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Transcript Overview
Name | rna-TanjilR_03273 |
Unique Name | rna-TanjilR_03273_La_Tanjil_v1.0 |
Type | mRNA |
Organism | Lupinus angustifolius (blue lupin) |
Sequence length | 2048 |
Product | hypothetical protein |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_03273 | rna-TanjilR_03273_La_Tanjil_v1.0-protein | Lupinus angustifolius | polypeptide |
rna-TanjilR_03273_La_Tanjil_v1.0 | rna-TanjilR_03273_La_Tanjil_v1.0 | Lupinus angustifolius | polypeptide |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_03273_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:1719431..1719859 | rna-TanjilR_03273_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:1719431..1719859 | Lupinus angustifolius | CDS |
rna-TanjilR_03273_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:1718895..1719068 | rna-TanjilR_03273_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:1718895..1719068 | Lupinus angustifolius | CDS |
rna-TanjilR_03273_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:1717812..1718036 | rna-TanjilR_03273_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:1717812..1718036 | Lupinus angustifolius | CDS |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_03273_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:1719431..1719859 | rna-TanjilR_03273_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:1719431..1719859 | Lupinus angustifolius | exon |
rna-TanjilR_03273_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:1718895..1719068 | rna-TanjilR_03273_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:1718895..1719068 | Lupinus angustifolius | exon |
rna-TanjilR_03273_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:1717812..1718036 | rna-TanjilR_03273_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:1717812..1718036 | Lupinus angustifolius | exon |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR010402 | CCT domain | PFAM | PF06203 | CCT | coord: 181..222 e-value: 3.0E-18 score: 65.6 |
IPR010402 | CCT domain | PROSITE | PS51017 | CCT | coord: 180..222 score: 15.715 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 58..110 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_03273_La_Tanjil_v1.0 ID=rna-TanjilR_03273_La_Tanjil_v1.0; Name=rna-TanjilR_03273; organism=Lupinus angustifolius; type=mRNA; length=2048bp ATGTATACTCACTACAATACCACAATTCCACGCGCCGCCGATTCCATCAG CTATGTTCCATCACCTCCGGATGCTACGACGGCATCACCAATGCACTTCT CCACCACTCTTCAGCAGCAACACTACCAACTGGGTATCGGCGAGTTGGAC ATGGTGCAACTCAACTCGGAGATGAGTTATAATAATAATAATAATAATCA GAATAGCAGTGGGAGTGGAGGAAGCAGCTATATGGGTTCGCCGAGTTCGA TGGCGAGTTACGAGACTCAACGATTGATGCAAAGGAGCGTTAGCAGCCAT TCGCTACCGAAGACAAATAATAATAATAATGGGCCCCACCATGCCTTTTC AGCTTTCTTTGCTGAGTTGCTTGAATCCTCACATGATGATGGTCCGGTGA GGAGAGTTTATAGTACCGGTGATCTCCATGTACGTATACTTTTCTCCCAT ATTCCTAGTGATTTTTTTCTACTACCAAATTATCTTATCACATTTTCGGG AAAGAATTAATATTTTTGAAAGTGAGTTTCCCTTCCTAACCAATAAACAT