rna-TanjilR_19831
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_19831 vs. DB:Swiss
Match: SAP8_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 8 OS=Oryza sativa subsp. japonica OX=39947 GN=SAP8 PE=2 SV=1) HSP 1 Score: 219.55 bits (558), Expect = 1.049e-72 Identity = 105/171 (61.40%), Postives = 134/171 (78.36%), Query Frame = 1 Query: 10 HDETGCQAQERPILCVNNCGFFGRAATMNMCSKCYKDMLLKQEQDKLAASSVENIVNRTSNGKGKQVVKSTAIDVQVETVKVKTICAEIXXXXXXXX--XXQNKAKTGPSRCATCKKRVGLTGFSCKCGNLFCAMHRYSDKHDCQYDYRAVGQDAIAKANPVIKADKLDKI 516 H ETGCQ E PILC+NNCGFFG AATMNMCSKC+K+M++KQEQ KLAASS+++IVN GK+ + + +V V V+VKT+ A+ + + E + K + GP+RC+TC+KRVGLTGF+C+CGNL+CAMHRYSDKHDCQ+DYR +DAIAKANPV+KA+KLDKI Sbjct: 3 HKETGCQQPEGPILCINNCGFFGSAATMNMCSKCHKEMIMKQEQAKLAASSIDSIVN--GGDSGKEPIIAGHAEVAVAQVEVKTLVAQPAEIAGPSEGVTVNPKGREGPNRCSTCRKRVGLTGFNCRCGNLYCAMHRYSDKHDCQFDYRTAARDAIAKANPVVKAEKLDKI 171
BLAST of rna-TanjilR_19831 vs. DB:Swiss
Match: SAP8_ORYSI (Zinc finger A20 and AN1 domain-containing stress-associated protein 8 OS=Oryza sativa subsp. indica OX=39946 GN=SAP8 PE=2 SV=2) HSP 1 Score: 219.55 bits (558), Expect = 1.049e-72 Identity = 105/171 (61.40%), Postives = 134/171 (78.36%), Query Frame = 1 Query: 10 HDETGCQAQERPILCVNNCGFFGRAATMNMCSKCYKDMLLKQEQDKLAASSVENIVNRTSNGKGKQVVKSTAIDVQVETVKVKTICAEIXXXXXXXX--XXQNKAKTGPSRCATCKKRVGLTGFSCKCGNLFCAMHRYSDKHDCQYDYRAVGQDAIAKANPVIKADKLDKI 516 H ETGCQ E PILC+NNCGFFG AATMNMCSKC+K+M++KQEQ KLAASS+++IVN GK+ + + +V V V+VKT+ A+ + + E + K + GP+RC+TC+KRVGLTGF+C+CGNL+CAMHRYSDKHDCQ+DYR +DAIAKANPV+KA+KLDKI Sbjct: 3 HKETGCQQPEGPILCINNCGFFGSAATMNMCSKCHKEMIMKQEQAKLAASSIDSIVN--GGDSGKEPIIAGHAEVAVAQVEVKTLVAQPAEIAGPSEGVTVNPKGREGPNRCSTCRKRVGLTGFNCRCGNLYCAMHRYSDKHDCQFDYRTAARDAIAKANPVVKAEKLDKI 171
BLAST of rna-TanjilR_19831 vs. DB:Swiss
Match: SAP4_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=SAP4 PE=2 SV=1) HSP 1 Score: 214.542 bits (545), Expect = 9.965e-71 Identity = 102/171 (59.65%), Postives = 130/171 (76.02%), Query Frame = 1 Query: 10 HDETGCQAQERPILCVNNCGFFGRAATMNMCSKCYKDMLLKQEQDKLAASSVENIVNRTSNGKGKQVVKSTAIDVQVETVKVKTICAEIXXXXXXXXXXQ--NKAKTGPSRCATCKKRVGLTGFSCKCGNLFCAMHRYSDKHDCQYDYRAVGQDAIAKANPVIKADKLDKI 516 H E GCQ E PILC+NNCGFFG AATMNMCSKC+K+M++K+EQ KLAASS+++IVN GK V S + V V V+ KT+ + + + + E K K GP+RCATC+KRVGLTGF+C+CGN++CA+HRYSDKH+CQ+DYR +DAIAKANPV+KA+KLDKI Sbjct: 3 HKEAGCQQPEGPILCINNCGFFGSAATMNMCSKCHKEMIMKEEQAKLAASSIDSIVNGCDGGKEHIVAASGSTAVAVAQVEAKTLVVQPTDVAGTSEEVAVVPKVKEGPNRCATCRKRVGLTGFNCRCGNMYCALHRYSDKHECQFDYRTAARDAIAKANPVVKAEKLDKI 173
