rna-TanjilR_23401
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_23401 vs. DB:Swiss
Match: CYPH_LUPLU (Peptidyl-prolyl cis-trans isomerase OS=Lupinus luteus OX=3873 PE=2 SV=1) HSP 1 Score: 321.242 bits (822), Expect = 6.386e-113 Identity = 165/172 (95.93%), Postives = 170/172 (98.84%), Query Frame = 1 Query: 1 MSNPKVFFDMAIGGSPAGRIVMELYADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSSFHRVIPNFMCQXXXXXXXXXXXXESIYGAKFADENFIKKHTGPGILSMANAGAGTNGSQFFICTEKTEWLDGKHVVFGKVVEGLNVVRDIEKVGSGSGKTSRPVTIADCGQLS 516 MSNPKVFFDMAI G+PAGRIVMELYADTTPRTAENFRALCTGEKGVGRSGKPLHYKGS+FHRVIPNFMCQGGDFTAGNGTG ESIYGAKFADENFIK+HTGPGILSMANAGAGTNGSQFFICTEKTEWLDGKHVVFGKV+EG+NVVRDIEKVGSGSGKTSRPVTIADCGQLS Sbjct: 1 MSNPKVFFDMAIAGNPAGRIVMELYADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSTFHRVIPNFMCQGGDFTAGNGTGAESIYGAKFADENFIKRHTGPGILSMANAGAGTNGSQFFICTEKTEWLDGKHVVFGKVIEGMNVVRDIEKVGSGSGKTSRPVTIADCGQLS 172
BLAST of rna-TanjilR_23401 vs. DB:Swiss
Match: CYP1_SOYBN (Peptidyl-prolyl cis-trans isomerase 1 OS=Glycine max OX=3847 GN=Cyp1 PE=2 SV=1) HSP 1 Score: 300.056 bits (767), Expect = 1.498e-104 Identity = 156/172 (90.70%), Postives = 164/172 (95.35%), Query Frame = 1 Query: 1 MSNPKVFFDMAIGGSPAGRIVMELYADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSSFHRVIPNFMCQXXXXXXXXXXXXESIYGAKFADENFIKKHTGPGILSMANAGAGTNGSQFFICTEKTEWLDGKHVVFGKVVEGLNVVRDIEKVGSGSGKTSRPVTIADCGQLS 516 M NPKVFFDM IGG AGRIVMELYAD TPRTAENFRALCTGEKGVGRSGKPLHYKGSSFHRVIP+FMCQGGDFTAGNGTGGESIYGAKFADENF+KKHTGPGILSMANAG GTNGSQFFICTEKTEWLDGKHVVFG+V+EGLNVV+DIEKVGSGSG+TS+PV IA+CGQ S Sbjct: 1 MPNPKVFFDMTIGGQSAGRIVMELYADVTPRTAENFRALCTGEKGVGRSGKPLHYKGSSFHRVIPSFMCQGGDFTAGNGTGGESIYGAKFADENFVKKHTGPGILSMANAGPGTNGSQFFICTEKTEWLDGKHVVFGQVIEGLNVVKDIEKVGSGSGRTSKPVVIANCGQPS 172
BLAST of rna-TanjilR_23401 vs. DB:Swiss
Match: CP19A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Arabidopsis thaliana OX=3702 GN=CYP19-1 PE=2 SV=1) HSP 1 Score: 291.197 bits (744), Expect = 4.652e-101 Identity = 149/171 (87.13%), Postives = 160/171 (93.57%), Query Frame = 1 Query: 4 SNPKVFFDMAIGGSPAGRIVMELYADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSSFHRVIPNFMCQXXXXXXXXXXXXESIYGAKFADENFIKKHTGPGILSMANAGAGTNGSQFFICTEKTEWLDGKHVVFGKVVEGLNVVRDIEKVGSGSGKTSRPVTIADCGQLS 516 +NPKV+FDM +GG AGRIVMELYADTTP TAENFRALCTGE+G+G+ GKPLHYKGSSFHRVIP FMCQGGDFTAGNGTGGESIYG+KF DENFIKKHTGPGILSMANAGA TNGSQFFICTEKT WLDGKHVVFG+VVEGLNVVRDIEKVGS SG+TS+PV IADCGQ+S Sbjct: 3 TNPKVYFDMTVGGKSAGRIVMELYADTTPETAENFRALCTGERGIGKQGKPLHYKGSSFHRVIPKFMCQGGDFTAGNGTGGESIYGSKFKDENFIKKHTGPGILSMANAGANTNGSQFFICTEKTSWLDGKHVVFGQVVEGLNVVRDIEKVGSDSGRTSKPVVIADCGQIS 173