GACTGTCGATATAAAATCAAATGATAAATTCAATCTTATAAGAAATGGAC TATAATTGAGAGAATTAATTTTTATAGTGTGAACTAGTTATAAAAAACAA ATATGTTTTTTATTATTTATTTTTCTCATTTCTCATATAAATAAGTGAAA TTGATTTGAGATTTAGTGACACCTTTCTCACATGATATGCTTTCACCACT GAATTGAATCATGTTTTTGTTTTATTGTGCTGTTTGTACAGAGAATTAAT GGAATGCAACATTATCATCATTCAGATAGTCCATTGTCAAGTGAAAGTAG TATGATCATAGAAGGAATGAACAGAGCCAGTCCTTATAGCCCAGAGGAGA AGAAGGCAAGGATTGAGAGATACAAAAGCAAGAGAAACCAGAGGAACTTC AACAAGAAAATTAAGGTTTGCTCGTTTTTTATATGTTAATTAATATTGTA TTAGCTTCTAGAAGCTTTTTATTTTATTTTTTTCTTAAATAAATAAAAAC TTCTGCATGACAATAGGACAATTTTCTAAGAATGAAGGTCTTCAGTATAA TGATTTAAACTATATTAAGAGGAAAAACACTGCTGAATAACCATGTTACC CAATTAAGGTCATTAATAAAACAAATCTGAGGATGTAGTAAGACTAATAG GTAAGGGAACCAACACAATTTTGGACAATCCTTAAATGGGAAGAGATAGA GCGGCACAACCCTGGTCAAAAATCATATCATTAAAACTTAATTGTTTATT TATTTGCTAGCCTCAAAAGATATCTATCTTTTATACATAATTGTAGTTTC AGCTGTGCCTTAGTGTTAATGCATATTGCGACATGCCCCTAAATTTGTCA TTTGGGAAGCATGAAAATCTTCTAGAATCTTATTCGATGGATTTACATAT AGTAACCCCATTACTGTCAATGTCAAATTCTTTGAGGAAATTAAGGATGA ATGCAACATGATGTTTTATGAGTTTAAAATCTATGCACTAACATTATATA GTTTTTTAGACTTATACTGTCAGTCATTCATCATTCATTTGTAATACTTT TGTTTGAAAATCAATATTAGTTAACATATGAATGTTGTGGATGAATTGAC AGTGTAACACTTACACTGTAACTTATACATATTAAATCCATGTTTTATTC CTCTCCTATGCAGCATACTGTATATTGTTCTTTTACTCCATCACAATAAA TACTATTCAGTTATGACTTATTATGATACAAAGTCAGTATAAAAATGCTA ACTACTTCTCTTTTGCTGATTAGTATGCTTGTAGGAAAACATTGGCAGAT AGCAGGCCACGTATTAGAGGAAGATTTGCAAGGAATGATGAAATTGTAAG CAACCCTCAAGTTCAATGGAGCCATATTGGTGATGGAGAAGAAGCTGATG ATGAAGATGAGAATTGGGACAATTTCTTTAATTCTATAGTTCCTGAAAGT CTGGATCATGAGCACCATTGCAGTAACGCTTTTGATGTATTATATTAA back to topprotein sequence of rna-TanjilR_03273_La_Tanjil_v1.0 >rna-TanjilR_03273_La_Tanjil_v1.0 ID=rna-TanjilR_03273_La_Tanjil_v1.0; Name=rna-TanjilR_03273_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=275bp MYTHYNTTIPRAADSISYVPSPPDATTASPMHFSTTLQQQHYQLGIGELD MVQLNSEMSYNNNNNNQNSSGSGGSSYMGSPSSMASYETQRLMQRSVSSH SLPKTNNNNNGPHHAFSAFFAELLESSHDDGPVRRVYSTGDLHRINGMQH YHHSDSPLSSESSMIIEGMNRASPYSPEEKKARIERYKSKRNQRNFNKKI KYACRKTLADSRPRIRGRFARNDEIVSNPQVQWSHIGDGEEADDEDENWD NFFNSIVPESLDHEHHCSNAFDVLY back to topmRNA from alignment at Chr_LG07-CM007367.1:1717812..1719859- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >rna-TanjilR_03273_La_Tanjil_v1.0 ID=rna-TanjilR_03273_La_Tanjil_v1.0; Name=rna-TanjilR_03273; organism=Lupinus angustifolius; type=mRNA; length=2048bp; location=Sequence derived from: Chr_LG07-CM007367.1:1717812..1719859- (Lupinus angustifolius ATGTATACTCACTACAATACCACAATTCCACGCGCCGCCGATTCCATCAG
CTATGTTCCATCACCTCCGGATGCTACGACGGCATCACCAATGCACTTCT
CCACCACTCTTCAGCAGCAACACTACCAACTGGGTATCGGCGAGTTGGAC
ATGGTGCAACTCAACTCGGAGATGAGTTATAATAATAATAATAATAATCA
GAATAGCAGTGGGAGTGGAGGAAGCAGCTATATGGGTTCGCCGAGTTCGA
TGGCGAGTTACGAGACTCAACGATTGATGCAAAGGAGCGTTAGCAGCCAT
TCGCTACCGAAGACAAATAATAATAATAATGGGCCCCACCATGCCTTTTC
AGCTTTCTTTGCTGAGTTGCTTGAATCCTCACATGATGATGGTCCGGTGA
GGAGAGTTTATAGTACCGGTGATCTCCATGTACGTATACTTTTCTCCCAT
ATTCCTAGTGATTTTTTTCTACTACCAAATTATCTTATCACATTTTCGGG
AAAGAATTAATATTTTTGAAAGTGAGTTTCCCTTCCTAACCAATAAACAT
