rna-TanjilR_06410

Transcript Overview
Namerna-TanjilR_06410
Unique Namerna-TanjilR_06410_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length767
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG09-CM007369.1supercontigChr_LG09-CM007369.1:8098011..8098777 -Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL509Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL561Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL572Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL622Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR1396Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR1397Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR1402Cicer arietinum ICC 4958 genome v2Cicer arietinum
anccR1526Cajanus cajan Asha genome v1.0Cajanus cajan
ancaR1192Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR1200Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR1202Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancrR1402Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ancrR1409Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0998Pisum sativum Cameor genome v1aPisum sativum
anpsR1027Pisum sativum Cameor genome v1aPisum sativum
anpvR1348Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR1400Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR1152Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR1195Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR1308Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR1309Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR1139Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR1177Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anvfhR1228Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR1212Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR1253Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR1234Vicia faba cv. Tiffany genome v1.0Vicia faba
anvrvR1141Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR1173Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR1104Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR1147Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR1305Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR1332Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR1357Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR1082Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR1092Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR1278Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR1280Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR1293Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR1147Cicer arietinum
ancarR1152Cicer arietinum
ancarR1153Cicer arietinum
anccaR1141Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR1143Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR1153Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR1291Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR1300Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR1340Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR1217Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR1256Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvstR1333Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR1341Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvasR1368Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR1358Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR1376Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvunR1116Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR1156Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR1388Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR1444Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
Va03G069470.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vfaba.Hedin2.R1.5g120280.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vigst.04G191600.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Phvul.001G155000.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vigun01g137300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
PvulFLAVERTChr01.1012Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Ca_07310.2Cicer arietinum ICC 4958 genome v2Cicer arietinum
Vigun01g137300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Psat03G0216100-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
rna-XM_012713931.2Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
XM_058882014.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
jg40979.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
rna-XM_014639467.1Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Ca_04550Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vigan.08G069900.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vigan.04G303300.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Va02G066000.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
evm.model.Chr01.1338Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vfaba.Tiffany.R1.5g096800.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Cc_v2.0_04805.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Cc_v2.0_07544.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Ca_12184Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vum_08G00563.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Cr_06031.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
jg32636.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
LR48_mrnaVigan02g220400Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vum_04G02164.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_06410gene-TanjilG_06410_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_06410rna-TanjilR_06410_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_06410_La_Tanjil_v1.0rna-TanjilR_06410_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_06410_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:8098571..8098777rna-TanjilR_06410_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:8098571..8098777Lupinus angustifoliusCDS
rna-TanjilR_06410_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:8098251..8098437rna-TanjilR_06410_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:8098251..8098437Lupinus angustifoliusCDS
rna-TanjilR_06410_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:8098011..8098132rna-TanjilR_06410_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:8098011..8098132Lupinus angustifoliusCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_06410_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:8098571..8098777rna-TanjilR_06410_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:8098571..8098777Lupinus angustifoliusexon
rna-TanjilR_06410_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:8098251..8098437rna-TanjilR_06410_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:8098251..8098437Lupinus angustifoliusexon
rna-TanjilR_06410_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:8098011..8098132rna-TanjilR_06410_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:8098011..8098132Lupinus angustifoliusexon


Homology
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BLAST of rna-TanjilR_06410 vs. DB:Swiss
Match: P24B3_ARATH (Transmembrane emp24 domain-containing protein p24beta3 OS=Arabidopsis thaliana OX=3702 GN=At3g22845 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.663e-56
Identity = 47/62 (75.81%), Postives = 51/62 (82.26%), Query Frame = 2 
Query:  341 VTAPDGTMAYALKGVSGEKFELKALHHGIYKFCFHNPVSTPETVSFYIHVGHIPNEHDLAKD 526
            VT+P G +   LKG SG+KFE KA   G+YKFCFHNP STPETVSFYIHVGHIPNEHDLAKD
Sbjct:   73 VTSPAGNIVQTLKGTSGDKFEFKAPKSGMYKFCFHNPYSTPETVSFYIHVGHIPNEHDLAKD 134

