rna-TanjilR_23373

Transcript Overview
Namerna-TanjilR_23373
Unique Namerna-TanjilR_23373_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length1646
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG08-CM007368.1supercontigChr_LG08-CM007368.1:25156110..25157755 -Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL254Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL393Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL607Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR1338Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR1354Cicer arietinum ICC 4958 genome v2Cicer arietinum
anccR1455Cajanus cajan Asha genome v1.0Cajanus cajan
ancaR1147Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR1161Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancrR1343Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0969Pisum sativum Cameor genome v1aPisum sativum
anpsR0980Pisum sativum Cameor genome v1aPisum sativum
anpvR1276Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR1085Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR1201Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR1120Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anvfhR1188Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR1175Vicia faba cv. Tiffany genome v1.0Vicia faba
anvrvR1071Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR1037Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR1232Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR1046Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR1055Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR1191Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR1109Cicer arietinum
ancarR1124Cicer arietinum
anccaR1080Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR1276Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR1187Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvstR1266Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR1275Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvunR1046Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR1313Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
Ca_15079Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
PvulFLAVERTChr11.1000142Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vum_06G01796.1Vigna umbellata FF25 genome v1.0Vigna umbellata
rna-XM_014637495.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
XM_058874352.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Va08G070670.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vigun11g203400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
LR48_mrnaVigan08g197500Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vigun11g203400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
jg8277.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Psat7g171120.1Pisum sativum Cameor genome v1aPisum sativum
Vfaba.Hedin2.R1.6g061120.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vigan.06G249900.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Ca_22271.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Vigst.06G215800.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
rna-XM_004511402.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Ca_11199Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Cc_v2.0_08835.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vfaba.Tiffany.R1.6g050320.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Psat07G0386900-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Phvul.011G021700.2Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Cr_16512.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
rna-XM_012717201.2Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
evm.model.Chr11.1851.1.62113174Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Ca_17215.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
rna-KK1_021644Cajanus cajan Asha genome v1.0Cajanus cajan

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-TanjilR_22157Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_23373gene-TanjilG_23373_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_23373rna-TanjilR_23373_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_23373_La_Tanjil_v1.0rna-TanjilR_23373_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_23373_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:25157627..25157755rna-TanjilR_23373_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:25157627..25157755Lupinus angustifoliusCDS
rna-TanjilR_23373_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:25156892..25156992rna-TanjilR_23373_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:25156892..25156992Lupinus angustifoliusCDS
rna-TanjilR_23373_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:25156308..25156405rna-TanjilR_23373_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:25156308..25156405Lupinus angustifoliusCDS
rna-TanjilR_23373_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:25156110..25156210rna-TanjilR_23373_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:25156110..25156210Lupinus angustifoliusCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_23373_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:25157627..25157755rna-TanjilR_23373_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:25157627..25157755Lupinus angustifoliusexon
rna-TanjilR_23373_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:25156892..25156992rna-TanjilR_23373_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:25156892..25156992Lupinus angustifoliusexon
rna-TanjilR_23373_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:25156308..25156405rna-TanjilR_23373_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:25156308..25156405Lupinus angustifoliusexon
rna-TanjilR_23373_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:25156110..25156210rna-TanjilR_23373_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:25156110..25156210Lupinus angustifoliusexon


Homology
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BLAST of rna-TanjilR_23373 vs. DB:Swiss
Match: CCB12_ORYSJ (Cyclin-B1-2 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCB1-2 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 1.432e-10
Identity = 33/64 (51.56%), Postives = 41/64 (64.06%), Query Frame = 2 
Query: 1256 FFDSSYNLRNKL*ACDAKHTPKLMYHATVPYRFQRPPGAIPSSMLGLEALTGDLDNFGFEDYLN 1447
             + S++N+R  L              A +  +FQRPPGA+PSSMLG EALTG LD+FGFEDYLN
Sbjct:   58 IYGSAFNIRKDL-------------DAQILSKFQRPPGALPSSMLGYEALTGSLDDFGFEDYLN 108
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_23373 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
CCB12_ORYSJ1.432e-1051.56Cyclin-B1-2 OS=Oryza sativa subsp. japonica OX=399... [more]
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008012Proteasome maturation factor Ump1PFAMPF05348UMP1coord: 15..130
e-value: 1.2E-33
score: 115.8

