Homology
BLAST of rna-TanjilR_23412 vs. DB:Swiss
Match:
ATD1A_DANRE (ATPase family AAA domain-containing protein 1-A OS=Danio rerio OX=7955 GN=atad1a PE=2 SV=2)
HSP 1 Score: 73.1738 bits (178), Expect = 1.934e-11
Identity = 31/66 (46.97%), Postives = 49/66 (74.24%), Query Frame = 3
Query: 10779 VDSLLGARGGALEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRRYVVG 10976
+DS L R +++HEAT M+ +FM+ WDGL + EN +++++GATNRP D+D A++RR+P + VG
Sbjct: 197 IDSFLRNRS-SMDHEATAMMKAQFMSLWDGLDTGENSQVMVMGATNRPQDVDAAILRRMPTAFHVG 261
BLAST of rna-TanjilR_23412 vs. DB:Swiss
Match:
ATAD1_XENTR (ATPase family AAA domain-containing protein 1 OS=Xenopus tropicalis OX=8364 GN=atad1 PE=2 SV=2)
HSP 1 Score: 71.2478 bits (173), Expect = 6.271e-11
Identity = 30/63 (47.62%), Postives = 47/63 (74.60%), Query Frame = 3
Query: 10779 VDSLLGARGGALEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRRY 10967
+DS L +R + +HEAT M+ +FM+ WDGL + N +++++GATNRP DLD A++RR+P R+
Sbjct: 194 IDSFLRSRSSS-DHEATAMMKAQFMSLWDGLDTDFNCQVIVMGATNRPQDLDTAIMRRMPTRF 255
BLAST of rna-TanjilR_23412 vs. DB:Swiss
Match:
ATD1B_DANRE (ATPase family AAA domain-containing protein 1-B OS=Danio rerio OX=7955 GN=atad1b PE=2 SV=2)
HSP 1 Score: 71.2478 bits (173), Expect = 6.432e-11
Identity = 31/63 (49.21%), Postives = 46/63 (73.02%), Query Frame = 3
Query: 10779 VDSLLGARGGALEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRRY 10967
+DS L R + +HEAT M+ +FM+ WDGL + N +++I+GATNRP DLD A++RR+P R+
Sbjct: 198 IDSFLRNRSSS-DHEATAMMKAQFMSLWDGLDTDYNCQVIIMGATNRPQDLDSAILRRMPTRF 259
BLAST of rna-TanjilR_23412 vs. DB:Swiss
Match:
ATAD1_RAT (ATPase family AAA domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Atad1 PE=1 SV=1)
HSP 1 Score: 69.707 bits (169), Expect = 1.820e-10
Identity = 29/63 (46.03%), Postives = 46/63 (73.02%), Query Frame = 3
Query: 10779 VDSLLGARGGALEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRRY 10967
+DS L R + +HEAT M+ +FM+ WDGL + + +++++GATNRP DLD A++RR+P R+
Sbjct: 194 IDSFLRNRSSS-DHEATAMMKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMRRMPTRF 255
BLAST of rna-TanjilR_23412 vs. DB:Swiss
Match:
ATAD1_BOVIN (ATPase family AAA domain-containing protein 1 OS=Bos taurus OX=9913 GN=ATAD1 PE=2 SV=2)
HSP 1 Score: 69.707 bits (169), Expect = 1.820e-10
Identity = 29/66 (43.94%), Postives = 47/66 (71.21%), Query Frame = 3
Query: 10779 VDSLLGARGGALEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRRYVVG 10976
+DS L R + +HEAT M+ +FM+ WDGL + + +++++GATNRP DLD A++RR+P R+ +
Sbjct: 194 IDSFLRNRSSS-DHEATAMMKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMRRMPTRFHIN 258
BLAST of rna-TanjilR_23412 vs. DB:Swiss
Match:
ATAD1_MOUSE (ATPase family AAA domain-containing protein 1 OS=Mus musculus OX=10090 GN=Atad1 PE=1 SV=1)
HSP 1 Score: 69.707 bits (169), Expect = 1.836e-10