GACTGTCGATATAAAATCAAATGATAAATTCAATCTTATAAGAAATGGAC
TATAATTGAGAGAATTAATTTTTATAGTGTGAACTAGTTATAAAAAACAA
ATATGTTTTTTATTATTTATTTTTCTCATTTCTCATATAAATAAGTGAAA
TTGATTTGAGATTTAGTGACACCTTTCTCACATGATATGCTTTCACCACT
GAATTGAATCATGTTTTTGTTTTATTGTGCTGTTTGTACAGAGAATTAAT
GGAATGCAACATTATCATCATTCAGATAGTCCATTGTCAAGTGAAAGTAG
TATGATCATAGAAGGAATGAACAGAGCCAGTCCTTATAGCCCAGAGGAGA
AGAAGGCAAGGATTGAGAGATACAAAAGCAAGAGAAACCAGAGGAACTTC
AACAAGAAAATTAAGGTTTGCTCGTTTTTTATATGTTAATTAATATTGTA
TTAGCTTCTAGAAGCTTTTTATTTTATTTTTTTCTTAAATAAATAAAAAC
TTCTGCATGACAATAGGACAATTTTCTAAGAATGAAGGTCTTCAGTATAA
TGATTTAAACTATATTAAGAGGAAAAACACTGCTGAATAACCATGTTACC
CAATTAAGGTCATTAATAAAACAAATCTGAGGATGTAGTAAGACTAATAG
GTAAGGGAACCAACACAATTTTGGACAATCCTTAAATGGGAAGAGATAGA
GCGGCACAACCCTGGTCAAAAATCATATCATTAAAACTTAATTGTTTATT
TATTTGCTAGCCTCAAAAGATATCTATCTTTTATACATAATTGTAGTTTC
AGCTGTGCCTTAGTGTTAATGCATATTGCGACATGCCCCTAAATTTGTCA
TTTGGGAAGCATGAAAATCTTCTAGAATCTTATTCGATGGATTTACATAT
AGTAACCCCATTACTGTCAATGTCAAATTCTTTGAGGAAATTAAGGATGA
ATGCAACATGATGTTTTATGAGTTTAAAATCTATGCACTAACATTATATA
GTTTTTTAGACTTATACTGTCAGTCATTCATCATTCATTTGTAATACTTT
TGTTTGAAAATCAATATTAGTTAACATATGAATGTTGTGGATGAATTGAC
AGTGTAACACTTACACTGTAACTTATACATATTAAATCCATGTTTTATTC
CTCTCCTATGCAGCATACTGTATATTGTTCTTTTACTCCATCACAATAAA
TACTATTCAGTTATGACTTATTATGATACAAAGTCAGTATAAAAATGCTA
ACTACTTCTCTTTTGCTGATTAGTATGCTTGTAGGAAAACATTGGCAGAT
AGCAGGCCACGTATTAGAGGAAGATTTGCAAGGAATGATGAAATTGTAAG
CAACCCTCAAGTTCAATGGAGCCATATTGGTGATGGAGAAGAAGCTGATG
ATGAAGATGAGAATTGGGACAATTTCTTTAATTCTATAGTTCCTGAAAGT
CTGGATCATGAGCACCATTGCAGTAACGCTTTTGATGTATTATATTAA back to topCoding sequence (CDS) from alignment at Chr_LG07-CM007367.1:1717812..1719859- >rna-TanjilR_03273_La_Tanjil_v1.0 ID=rna-TanjilR_03273_La_Tanjil_v1.0; Name=rna-TanjilR_03273; organism=Lupinus angustifolius; type=CDS; length=828bp; location=Sequence derived from: Chr_LG07-CM007367.1:1717812..1719859- (Lupinus angustifolius ATGTATACTCACTACAATACCACAATTCCACGCGCCGCCGATTCCATCAG CTATGTTCCATCACCTCCGGATGCTACGACGGCATCACCAATGCACTTCT CCACCACTCTTCAGCAGCAACACTACCAACTGGGTATCGGCGAGTTGGAC ATGGTGCAACTCAACTCGGAGATGAGTTATAATAATAATAATAATAATCA GAATAGCAGTGGGAGTGGAGGAAGCAGCTATATGGGTTCGCCGAGTTCGA TGGCGAGTTACGAGACTCAACGATTGATGCAAAGGAGCGTTAGCAGCCAT TCGCTACCGAAGACAAATAATAATAATAATGGGCCCCACCATGCCTTTTC AGCTTTCTTTGCTGAGTTGCTTGAATCCTCACATGATGATGGTCCGGTGA GGAGAGTTTATAGTACCGGTGATCTCCATAGAATTAATGGAATGCAACAT TATCATCATTCAGATAGTCCATTGTCAAGTGAAAGTAGTATGATCATAGA AGGAATGAACAGAGCCAGTCCTTATAGCCCAGAGGAGAAGAAGGCAAGGA TTGAGAGATACAAAAGCAAGAGAAACCAGAGGAACTTCAACAAGAAAATT AAGTATGCTTGTAGGAAAACATTGGCAGATAGCAGGCCACGTATTAGAGG AAGATTTGCAAGGAATGATGAAATTGTAAGCAACCCTCAAGTTCAATGGA GCCATATTGGTGATGGAGAAGAAGCTGATGATGAAGATGAGAATTGGGAC AATTTCTTTAATTCTATAGTTCCTGAAAGTCTGGATCATGAGCACCATTG CAGTAACGCTTTTGATGTATTATATTAA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
Term | Definition |
IPR010402 | CCT_domain |
Vocabulary: Molecular Function
Term | Definition |
GO:0005515 | protein binding |
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