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_23373_La_Tanjil_v1.0 ID=rna-TanjilR_23373_La_Tanjil_v1.0; Name=rna-TanjilR_23373; organism=Lupinus angustifolius; type=mRNA; length=1646bp
ATGGAGGAAACATCAAAGAGTATATCACACGAAATCGGAGGAGTTCAAAA
CGATGCGTTTCGTTTCGGTCTTCATGGTGTTAAGAGCGACATCGTTGGCT
CTCACCCTCTTCAATCTTCCCTCCATTCTGTAATCTCTCTCTCTCTCTGC
GTTTTTTTCATGTTCCTCTTTTCATTAGGTTTTTTTTTGAATTAAAAAGC
TTATCATTTGACGGAAAACGATATAAATTACCATATAACCAACCAGATAT
CAACGGGCGTTGGTTCAAGTGGTACAAGTTTGATTTCCCTTAAGCAAGGT
CTCGGGTTTAAGTTTTGTGGATGAAAAAAATGTTTGCTGGGAGAGTTAGC
CCCCACATACCAGTGGATGTTCCCGGCTTACCTTTAGTGCGAAGATACTT
ATGAGAAACCAAAAATATAACCAAACAGATTCTTCAATTTCTGATTTATT
ACTGTTCTCTTAATGTTTGGTTCTTGAGGAAATTAAGGTTTATGAGATAA
TATTTGAGTATATAGTCAGTTTGATCCTATACAGTGTAGTCGCTCATTGA
TTTAGTAATTACACTTCAGTCCTTGAAAGGGAATCAGTTTAGTCTATGCA
ATTTCTCGGGGACTAAAGTGATAGGTGTTACATTGTCAAGGATCAAAGTG
GCTATTTACTCGATAATATTTTAAACATGTTTATTTTGTTGCAGAAAGAT
GGTTGGGTTGGGTTGATGTGAATCTCAGTTCTCTTAGTGTGTGATTGTGT
TTGATATTGTCAGGCAAGGAGGGTAGATGAAGCGATGAAAAGGCAATGTT
TGGTCAATTTGTATGGAACCGCTTTTCCTGTGAAGCACGAACTTGAGAGT
CAAATACTTTCTAGGTATGAGTCTTCATCGAATAATCTTTGTCTTCTCCG
TTTCTTATATTAATGTCCCGATAAGGGGAAAAAGGATTTTGTGCTCTGCC
CAGCAAAACTAACTTCGAGATGGTAACTTATAGCCGTAGGTTATGAGATT
GTAGTTAAAAACTTATACATGTGTAGTTAGTTGATTGAATGAGTGCAATT
TGGCAGACTAGCTGGACAACTAGCAGAGATCTATTAAATGACTTAAAACA
TCATGTAGTATTATACTTGGTTGGGGTAAAAATTGTAATTTGTTAAAAAA
AATTGAAGTGCAAAACGAGACGCGAATTATTGGAAGAACTCATATCTTTT
GAAAAGCTACTAGACATAAGCTAGCTCTCAAAAGTTACAATCTCAGCTCT
ATAAGTTTTTTGACTCAAGCTATAATCTACGAAATAAGCTATAAGCTTGT
GATGCCAAACACACACCTAAGTTGATGTATCATGCCACTGTTCCTTATAG
GTTCCAGAGGCCTCCTGGAGCGATTCCATCGTCAATGCTTGGTTTGGAGG
CTTTAACAGGAGATCTTGACAACTTTGGTTTTGAGGATTATCTAAATGGT
AATAGGATTTCCCTTTACTTCCTGTATTGTTGGCAGGGTTTATTAGGCTT
CATTAACATTGGACATTGTTGTTATGTGTACTTACATGAATGCAGATCCG
AGAGAATTGGAGGGATTTCGGCCATTGGACATGCATCATGGGATGGAAGT
ACGCCTTGGTCTATCTAAGGGACCAGTCTATCCCAGTGTTATGTAA
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protein sequence of rna-TanjilR_23373_La_Tanjil_v1.0