BLAST of rna-TanjilR_23401 vs. DB:Swiss
Match: CYPH_CATRO (Peptidyl-prolyl cis-trans isomerase OS=Catharanthus roseus OX=4058 GN=PCKR1 PE=1 SV=1) HSP 1 Score: 284.648 bits (727), Expect = 1.752e-98 Identity = 147/172 (85.47%), Postives = 159/172 (92.44%), Query Frame = 1 Query: 1 MSNPKVFFDMAIGGSPAGRIVMELYADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSSFHRVIPNFMCQXXXXXXXXXXXXESIYGAKFADENFIKKHTGPGILSMANAGAGTNGSQFFICTEKTEWLDGKHVVFGKVVEGLNVVRDIEKVGSGSGKTSRPVTIADCGQLS 516 M NP+VFFDM++GG PAGRIVMEL+ADTTPRTAENFRALCTGEKG GRSGKPLHYK SSFHRVIP FMCQGGDFTAGNGTGGESIYGAKFADENFIKKHTGPGILSMANAG TNGSQFFICT KTEWLDGKHVVFG+VVEG++VV+ IEKVGS SG+T++ V + DCGQLS Sbjct: 1 MPNPRVFFDMSVGGQPAGRIVMELFADTTPRTAENFRALCTGEKGTGRSGKPLHYKDSSFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFADENFIKKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTAKKVVVEDCGQLS 172
BLAST of rna-TanjilR_23401 vs. DB:Swiss
Match: CP19B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Arabidopsis thaliana OX=3702 GN=CYP19-2 PE=2 SV=1) HSP 1 Score: 280.411 bits (716), Expect = 7.976e-97 Identity = 144/171 (84.21%), Postives = 159/171 (92.98%), Query Frame = 1 Query: 4 SNPKVFFDMAIGGSPAGRIVMELYADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSSFHRVIPNFMCQXXXXXXXXXXXXESIYGAKFADENFIKKHTGPGILSMANAGAGTNGSQFFICTEKTEWLDGKHVVFGKVVEGLNVVRDIEKVGSGSGKTSRPVTIADCGQLS 516 S+PKVFFDM IGG+PAG+IVMELY D TP+TAENFRALCTGEKGVGRSGKPLH+KGSSFHRVIPNFMCQGGDFT GNGTGGESIYGAKF DENF +KHTGPGILSMANAGA TNGSQFFICT KT+WLDGKHVVFG+VVEGL+VV+ IEK+GS SGK ++PV IADCG++S Sbjct: 3 SHPKVFFDMTIGGAPAGKIVMELYTDKTPKTAENFRALCTGEKGVGRSGKPLHFKGSSFHRVIPNFMCQGGDFTKGNGTGGESIYGAKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKIGSSSGKPTKPVVIADCGEIS 173
BLAST of rna-TanjilR_23401 vs. DB:Swiss
Match: CYPH_SOLLC (Peptidyl-prolyl cis-trans isomerase OS=Solanum lycopersicum OX=4081 GN=CYP PE=2 SV=1) HSP 1 Score: 279.256 bits (713), Expect = 2.484e-96 Identity = 142/171 (83.04%), Postives = 159/171 (92.98%), Query Frame = 1 Query: 1 MSNPKVFFDMAIGGSPAGRIVMELYADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSSFHRVIPNFMCQXXXXXXXXXXXXESIYGAKFADENFIKKHTGPGILSMANAGAGTNGSQFFICTEKTEWLDGKHVVFGKVVEGLNVVRDIEKVGSGSGKTSRPVTIADCGQL 513 M+NPKVFFD+ IGG+PAGR+VMEL+ADTTP+TAENFRALCTGEKGVG+ GKPLHYKGS+FHRVIP FMCQGGDFTAGNGTGGESIYGAKF DENF+KKHTGPGILSMANAG GTNGSQFFICT KTEWL+GKHVVFG+VVEG++V++ E VGS SG+ S+PV IADCGQL Sbjct: 1 MANPKVFFDLTIGGAPAGRVVMELFADTTPKTAENFRALCTGEKGVGKMGKPLHYKGSTFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFNDENFVKKHTGPGILSMANAGPGTNGSQFFICTAKTEWLNGKHVVFGQVVEGMDVIKKAEAVGSSSGRCSKPVVIADCGQL 171
