAAACAATCCTGCTTTCTTCCGTGTGTCCAAATTGACCTTGGAGCTTAG
AGATTGCTGCAATTGAGCTTATTTTTTTGGGTTAATTTTAATCACTGATA
TTATGTCTTCTTTAATTGTCCAAACACTACTTTGTATAGCTTAAATGCAA
TGTATTATGTGGTTAAGATGAATAAGGTGCATATCTCACAGATGAAGATT
ATATATCAGTTAGTAAATGACATGGGAAGGTAGATTCTTATGAACTAAGA
AATGCATAGATTATCAATGAACACTTTAACCATTGATCATTGCCCTAAAA
TCTAATTCGTCCTCTTTCACATAATATGTAACTAAGAAAAAAATGTGGAC
CCAAACGAACGAACTTTGAAGATTTTATGTTTCTTTCCTTAATCTGGAAC
TTGGAAACGTCCAGATGGGTATTGCACTTCCAAACCTTGCCTGTTATTTT
ATGGCAGAAGATCAAATATTTGGATCTTGCCTCCTCTTCCTAA back to topCoding sequence (CDS) from alignment at Chr_LG08-CM007368.1:24176740..24179032- >rna-TanjilR_23515_La_Tanjil_v1.0 ID=rna-TanjilR_23515_La_Tanjil_v1.0; Name=rna-TanjilR_23515; organism=Lupinus angustifolius; type=CDS; length=663bp; location=Sequence derived from: Chr_LG08-CM007368.1:24176740..24179032- (Lupinus angustifolius ATGAGTTGGGGCCCAAATATGGAGGTGCATTACAATAACACCAGCTATCC CTATAATACTGCAGGGAGCTTTATTGAATATTTTGAAGGTCTTACCTATG AACATGTCAACTTCATTTTTTCTGGTGCATCACATGCTCAGGAGAGTTCC TACCCTTCAGCTTCAAGCTTTTACAAGTTTGGACTATCTGAAGTTGACAG CAATTCATACTATCGTTACAGTCATGGTGATGACTTAAGCCATCATCAAT CACCAGTGGATGACTATAGGAGGCCTTTGGGAAACTCACCGGTAGTTAGT GAACAGACGACAACAGCAAGTACAGAATGGGGAGAAAGTGTAAACACTGA TACACGAGACAATTCTATTGAGTGCCCACGAAGACATCATAGTAATTCCA ATGATTATCAGGTCATTTGGCAAGACAGTATTGATCCTGATGACATGACC TATGAGGAACTACTTGAATTAAGCGAGGCTGTCGGAACTCAAAGCCGTGG TCTCACCCAAGAACAGATTTCCTTGCTTCCAGTTTCAAAGTACAAGTGTG GGTTCTTCTTGAGGAAAAAGTCACGGGATGAGAGATGGGTATTGCACTTC CAAACCTTGCCTGTTATTTTATGGCAGAAGATCAAATATTTGGATCTTGC CTCCTCTTCCTAA back to top
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