HSP 2 Score: 84.7297 bits (208), Expect = 7.663e-56
Identity = 37/67 (55.22%), Postives = 51/67 (76.12%), Query Frame = 1 
Query:   31 VITFIGTIICHGL----ALSISLNDVECVSEYIANEGDIISGNFIVMDHDIFWGSDHPGIDFSVSYP 219
            V   IG I+ + +    +LS+++ND ECV EY+  EGD +SGNF+V+DHDIFWGSDHPG+DF+V+ P
Sbjct:   10 VFVLIGLILLNSINQISSLSVTVNDEECVQEYVLYEGDTVSGNFVVVDHDIFWGSDHPGLDFTVTSP 76

HSP 3 Score: 72.0182 bits (175), Expect = 7.663e-56
Identity = 32/38 (84.21%), Postives = 37/38 (97.37%), Query Frame = 3 
Query:  645 EHLDPINVKIAELREALESVISEQKYLKARDARHRYSN 758
            EHLDP+NVKIAELREALESV++EQKYLKARD RHR++N
Sbjct:  135 EHLDPVNVKIAELREALESVVAEQKYLKARDTRHRHTN 172
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_06410 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
P24B3_ARATH7.663e-5675.81Transmembrane emp24 domain-containing protein p24b... [more]
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009038GOLD domainSMARTSM01190EMP24_GP25L_2coord: 24..169
e-value: 2.6E-20
score: 83.5
IPR009038GOLD domainPFAMPF01105EMP24_GP25Lcoord: 27..168
e-value: 1.2E-25
score: 90.5
IPR009038GOLD domainPROSITEPS50866GOLDcoord: 32..119
score: 12.714
IPR036598GOLD domain superfamilySUPERFAMILY101576Supernatant protein factor (SPF), C-terminal domaincoord: 44..128

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_06410_La_Tanjil_v1.0 ID=rna-TanjilR_06410_La_Tanjil_v1.0; Name=rna-TanjilR_06410; organism=Lupinus angustifolius; type=mRNA; length=767bp
ATGGGTTGGTTTTCAAAGATCTTAACAATTGTGATCACTTTCATTGGCAC
CATAATATGTCATGGGCTTGCTCTTTCTATAAGTTTAAACGATGTGGAAT
GTGTATCAGAATATATTGCAAATGAAGGTGACATTATTTCTGGCAATTTT
ATAGTTATGGACCATGATATTTTCTGGGGCTCTGATCATCCTGGAATTGA
TTTCTCTGTAAGCTACCCCACAGCACTTTTCCTCATTTTTCATATTTTAG
TTTTTGGGTTTCTTATGTTTTCCTTTTATGATATTATTATATAATATATG
TGTGTGTGATGTATTAATGAATATAAGGTATGGTGTATAGGTGACAGCAC
CAGATGGGACAATGGCATATGCATTGAAGGGAGTATCAGGGGAGAAGTTT
GAGTTGAAAGCCTTACACCATGGAATATACAAATTCTGCTTTCATAATCC
TGTTTCCACACCAGAAACTGTTTCTTTCTACATTCATGTTGGTCACATCC
CAAATGAGCATGACTTAGCTAAAGATGGTTAGTTACTTACTTACTTACTT
CCATGTTTTTGTGCATGCATGCCACTCTAAAACTCACTACAATTATGTTA
CTTTCAACCAATTATGACTCATTTTAATTTGCTTTTTGGGTTTAGAGCAT
TTGGACCCAATTAATGTGAAGATTGCTGAGTTGAGAGAAGCATTGGAATC
TGTAATATCAGAGCAAAAGTACTTGAAAGCACGTGATGCTAGACACAGAT
ATAGTAACTTTTTCTAA
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protein sequence of rna-TanjilR_06410_La_Tanjil_v1.0