BLAST of rna-TanjilR_23401 vs. DB:Swiss
Match: CP18C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Arabidopsis thaliana OX=3702 GN=CYP18-3 PE=1 SV=1) HSP 1 Score: 274.248 bits (700), Expect = 2.570e-94 Identity = 143/172 (83.14%), Postives = 156/172 (90.70%), Query Frame = 1 Query: 1 MSNPKVFFDMAIGGSPAGRIVMELYADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSSFHRVIPNFMCQXXXXXXXXXXXXESIYGAKFADENFIKKHTGPGILSMANAGAGTNGSQFFICTEKTEWLDGKHVVFGKVVEGLNVVRDIEKVGSGSGKTSRPVTIADCGQLS 516 M+ PKV+FDM I G PAGRIVMELY D TPRTAENFRALCTGEKGVG +GKPLH+KGS FHRVIPNFMCQGGDFTAGNGTGGESIYG+KF DENF +KHTGPGILSMANAGA TNGSQFFICT KT+WLDGKHVVFG+VVEGL+VV+ IEKVGS SGK ++PV +ADCGQLS Sbjct: 1 MAFPKVYFDMTIDGQPAGRIVMELYTDKTPRTAENFRALCTGEKGVGGTGKPLHFKGSKFHRVIPNFMCQGGDFTAGNGTGGESIYGSKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKVGSSSGKPTKPVVVADCGQLS 172
BLAST of rna-TanjilR_23401 vs. DB:Swiss
Match: CYPH_BRANA (Peptidyl-prolyl cis-trans isomerase OS=Brassica napus OX=3708 GN=CYP PE=2 SV=2) HSP 1 Score: 273.478 bits (698), Expect = 4.955e-94 Identity = 140/171 (81.87%), Postives = 153/171 (89.47%), Query Frame = 1 Query: 1 MSNPKVFFDMAIGGSPAGRIVMELYADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSSFHRVIPNFMCQXXXXXXXXXXXXESIYGAKFADENFIKKHTGPGILSMANAGAGTNGSQFFICTEKTEWLDGKHVVFGKVVEGLNVVRDIEKVGSGSGKTSRPVTIADCGQL 513 M NPKV+FDM +G AGRIVMELYADT P TAENFRALCTGE+G+G+SGKPLHYKGS+FHRVIP FMCQGGDFTAGNGTGGESIYG KF DENF+KKHTGPGILSM NAG+ TNGSQFFICTEKT WLDGKHVVFG+VVEG++VVRDIEKVGS SG+TS+ V DCGQL Sbjct: 1 MVNPKVYFDMTVGDKAAGRIVMELYADTVPETAENFRALCTGERGIGKSGKPLHYKGSAFHRVIPKFMCQGGDFTAGNGTGGESIYGMKFKDENFVKKHTGPGILSMRNAGSNTNGSQFFICTEKTSWLDGKHVVFGQVVEGMDVVRDIEKVGSDSGRTSKKVVTCDCGQL 171
BLAST of rna-TanjilR_23401 vs. DB:Swiss
Match: CP18D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Arabidopsis thaliana OX=3702 GN=CYP18-4 PE=1 SV=1) HSP 1 Score: 269.24 bits (687), Expect = 1.889e-92 Identity = 140/172 (81.40%), Postives = 155/172 (90.12%), Query Frame = 1 Query: 1 MSNPKVFFDMAIGGSPAGRIVMELYADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSSFHRVIPNFMCQXXXXXXXXXXXXESIYGAKFADENFIKKHTGPGILSMANAGAGTNGSQFFICTEKTEWLDGKHVVFGKVVEGLNVVRDIEKVGSGSGKTSRPVTIADCGQLS 