BLAST of rna-TanjilR_19831 vs. DB:Swiss
Match: SAP2_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 2 OS=Arabidopsis thaliana OX=3702 GN=SAP2 PE=2 SV=2) HSP 1 Score: 157.918 bits (398), Expect = 2.021e-48 Identity = 89/179 (49.72%), Postives = 116/179 (64.80%), Query Frame = 1 Query: 10 HDETGCQAQ-ERPILCVNNCGFFGRAATMNMCSKCYKDMLLKQEQDKLAASSVE------NIVNRTSNGKGKQVVKSTAIDVQVETVKVKTICAE---IXXXXXXXXXXQNKAKTGPSRCATCKKRVGLTGFSCKCGNLFCAMHRYSDKHDCQYDYRAVGQDAIAKANPVIKADKLDKI 516 HD+TGCQ+ E P LC NNCGFFG AATMNMCSKC+KDML +QEQ AS+V NI+ K+ + +D++ ++V+ T+ + + + + GPSRC TC KRVGLTGF C+CG+LFC HRY+D HDC ++Y A Q+AIAKANPV+KA+KLDKI Sbjct: 3 HDKTGCQSPPEGPKLCTNNCGFFGSAATMNMCSKCHKDMLFQQEQGAKFASAVSGTSSSSNII--------KETFTAALVDIETKSVEPMTVSVQPSSVQVVAEVVAPEEAAKPKGPSRCTTCNKRVGLTGFKCRCGSLFCGTHRYADVHDCSFNYHAAAQEAIAKANPVVKAEKLDKI 173
BLAST of rna-TanjilR_19831 vs. DB:Swiss
Match: SAP6_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=SAP6 PE=2 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 6.907e-42 Identity = 70/174 (40.23%), Postives = 96/174 (55.17%), Query Frame = 1 Query: 13 DETGCQAQERPILCVNNCGFFGRAATMNMCSKCYKDMLLKQ------EQDKLAASSVENIVNRTSNGKGKQVVKSTAIDVQVETVKVKTICAEIXXXXXXXXXXQNKAKTGPSRCATCKKRVGLTGFSCKCGNLFCAMHRYSDKHDCQYDYRAVGQDAIAKANPVIKADKLDKI 516 +ETG E PILCVNNCGFFG T NMCSKCY+D + + E+ LA+ S +V ++G V + ++ K +RC +C+K+VGLTGF C+CG FC+MHRY+D H C +DY+ VG++ IAK NP++KADK+ KI Sbjct: 11 EETGVHTPEAPILCVNNCGFFGSRMTENMCSKCYRDTVKAKTVATVVEKKPLASLSSTPLVTEVTDGGSGSVADGKQV------------------------MEEDTPKPPSNRCLSCRKKVGLTGFKCRCGGTFCSMHRYADSHKCTFDYKQVGREQIAKQNPLVKADKITKI 160
BLAST of rna-TanjilR_19831 vs. DB:Swiss
Match: SAP4_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 4 OS=Arabidopsis thaliana OX=3702 GN=SAP4 PE=1 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 1.719e-41 Identity = 70/168 (41.67%), Postives = 100/168 (59.52%), Query Frame = 1 Query: 13 DETGCQAQERPILCVNNCGFFGRAATMNMCSKCYKDMLLKQEQDKLAASSVENIVNRTSNGKGKQVVKSTAIDVQVETVKVKTICAEIXXXXXXXXXXQNKAKTGPSRCATCKKRVGLTGFSCKCGNLFCAMHRYSDKHDCQYDYRAVGQDAIAKANPVIKADKLDKI 516 +E C+ E LCVNNCGFFG +ATMN+CS CY D+ LKQ+Q S+VE+ ++ V+++ A ++++ T K I + Q P+RC C+KRVGLTGF C+CG FC HRY + H C +D+++ G++ IAKANP++ A KL KI Sbjct: 3 EEHRCETPEGHRLCVNNCGFFGSSATMNLCSNCYGDLCLKQQQQASMKSTVESSLSPVI----APVLENYAAELEIPTTKKTEEKKPIQIPTEQPSPPQR-----PNRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFKSAGREEIAKANPLVIAAKLQKI 161