>rna-TanjilR_06410_La_Tanjil_v1.0 ID=rna-TanjilR_06410_La_Tanjil_v1.0; Name=rna-TanjilR_06410_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=171bp
MGWFSKILTIVITFIGTIICHGLALSISLNDVECVSEYIANEGDIISGNF
IVMDHDIFWGSDHPGIDFSVTAPDGTMAYALKGVSGEKFELKALHHGIYK
FCFHNPVSTPETVSFYIHVGHIPNEHDLAKDEHLDPINVKIAELREALES
VISEQKYLKARDARHRYSNFF
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mRNA from alignment at Chr_LG09-CM007369.1:8098011..8098777-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_06410_La_Tanjil_v1.0 ID=rna-TanjilR_06410_La_Tanjil_v1.0; Name=rna-TanjilR_06410; organism=Lupinus angustifolius; type=mRNA; length=767bp; location=Sequence derived from: Chr_LG09-CM007369.1:8098011..8098777- (Lupinus angustifolius
ATGGGTTGGTTTTCAAAGATCTTAACAATTGTGATCACTTTCATTGGCAC
CATAATATGTCATGGGCTTGCTCTTTCTATAAGTTTAAACGATGTGGAAT
GTGTATCAGAATATATTGCAAATGAAGGTGACATTATTTCTGGCAATTTT
ATAGTTATGGACCATGATATTTTCTGGGGCTCTGATCATCCTGGAATTGA
TTTCTCTGTAAGCTACCCCACAGCACTTTTCCTCATTTTTCATATTTTAG
TTTTTGGGTTTCTTATGTTTTCCTTTTATGATATTATTATATAATATATG
TGTGTGTGATGTATTAATGAATATAAGGTATGGTGTATAGGTGACAGCAC
CAGATGGGACAATGGCATATGCATTGAAGGGAGTATCAGGGGAGAAGTTT
GAGTTGAAAGCCTTACACCATGGAATATACAAATTCTGCTTTCATAATCC
TGTTTCCACACCAGAAACTGTTTCTTTCTACATTCATGTTGGTCACATCC
CAAATGAGCATGACTTAGCTAAAGATGGTTAGTTACTTACTTACTTACTT
CCATGTTTTTGTGCATGCATGCCACTCTAAAACTCACTACAATTATGTTA
CTTTCAACCAATTATGACTCATTTTAATTTGCTTTTTGGGTTTAGAGCAT
TTGGACCCAATTAATGTGAAGATTGCTGAGTTGAGAGAAGCATTGGAATC
TGTAATATCAGAGCAAAAGTACTTGAAAGCACGTGATGCTAGACACAGAT
ATAGTAACTTTTTCTAA
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Coding sequence (CDS) from alignment at Chr_LG09-CM007369.1:8098011..8098777-

>rna-TanjilR_06410_La_Tanjil_v1.0 ID=rna-TanjilR_06410_La_Tanjil_v1.0; Name=rna-TanjilR_06410; organism=Lupinus angustifolius; type=CDS; length=516bp; location=Sequence derived from: Chr_LG09-CM007369.1:8098011..8098777- (Lupinus angustifolius
ATGGGTTGGTTTTCAAAGATCTTAACAATTGTGATCACTTTCATTGGCAC
CATAATATGTCATGGGCTTGCTCTTTCTATAAGTTTAAACGATGTGGAAT
GTGTATCAGAATATATTGCAAATGAAGGTGACATTATTTCTGGCAATTTT
ATAGTTATGGACCATGATATTTTCTGGGGCTCTGATCATCCTGGAATTGA
TTTCTCTGTGACAGCACCAGATGGGACAATGGCATATGCATTGAAGGGAG
TATCAGGGGAGAAGTTTGAGTTGAAAGCCTTACACCATGGAATATACAAA
TTCTGCTTTCATAATCCTGTTTCCACACCAGAAACTGTTTCTTTCTACAT
TCATGTTGGTCACATCCCAAATGAGCATGACTTAGCTAAAGATGAGCATT
TGGACCCAATTAATGTGAAGATTGCTGAGTTGAGAGAAGCATTGGAATCT
GTAATATCAGAGCAAAAGTACTTGAAAGCACGTGATGCTAGACACAGATA
TAGTAACTTTTTCTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR009038GOLD_dom
IPR036598GOLD_dom_sf