Identity = 29/66 (43.94%), Postives = 47/66 (71.21%), Query Frame = 3
Query: 10779 VDSLLGARGGALEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRRYVVG 10976
+DS L R + +HEAT M+ +FM+ WDGL + + +++++GATNRP DLD A++RR+P R+ +
Sbjct: 194 IDSFLRNRSSS-DHEATAMMKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMRRMPTRFHIN 258
BLAST of rna-TanjilR_23412 vs. DB:Swiss
Match:
ATAD1_HUMAN (ATPase family AAA domain-containing protein 1 OS=Homo sapiens OX=9606 GN=ATAD1 PE=1 SV=1)
HSP 1 Score: 69.707 bits (169), Expect = 1.836e-10
Identity = 29/66 (43.94%), Postives = 47/66 (71.21%), Query Frame = 3
Query: 10779 VDSLLGARGGALEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRRYVVG 10976
+DS L R + +HEAT M+ +FM+ WDGL + + +++++GATNRP DLD A++RR+P R+ +
Sbjct: 194 IDSFLRNRSSS-DHEATAMMKAQFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMRRMPTRFHIN 258
BLAST of rna-TanjilR_23412 vs. DB:Swiss
Match:
SPAST_CAEBR (Probable spastin homolog spas-1 OS=Caenorhabditis briggsae OX=6238 GN=spas-1 PE=3 SV=2)
HSP 1 Score: 70.4774 bits (171), Expect = 2.462e-10
Identity = 31/66 (46.97%), Postives = 47/66 (71.21%), Query Frame = 3
Query: 10779 VDSLLGARGGALEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRRYVVG 10976
+DS+L R + E +RRM+ EF+ +DG S + RIL++GATNRP++LDDAV+RR P+R ++
Sbjct: 370 IDSILCERSEK-DAEVSRRMKTEFLVQFDGATSSPDDRILVIGATNRPYELDDAVLRRFPKRIMLN 434
BLAST of rna-TanjilR_23412 vs. DB:Swiss
Match:
SPAST_IXOSC (Spastin OS=Ixodes scapularis OX=6945 GN=spas PE=3 SV=1)
HSP 1 Score: 70.4774 bits (171), Expect = 2.949e-10
Identity = 34/65 (52.31%), Postives = 46/65 (70.77%), Query Frame = 3
Query: 10779 VDSLLGARGGALEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRRYVV 10973
VDSLL R EHEATRR++ EF+ +DGL + +R+L++GATNRP +LDDA +RR +R V
Sbjct: 475 VDSLLSERKDN-EHEATRRLKTEFLVEFDGLHTGSEERVLVMGATNRPQELDDAALRRFTKRVYV 538
BLAST of rna-TanjilR_23412 vs. DB:Swiss
Match:
SPAST_DICDI (Spastin OS=Dictyostelium discoideum OX=44689 GN=DDB_G0287165 PE=3 SV=1)
HSP 1 Score: 69.707 bits (169), Expect = 4.878e-10
Identity = 33/66 (50.00%), Postives = 47/66 (71.21%), Query Frame = 3
Query: 10779 VDSLLGARGGALEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRRYVVG 10976
+DSLL R E EA+RR++ E + +DG R+ ++R+L++GATNRP DLDDA +RRL +R VG
Sbjct: 485 IDSLLTERSSN-ESEASRRLKTEILVQFDGARTNGDERVLVMGATNRPEDLDDAALRRLVKRIYVG 549
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_23412 vs. DB:Swiss
Analysis Date: 2020-01-28 (
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot )
Total hits: 10
1000 2000 3000 4000 5000 6000 7000 8000 9000 10000 11000 12000 13000 Expect = 1.93e-11 / Id = 46.97 Expect = 6.27e-11 / Id = 47.62 Expect = 6.43e-11 / Id = 49.21 Expect = 1.82e-10 / Id = 46.03 Expect = 1.82e-10 / Id = 43.94 Expect = 1.84e-10 / Id = 43.94 Expect = 1.84e-10 / Id = 43.94 Expect = 2.46e-10 / Id = 46.97 Expect = 2.95e-10 / Id = 52.31 Expect = 4.88e-10 / Id = 50.00 Sequence ATD1A_DANRE ATAD1_XENTR ATD1B_DANRE ATAD1_RAT ATAD1_BOVIN ATAD1_MOUSE ATAD1_HUMAN SPAST_CAEBR SPAST_IXOSC SPAST_DICDI
