rna-TanjilR_03216
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_03216 vs. DB:Swiss
Match: BLH2_ARATH (BEL1-like homeodomain protein 2 OS=Arabidopsis thaliana OX=3702 GN=BLH2 PE=1 SV=3) HSP 1 Score: 118.627 bits (296), Expect = 1.436e-31 Identity = 59/125 (47.20%), Postives = 88/125 (70.40%), Query Frame = 1
Query: 3046 VVSSFESVAGLSSATPYISLALKSVSRHFKCLKNGISNQVKLVCEVLGEDXXXXXXXXXXXXGKFDTNIARLRCMDQSSQKNKSGGSNMDIVESQQHLWRPQRGLPDRAVTILKAWLFEHFLHPY 3420
VV+SF+ V G +A PY +LA K++SRHF+CLK+ ++ Q+K CE+LG+ + +S+ + G+ RLR ++QS ++N++ M ++E Q WRPQRGLP+R+V IL+AWLFEHFLHPY
Sbjct: 408 VVNSFDIVMGHGAALPYTALAQKAMSRHFRCLKDAVAAQLKQSCELLGDKDAAGISSSGLTKGE----TPRLRLLEQSLRQNRAF-HQMGMME--QEAWRPQRGLPERSVNILRAWLFEHFLHPY 525 HSP 2 Score: 42.3578 bits (98), Expect = 1.436e-31 Identity = 19/35 (54.29%), Postives = 23/35 (65.71%), Query Frame = 3
Query: 3528 YPSDTDKHMLASQTGLSRNQVGVYSF*FHYHVYTP 3632
YPSD DKH+LA QTGLSRNQV + ++ P
Sbjct: 525 YPSDADKHLLARQTGLSRNQVSNWFINARVRLWKP 559
BLAST of rna-TanjilR_03216 vs. DB:Swiss
Match: BLH4_ARATH (BEL1-like homeodomain protein 4 OS=Arabidopsis thaliana OX=3702 GN=BLH4 PE=1 SV=2) HSP 1 Score: 115.931 bits (289), Expect = 1.230e-30 Identity = 57/125 (45.60%), Postives = 87/125 (69.60%), Query Frame = 1
Query: 3046 VVSSFESVAGLSSATPYISLALKSVSRHFKCLKNGISNQVKLVCEVLGEDXXXXXXXXXXXXGKFDTNIARLRCMDQSSQKNKSGGSNMDIVESQQHLWRPQRGLPDRAVTILKAWLFEHFLHPY 3420
VV+SF+ V G +A PY +LA K++SRHF+CLK+ ++ Q+K CE+LG+ + S+ + G+ RLR ++QS ++ ++ +M ++E Q WRPQRGLP+R+V IL+AWLFEHFL+PY
Sbjct: 334 VVNSFDQVMGYGAAVPYTTLAQKAMSRHFRCLKDAVAVQLKRSCELLGDKEAAGAASSGLTKGE----TPRLRLLEQSLRQQRAF-HHMGMME--QEAWRPQRGLPERSVNILRAWLFEHFLNPY 451 HSP 2 Score: 41.9726 bits (97), Expect = 1.230e-30 Identity = 18/21 (85.71%), Postives = 19/21 (90.48%), Query Frame = 3
Query: 3528 YPSDTDKHMLASQTGLSRNQV 3590
YPSD DKH+LA QTGLSRNQV
Sbjct: 451 YPSDADKHLLARQTGLSRNQV 471
BLAST of rna-TanjilR_03216 vs. DB:Swiss
Match: BLH1_ARATH (BEL1-like homeodomain protein 1 OS=Arabidopsis thaliana OX=3702 GN=BLH1 PE=1 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 5.683e-29 Identity = 57/125 (45.60%), Postives = 81/125 (64.80%), Query Frame = 1
Query: 3046 VVSSFESVAGLSSATPYISLALKSVSRHFKCLKNGISNQVKLVCEVLGEDXXXXXXXXXXXXGKFDTNIARLRCMDQSSQKNKSGGSNMDIVESQQHLWRPQRGLPDRAVTILKAWLFEHFLHPY 3420
V+SSFE AG+ SA Y SLALK++SR F+CLK I+ Q+K + LGE+ S+ G+F+ +RL+ +D ++ ++ I + WRPQRGLP+RAV++L+AWLFEHFLHPY