516 MSNP+VFFDM++ G+P GRI MEL+ADTTP TAENFRALCTGEKG+G+ GKPLH+KGS FHRVIP FMCQGGDFTA NGTGGESIYGAKF DENFIKKHTG GILSMAN+G TNGSQFFICT+KT WLDGKHVVFG+VV+GL+VV+ IEKVGS SGKTS+ VTI DCGQLS Sbjct: 1 MSNPRVFFDMSLSGTPIGRIEMELFADTTPNTAENFRALCTGEKGMGKLGKPLHFKGSIFHRVIPGFMCQGGDFTAKNGTGGESIYGAKFKDENFIKKHTGAGILSMANSGPNTNGSQFFICTDKTSWLDGKHVVFGQVVKGLDVVKAIEKVGSDSGKTSKVVTITDCGQLS 172
BLAST of rna-TanjilR_23401 vs. DB:Swiss
Match: CYPH_MAIZE (Peptidyl-prolyl cis-trans isomerase OS=Zea mays OX=4577 GN=CYP PE=2 SV=1) HSP 1 Score: 259.225 bits (661), Expect = 2.269e-88 Identity = 132/172 (76.74%), Postives = 151/172 (87.79%), Query Frame = 1 Query: 1 MSNPKVFFDMAIGGSPAGRIVMELYADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSSFHRVIPNFMCQXXXXXXXXXXXXESIYGAKFADENFIKKHTGPGILSMANAGAGTNGSQFFICTEKTEWLDGKHVVFGKVVEGLNVVRDIEKVGSGSGKTSRPVTIADCGQLS 516 M+NP+VFFDM +GG+PAGRIVMELYA+ P+TAENFRALCTGEKGVG+SGKPLHYKGS+FHRVIP FMCQGGDFT GNGTGGESIYG KF DE F++K PG+LSMANAG TNGSQFFICT T WLDGKHVVFG+VVEG++VV+ IEKVG+ +G TS+ V +ADCGQLS Sbjct: 1 MANPRVFFDMTVGGAPAGRIVMELYANEVPKTAENFRALCTGEKGVGKSGKPLHYKGSTFHRVIPEFMCQGGDFTRGNGTGGESIYGEKFPDEKFVRKQPAPGVLSMANAGPNTNGSQFFICTVATPWLDGKHVVFGQVVEGMDVVKAIEKVGTRNGSTSKVVKVADCGQLS 172 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_23401 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_23401_La_Tanjil_v1.0 ID=rna-TanjilR_23401_La_Tanjil_v1.0; Name=rna-TanjilR_23401; organism=Lupinus angustifolius; type=mRNA; length=519bpback to top protein sequence of rna-TanjilR_23401_La_Tanjil_v1.0 >rna-TanjilR_23401_La_Tanjil_v1.0 ID=rna-TanjilR_23401_La_Tanjil_v1.0; Name=rna-TanjilR_23401_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=172bpback to top mRNA from alignment at Chr_LG08-CM007368.1:24969414..24969932- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_23401_La_Tanjil_v1.0 ID=rna-TanjilR_23401_La_Tanjil_v1.0; Name=rna-TanjilR_23401; organism=Lupinus angustifolius; type=mRNA; length=519bp; location=Sequence derived from: Chr_LG08-CM007368.1:24969414..24969932- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG08-CM007368.1:24969414..24969932- >rna-TanjilR_23401_La_Tanjil_v1.0 ID=rna-TanjilR_23401_La_Tanjil_v1.0; Name=rna-TanjilR_23401; organism=Lupinus angustifolius; type=CDS; length=519bp; location=Sequence derived from: Chr_LG08-CM007368.1:24969414..24969932- (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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