BLAST of rna-TanjilR_19831 vs. DB:Swiss
Match: SAP1_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 1 OS=Arabidopsis thaliana OX=3702 GN=SAP1 PE=1 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 4.751e-40 Identity = 70/171 (40.94%), Postives = 102/171 (59.65%), Query Frame = 1 Query: 4 ESHDETGCQAQERPILCVNNCGFFGRAATMNMCSKCYKDMLLKQEQDKLAASSVENIVNRTSNGKGKQVVKSTAIDVQVETVKVKTICAEIXXXXXXXXXXQNKAKTGPSRCATCKKRVGLTGFSCKCGNLFCAMHRYSDKHDCQYDYRAVGQDAIAKANPVIKADKLDKI 516 E +D T E P LCV CGFFG + MN+CSKCY+D+ +EQ A ++VE +N N Q +S I + V + + S + + K+ +RC +C K+VG+TGF C+CG+ FC HRY + H+CQ+D++ V ++AIAKANPV+KADK+D+I Sbjct: 4 EQNDSTSFSPSE-PKLCVKGCGFFGSPSNMNLCSKCYRDIRATEEQTASAKAAVEKSLN--PNKPKTQPQQSQEI---TQGVLGSGSSSSSTRGGDSAAAPLDPPKSTATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFKGVAREAIAKANPVVKADKVDRI 168
BLAST of rna-TanjilR_19831 vs. DB:Swiss
Match: SAP9_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 9 OS=Oryza sativa subsp. japonica OX=39947 GN=SAP9 PE=2 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 1.660e-39 Identity = 69/172 (40.12%), Postives = 99/172 (57.56%), Query Frame = 1 Query: 1 MESHDETGCQAQERPILCVNNCGFFGRAATMNMCSKCYKDMLLKQEQDKLAASSVENIVNRTSNGKGKQVVKSTAIDVQVETVKVKTICAEIXXXXXXXXXXQNKAKTGPSRCATCKKRVGLTGFSCKCGNLFCAMHRYSDKHDCQYDYRAVGQDAIAKANPVIKADKLDKI 516 ++ E E PILCVNNCGFFG + T NMCSKCY+D + + +AA VE K +++ +E K + A A +++Q K +RC +C+K+VGLTGF C+CG FC+ HRY++ HDC +DY+ G+D IAK NPV+ A+K++KI Sbjct: 6 WKNESEETVHTPEAPILCVNNCGFFGSSMTNNMCSKCYRDFV---KVTTMAAPVVEK----------KAFTPASSSKTPLEPAKPDEVPA---AAVEDKQAAQEPPKPPSNRCLSCRKKVGLTGFQCRCGGTFCSTHRYTEAHDCTFDYKKAGRDQIAKQNPVVIAEKINKI 161
BLAST of rna-TanjilR_19831 vs. DB:Swiss
Match: SAP6_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 6 OS=Arabidopsis thaliana OX=3702 GN=SAP6 PE=2 SV=2) HSP 1 Score: 132.494 bits (332), Expect = 1.705e-38 Identity = 75/169 (44.38%), Postives = 105/169 (62.13%), Query Frame = 1 Query: 13 DETGCQAQERPILCVNNCGFFGRAATMNMCSKCYKDM-LLKQEQDKLAASSVENIVNRTSNGKGKQVVKSTAIDVQVETVKVKTICAEIXXXXXXXXXXQNKAKTGPSRCATCKKRVGLTGFSCKCGNLFCAMHRYSDKHDCQYDYRAVGQDAIAKANPVIKADKLDKI 