Match Name E-value Identity Description
ATD1A_DANRE 1.934e-11 46.97 ATPase family AAA domain-containing protein 1-A OS... [more] ATAD1_XENTR 6.271e-11 47.62 ATPase family AAA domain-containing protein 1 OS=X... [more] ATD1B_DANRE 6.432e-11 49.21 ATPase family AAA domain-containing protein 1-B OS... [more] ATAD1_RAT 1.820e-10 46.03 ATPase family AAA domain-containing protein 1 OS=R... [more] ATAD1_BOVIN 1.820e-10 43.94 ATPase family AAA domain-containing protein 1 OS=B... [more] ATAD1_MOUSE 1.836e-10 43.94 ATPase family AAA domain-containing protein 1 OS=M... [more] ATAD1_HUMAN 1.836e-10 43.94 ATPase family AAA domain-containing protein 1 OS=H... [more] SPAST_CAEBR 2.462e-10 46.97 Probable spastin homolog spas-1 OS=Caenorhabditis ... [more] SPAST_IXOSC 2.949e-10 52.31 Spastin OS=Ixodes scapularis OX=6945 GN=spas PE=3 ... [more] SPAST_DICDI 4.878e-10 50.00 Spastin OS=Dictyostelium discoideum OX=44689 GN=DD... [more]
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Sequences
The
following sequences are available for this feature:
mRNA sequence
>rna-TanjilR_23412_La_Tanjil_v1.0 ID=rna-TanjilR_23412_La_Tanjil_v1.0; Name=rna-TanjilR_23412; organism=Lupinus angustifolius; type=mRNA; length=13027bp back to top protein sequence of rna-TanjilR_23412_La_Tanjil_v1.0
>rna-TanjilR_23412_La_Tanjil_v1.0 ID=rna-TanjilR_23412_La_Tanjil_v1.0; Name=rna-TanjilR_23412_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=1011bp back to top mRNA from alignment at Chr_LG08-CM007368.1:24885328..24898354-
Legend: CDS exon polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_23412_La_Tanjil_v1.0 ID=rna-TanjilR_23412_La_Tanjil_v1.0; Name=rna-TanjilR_23412; organism=Lupinus angustifolius; type=mRNA; length=13027bp; location=Sequence derived from: Chr_LG08-CM007368.1:24885328..24898354- (Lupinus angustifoliusATGTACTTTAGGAGAATACAGGCCAGAGACCGGAGATGGGATTTAGTGTT
TCAGCCATTGAAATACTTTTTCAGGCCAAGATTCTCTGATCATGCATGCT
TTCAATCTTCGTCTCCCAAGACCACCATTAAAGAATGCACATCACATGGT
AGTATCACCAGAAGACGTCTTTTAGGTTCAGATTCATCGAAGTGTGCTTT
GTCCACATATAGTTGTACTACTTTGGACAAAAGGCTTAGTTTATGGAATA
CACATCTGCGTGCTTATAGTTCTGAAAGTGATGGAAGAAATGCAAGTGAG
GATAAGCATGTACATGTTCTTGATAAGGGACAGAATCAACTAGATATGTC
GGGGAAAAATCTTAAGTGCTGCAATGCACATGCTCAAATAGGAGAACAAG
ATCAAGAGGAATGGCTTAATAATGAGAAGCTTTCCATAGAAAGTAAGAAG
AGAGAATCGCCATTTTTGACAAGAAGGGATAAGTTCAAAAATGAGTTTCT
CAGAAGAATTGTTCCATGGGAGAAGATAAACATTTCATGGGATACATTCC
CTTATCACATTAA TGAACATACAAAAAATCTTCTGGTGGAATGTGCTGC
TTCCCATTTGAGACACAATAAGTTTGCTTCGTCTTTTGGCACTCGCCTCA
CATCTTCAAGTGGGAGAATATTGCTTCAGAGCATTCCCG GTACTGA