Sbjct: 296 VISSFEQAAGIGSAKSYTSLALKTISRQFRCLKEAIAGQIKAANKSLGEEDSVSGV------GRFEG--SRLKFVDHHLRQQRALQQLGMIQHPSNNAWRPQRGLPERAVSVLRAWLFEHFLHPY 412 HSP 2 Score: 39.2762 bits (90), Expect = 5.683e-29 Identity = 17/35 (48.57%), Postives = 23/35 (65.71%), Query Frame = 3
Query: 3528 YPSDTDKHMLASQTGLSRNQVGVYSF*FHYHVYTP 3632
YP D+DKHMLA QTGL+R+QV + ++ P
Sbjct: 412 YPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKP 446
BLAST of rna-TanjilR_03216 vs. DB:Swiss
Match: BLH7_ARATH (BEL1-like homeodomain protein 7 OS=Arabidopsis thaliana OX=3702 GN=BLH7 PE=1 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 1.171e-28 Identity = 54/125 (43.20%), Postives = 81/125 (64.80%), Query Frame = 1
Query: 3046 VVSSFESVAGLSSATPYISLALKSVSRHFKCLKNGISNQVKLVCEVLGEDXXXXXXXXXXXXGKFDTNIARLRCMDQSSQKNKSGGSNMDIVESQQHLWRPQRGLPDRAVTILKAWLFEHFLHPY 3420
VVSSF+ +AG +A PY +LAL+++SRHF+CL++ IS Q+ ++ + LG + I+RLR +DQ ++ ++ + ++ Q H WRPQRGLPD +V +L+AWLFEHFLHPY
Sbjct: 199 VVSSFDVIAGCGAAKPYTALALQTISRHFRCLRDAISGQILVIRKSLGGEQDGSDGRG--------VGISRLRNVDQQVRQQRAL-QRLGVM--QPHTWRPQRGLPDSSVLVLRAWLFEHFLHPY 312 HSP 2 Score: 39.2762 bits (90), Expect = 1.171e-28 Identity = 20/46 (43.48%), Postives = 25/46 (54.35%), Query Frame = 3
Query: 3528 YPSDTDKHMLASQTGLSRNQVGVYSF*FHYHVYTPF--SIYLMEFV 3659
YP D+DK MLA QTGLSR QV + ++ P +Y EF
Sbjct: 312 YPKDSDKIMLARQTGLSRGQVSNWFINARVRLWKPMVEEMYKEEFT 357
BLAST of rna-TanjilR_03216 vs. DB:Swiss
Match: BEL1_ARATH (Homeobox protein BEL1 homolog OS=Arabidopsis thaliana OX=3702 GN=BEL1 PE=1 SV=2) HSP 1 Score: 107.842 bits (268), Expect = 4.619e-28 Identity = 53/116 (45.69%), Postives = 75/116 (64.66%), Query Frame = 1
Query: 3073 GLSSATPYISLALKSVSRHFKCLKNGISNQVKLVCEVLGEDXXXXXXXXXXXXGKFDTNIARLRCMDQSSQKNKSGGSNMDIVESQQHLWRPQRGLPDRAVTILKAWLFEHFLHPY 3420
GL A Y +LA +++SRHF+CLK+G+ Q++ + LGE + + G+ RLR +DQ+ ++ KS M +V++ H WRPQRGLP+RAVT L+AWLFEHFLHPY
Sbjct: 310 GLGGAEIYTALASRAMSRHFRCLKDGLVGQIQATSQALGEREEDNRAVSIAARGE----TPRLRLLDQALRQQKSY-RQMTLVDA--HPWRPQRGLPERAVTTLRAWLFEHFLHPY 418 HSP 2 Score: 41.5874 bits (96), Expect = 4.619e-28 Identity = 20/46 (43.48%), Postives = 27/46 (58.70%), Query Frame = 3
Query: 3528 YPSDTDKHMLASQTGLSRNQVGVYSF*FHYHVYTPFSIYLMEFVCD 3665
YPSD DKH+LA QTGLSR+QV + ++ P + E C+
Sbjct: 418 YPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPM---IEEMYCE 460
BLAST of rna-TanjilR_03216 vs. DB:Swiss
Match: BLH10_ARATH (BEL1-like homeodomain protein 10 OS=Arabidopsis thaliana OX=3702 GN=BLH10 PE=1 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 8.730e-28 Identity = 55/125 (44.00%), Postives = 76/125 (60.80%), Query Frame = 1