>rna-TanjilR_23373_La_Tanjil_v1.0 ID=rna-TanjilR_23373_La_Tanjil_v1.0; Name=rna-TanjilR_23373_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=142bp
MEETSKSISHEIGGVQNDAFRFGLHGVKSDIVGSHPLQSSLHSARRVDEA
MKRQCLVNLYGTAFPVKHELESQILSRFQRPPGAIPSSMLGLEALTGDLD
NFGFEDYLNDPRELEGFRPLDMHHGMEVRLGLSKGPVYPSVM
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mRNA from alignment at Chr_LG08-CM007368.1:25156110..25157755-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_23373_La_Tanjil_v1.0 ID=rna-TanjilR_23373_La_Tanjil_v1.0; Name=rna-TanjilR_23373; organism=Lupinus angustifolius; type=mRNA; length=1646bp; location=Sequence derived from: Chr_LG08-CM007368.1:25156110..25157755- (Lupinus angustifolius
ATGGAGGAAACATCAAAGAGTATATCACACGAAATCGGAGGAGTTCAAAA
CGATGCGTTTCGTTTCGGTCTTCATGGTGTTAAGAGCGACATCGTTGGCT
CTCACCCTCTTCAATCTTCCCTCCATTCTGTAATCTCTCTCTCTCTCTGC
GTTTTTTTCATGTTCCTCTTTTCATTAGGTTTTTTTTTGAATTAAAAAGC
TTATCATTTGACGGAAAACGATATAAATTACCATATAACCAACCAGATAT
CAACGGGCGTTGGTTCAAGTGGTACAAGTTTGATTTCCCTTAAGCAAGGT
CTCGGGTTTAAGTTTTGTGGATGAAAAAAATGTTTGCTGGGAGAGTTAGC
CCCCACATACCAGTGGATGTTCCCGGCTTACCTTTAGTGCGAAGATACTT
ATGAGAAACCAAAAATATAACCAAACAGATTCTTCAATTTCTGATTTATT
ACTGTTCTCTTAATGTTTGGTTCTTGAGGAAATTAAGGTTTATGAGATAA
TATTTGAGTATATAGTCAGTTTGATCCTATACAGTGTAGTCGCTCATTGA
TTTAGTAATTACACTTCAGTCCTTGAAAGGGAATCAGTTTAGTCTATGCA
ATTTCTCGGGGACTAAAGTGATAGGTGTTACATTGTCAAGGATCAAAGTG
GCTATTTACTCGATAATATTTTAAACATGTTTATTTTGTTGCAGAAAGAT
GGTTGGGTTGGGTTGATGTGAATCTCAGTTCTCTTAGTGTGTGATTGTGT
TTGATATTGTCAGGCAAGGAGGGTAGATGAAGCGATGAAAAGGCAATGTT
TGGTCAATTTGTATGGAACCGCTTTTCCTGTGAAGCACGAACTTGAGAGT
CAAATACTTTCTAGGTATGAGTCTTCATCGAATAATCTTTGTCTTCTCCG
TTTCTTATATTAATGTCCCGATAAGGGGAAAAAGGATTTTGTGCTCTGCC
CAGCAAAACTAACTTCGAGATGGTAACTTATAGCCGTAGGTTATGAGATT
GTAGTTAAAAACTTATACATGTGTAGTTAGTTGATTGAATGAGTGCAATT
TGGCAGACTAGCTGGACAACTAGCAGAGATCTATTAAATGACTTAAAACA
TCATGTAGTATTATACTTGGTTGGGGTAAAAATTGTAATTTGTTAAAAAA
AATTGAAGTGCAAAACGAGACGCGAATTATTGGAAGAACTCATATCTTTT
GAAAAGCTACTAGACATAAGCTAGCTCTCAAAAGTTACAATCTCAGCTCT
ATAAGTTTTTTGACTCAAGCTATAATCTACGAAATAAGCTATAAGCTTGT
GATGCCAAACACACACCTAAGTTGATGTATCATGCCACTGTTCCTTATAG
GTTCCAGAGGCCTCCTGGAGCGATTCCATCGTCAATGCTTGGTTTGGAGG
CTTTAACAGGAGATCTTGACAACTTTGGTTTTGAGGATTATCTAAATGGT
AATAGGATTTCCCTTTACTTCCTGTATTGTTGGCAGGGTTTATTAGGCTT
CATTAACATTGGACATTGTTGTTATGTGTACTTACATGAATGCAGATCCG
AGAGAATTGGAGGGATTTCGGCCATTGGACATGCATCATGGGATGGAAGT
ACGCCTTGGTCTATCTAAGGGACCAGTCTATCCCAGTGTTATGTAA
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Coding sequence (CDS) from alignment at Chr_LG08-CM007368.1:25156110..25157755-

>rna-TanjilR_23373_La_Tanjil_v1.0 ID=rna-TanjilR_23373_La_Tanjil_v1.0; Name=rna-TanjilR_23373; organism=Lupinus angustifolius; type=CDS; length=429bp; location=Sequence derived from: Chr_LG08-CM007368.1:25156110..25157755- (Lupinus angustifolius
ATGGAGGAAACATCAAAGAGTATATCACACGAAATCGGAGGAGTTCAAAA
CGATGCGTTTCGTTTCGGTCTTCATGGTGTTAAGAGCGACATCGTTGGCT
CTCACCCTCTTCAATCTTCCCTCCATTCTGCAAGGAGGGTAGATGAAGCG
ATGAAAAGGCAATGTTTGGTCAATTTGTATGGAACCGCTTTTCCTGTGAA
GCACGAACTTGAGAGTCAAATACTTTCTAGGTTCCAGAGGCCTCCTGGAG
CGATTCCATCGTCAATGCTTGGTTTGGAGGCTTTAACAGGAGATCTTGAC
AACTTTGGTTTTGAGGATTATCTAAATGATCCGAGAGAATTGGAGGGATT
TCGGCCATTGGACATGCATCATGGGATGGAAGTACGCCTTGGTCTATCTA
AGGGACCAGTCTATCCCAGTGTTATGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR008012Ump1
Vocabulary: Biological Process
TermDefinition
GO:0043248proteasome assembly