GCTCTATCGTGAGAGAGTAGTTAGAGCTCTTGCACAAGATTTACAAGTTC
CTTTGTTGGTGCTTGATAGTAGCATCATTGCTCCTTAT GATATTGATGATGATTCATCA
GACTACGAGTCTGATGATGATAATGCAGACTCGGGAGAAGAAGGTTCAAT
AGAGTCAGAGTCTGAGGATGACAATGATGCTAGCAATGAAGAAGAGTGGG
CTAGCAGTACCGAGGTAAAGTCAGATGCAAGTGATAATGAGGATGCACTT
GCACATGCTGAAGCAGCTCTTAAGAAGGTTAAAGCAGCTGTTCAGAAACT
TGTTCCTTACAACATTGAAGAATTTGAGAAG ATTGCGTCCGTAGGAT
CGGAGAGTTCTGATTCATCTAAGTCTAGTGATGCCAAGTCTTCTGATAAA
TCTGGACGCCAGCTAAGAAAAG GTGACCGTG
TAAAGTACATCGGGCCATCTGTTCAAGTTACAGCTGATGACAG GGTTGTACTGGGGAAGATACCGACATCTGATGGTCCAACTAAAGCTTA
TACTATTATACATGGCAG GCCTTTAACTAATGGTCAGAGAGGAGAGGTATATG
AAGTGAATGAAGATCGAGTTGCTGTCATCTTGGATAATAATGAAAGCAGT
GCCAATGAGGGTGAGGTGGAGAACCTTAATGACGAGCATACAAAACCAGC
AATTTATTGGATACATG TTAAGGACATCGAGAATGATCTTGATGCACAAGCAC
AGGATTGCTACATAGCAGTGGAGGCTTTATGTGAG GTTCTGAAATGCAGAC
AACCTCTTATTGTCTATTTTCCGGACAGTTCACAGTGGTTGCATAAATCA
GTTCCTAAGTCATACCGAAATGAGTTTTTTAATAAGGTTGAAGAGATGTT
TGACAAGTTATCTGGCCCCGTAGTGTTGATTTGTGGGGAGAACAAAGTTC
AGTCAGGATCAAAGGAGAAAGAACAATTT ACAATGATACTTCCAAATTTTGGACGTGCTTCT
AAGCTG CCTTTGTCTCTGAAACGATTGACTGATGGATTTAAAGGGGCCAAG
AGCTCGGAAGATGACGATGTCCAAAAGCTTTTCTCTAATGTTTTGTGTGT
ACATCCACCTAAG GATG
ATAACCTTCTGGCAACATTTAAGAAACAGCTTGATGAAGACAGGAAATTT
GTGATTTCACGTAGCAATTTGAATGAACTAAGGAAG GTTCTTGAAGAGCATCAGTTATCAT
GCACAGACCTATTGCATGTAAATACCGATGATGTCATCTTGACAAAGCAA
AGTATGAAACCGCTTCCAGATTTTAAGACTATTAACCTTATTCTTACATA
TGCACTTGTCCTTTCTTCCTCAACCATTGTATCTCTACCTTCTAATTTGC
ACTCTAGCGTCATGTCATGTCCAAACAATGTTTTTACATCATTTATTCTG
TTTTCAGAAGCTGAAAAGGTTGTAGGCTGGGCAAAAAATCATTACTTGTC
ATCGTGCTTGCTTCCTTCTGTTAAAGGAGAACGATTGTGCCTCCCCCGTG
AAAG GCCAGAGCTTTTCTCTCGTGGAAACTTGTTGCGG CCCTGCAAAGGAATATTA
CTCTTTGGTCCTCCTGGAACCGGGAAAACTCTACTGGCCAAGGCACTTGC
AACAGAAGCTGGTGCAAATTTTATCAGCATAACTGGTTCAACTCTAACTT
CAAAG TGGTTTGGAGA
TGCTGAAAAACTAACTAAAGCCCTTTTCTCCTTTGCCAGCAAGCTAGCTC
CTGTCATTATATTTGTTGATGAA GTTGACAGTTTGCTTGGTGCTC
GAGGTGGTGCCCTTGAACACGAGGCCACTAGAAGAATGAGGAATGAGTTC
ATGGCAGCTTGGGATGGATTGAGGTCAAAAGAAAACCAAAGAATCCTCAT
TCTTGGTGCAACAAACAGACCATTCGACCTTGATGATGCTGTTATTCGTC
GTTTACCAAGAAG GATATATGTTGATTTACCAGATGCT
GAAAATCGAATGAAGATTTTGAGAATAGTCCTTGCACAAGAAAATTTGGT
TCCCAGTTTTGAGTATGACAAACTTGCTAAGTTGACTGAAGGTTACTCTG
GCAGTGACTTGAAG AAC
CTTTGCATTGCCGCTGCATACAGGCCAGTTCAAGAGCTCATAGAGGAAGA
GAAAAAG GGAATCAGTAATGGTACACCTTCAGTATTAAGGCCTCTTAA
TGTAGATGATTTTGTTGAGTCAAAAGCAAAG GTGGGGCCTTCAGTTGCATATGATGCAACAAGCATGA
ATGAGTTGAGGAAGTGGAATGATATGTATGGAGAAGATGGTAGTAGGACA
AAATCACCATTTGGATTTGGGAGCTGA back to top Coding sequence (CDS) from alignment at Chr_LG08-CM007368.1:24885328..24898354-
>rna-TanjilR_23412_La_Tanjil_v1.0 ID=rna-TanjilR_23412_La_Tanjil_v1.0; Name=rna-TanjilR_23412; organism=Lupinus angustifolius; type=CDS; length=3036bp; location=Sequence derived from: Chr_LG08-CM007368.1:24885328..24898354- (Lupinus angustifolius back to top