516 +E CQ E LCVNNCGF G +ATMN+CS CY D+ L +Q+Q S+VE+ ++ + + S I ++ VK E A S + QN+ + P+RC TC+KRVGLTGF C+CG +FC +HRY + H C YD+++ G++ IAKANP++KA KL KI Sbjct: 3 EEHRCQTPESNRLCVNNCGFLGSSATMNLCSNCYGDLCLKQQQQSSSIKSTVESSLSVSPPSSSSSEISSPIIPPLLKNPSVKLEVPEKKAVISLPTTEQNQQQR-PNRCTTCRKRVGLTGFKCRCGTMFCGVHRYPEIHGCSYDFKSAGREEIAKANPLVKAAKLQKI 170
BLAST of rna-TanjilR_19831 vs. DB:Swiss
Match: SAP3_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 3 OS=Arabidopsis thaliana OX=3702 GN=SAP3 PE=2 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 3.351e-38 Identity = 63/160 (39.38%), Postives = 100/160 (62.50%), Query Frame = 1 Query: 37 ERPILCVNNCGFFGRAATMNMCSKCYKDMLLKQEQDKLAASSVENIVNRTSNGKGKQVVKSTAIDVQVETVKVKTICAEIXXXXXXXXXXQNKAKTGPSRCATCKKRVGLTGFSCKCGNLFCAMHRYSDKHDCQYDYRAVGQDAIAKANPVIKADKLDKI 516 + P LC NNCGFFG AT N+CSKC++D L QEQ+ +S+ ++ + ++ G S + + + A+ +++ + P RC TC++RVG+TGF C+CG +FC HRY+++H+C +D++ +G+D IAKANP++KADKL+KI Sbjct: 8 QEPRLCANNCGFFGSTATQNLCSKCFRD-LQHQEQN---SSTAKHALTQSLAAVGAAASSSVSPPPPPPADSKEIVEAKSEKRAAAEPEEADGPPQDPKRCLTCRRRVGITGFRCRCGFVFCGTHRYAEQHECSFDFKRMGKDKIAKANPIVKADKLEKI 163 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_19831 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_19831_La_Tanjil_v1.0 ID=rna-TanjilR_19831_La_Tanjil_v1.0; Name=rna-TanjilR_19831; organism=Lupinus angustifolius; type=mRNA; length=519bpback to top protein sequence of rna-TanjilR_19831_La_Tanjil_v1.0 >rna-TanjilR_19831_La_Tanjil_v1.0 ID=rna-TanjilR_19831_La_Tanjil_v1.0; Name=rna-TanjilR_19831_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=172bpback to top mRNA from alignment at Chr_LG09-CM007369.1:5179655..5180173+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_19831_La_Tanjil_v1.0 ID=rna-TanjilR_19831_La_Tanjil_v1.0; Name=rna-TanjilR_19831; organism=Lupinus angustifolius; type=mRNA; length=519bp; location=Sequence derived from: Chr_LG09-CM007369.1:5179655..5180173+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG09-CM007369.1:5179655..5180173+ >rna-TanjilR_19831_La_Tanjil_v1.0 ID=rna-TanjilR_19831_La_Tanjil_v1.0; Name=rna-TanjilR_19831; organism=Lupinus angustifolius; type=CDS; length=519bp; location=Sequence derived from: Chr_LG09-CM007369.1:5179655..5180173+ (Lupinus angustifoliusback to top |