Query: 3046 VVSSFESVAGLSSATPYISLALKSVSRHFKCLKNGISNQVKLVCEVLGEDXXXXXXXXXXXXGKFDTNIARLRCMDQSSQKNKSGGSNMDIVESQQHLWRPQRGLPDRAVTILKAWLFEHFLHPY 3420
+ SSFE VAGL SA PY S+AL +SRHF+ L++ I Q+++V E LGE I RLR +DQ ++ ++ + +V WRPQRGLP+ +V++L+AWLFEHFLHPY
Sbjct: 263 LASSFEIVAGLGSAKPYTSVALNRISRHFRALRDAIKEQIQIVREKLGEKGGESLDEQQGE------RIPRLRYLDQRLRQQRALHQQLGMVRP---AWRPQRGLPENSVSVLRAWLFEHFLHPY 378 HSP 2 Score: 36.5798 bits (83), Expect = 8.730e-28 Identity = 18/45 (40.00%), Postives = 26/45 (57.78%), Query Frame = 3
Query: 3528 YPSDTDKHMLASQTGLSRNQVGVYSF*FHYHVYTPF--SIYLMEF 3656
YP +++K MLA QTGLS+NQV + ++ P +Y EF
Sbjct: 378 YPKESEKIMLAKQTGLSKNQVANWFINARVRLWKPMIEEMYKEEF 422
BLAST of rna-TanjilR_03216 vs. DB:Swiss
Match: BLH8_ARATH (BEL1-like homeodomain protein 8 OS=Arabidopsis thaliana OX=3702 GN=BLH8 PE=1 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.699e-27 Identity = 61/151 (40.40%), Postives = 87/151 (57.62%), Query Frame = 1
Query: 2968 DLCKCFALVHNKVTXXXXXXXXXXXXVVSSFESVAGLSSATPYISLALKSVSRHFKCLKNGISNQVKLVCEVLGEDXXXXXXXXXXXXGKFDTNIARLRCMDQSSQKNKSGGSNMDIVESQQHLWRPQRGLPDRAVTILKAWLFEHFLHPY 3420
++CK + L ++++ Q V+SSF +VAGL++ATPYISLALK SR FK L+ I+ VK + +S ++ +F R R + G+N+ QQH+WRPQRGLP+RAV +L+AWLF+HFLHPY
Sbjct: 333 EVCKWYKLYNHQL-----------QTVMSSFNTVAGLNTATPYISLALKRTSRSFKALRTAIAEHVKQISSH---------SSNGNNNNRFQ---KRQRSLI---------GNNVGFESQQQHIWRPQRGLPERAVAVLRAWLFDHFLHPY 451 HSP 2 Score: 41.5874 bits (96), Expect = 1.699e-27 Identity = 18/35 (51.43%), Postives = 24/35 (68.57%), Query Frame = 3
Query: 3528 YPSDTDKHMLASQTGLSRNQVGVYSF*FHYHVYTP 3632
YP+D+DK MLA+QTGLSRNQV + ++ P
Sbjct: 451 YPTDSDKQMLATQTGLSRNQVSNWFINARVRLWKP 485 HSP 3 Score: 63.5438 bits (153), Expect = 1.367e-8 Identity = 40/107 (37.38%), Postives = 55/107 (51.40%), Query Frame = 1
Query: 916 GPLGPFTGYATILKCSRFLKPCQELLDQLC----SRCRGLSASTSADVDENWVAEKRGISGASSFTLFYNSNEDTAADGGALRSFCISSRPECQMNKANLLFMQEEV 1224
GPLGPFTGYA+ILK SRFL+P Q++L++ C S+ S STS + D++ G S +S P+ ++ KA LLF+QEEV
Sbjct: 251 GPLGPFTGYASILKSSRFLEPAQKMLEEFCISYASKIISRSESTSMEDDDDDDDNLSGFSSSSE-----------------------PLEPKNRLKKAKLLFLQEEV 334 HSP 4 Score: 61.2326 bits (147), Expect = 7.198e-8 Identity = 31/50 (62.00%), Postives = 33/50 (66.00%), Query Frame = 2
Query: 4280 LIKWQVSNWFINARVRVWKPMVEEIHNLETKG---TTTGANNNPSKNEGT 4420
L + QVSNWFINARVR+WKPMVEEIH LETK T N PS T
Sbjct: 466 LSRNQVSNWFINARVRLWKPMVEEIHTLETKAIKNADTSHNIEPSNRPNT 515
BLAST of rna-TanjilR_03216 vs. DB:Swiss
Match: BLH6_ARATH (BEL1-like homeodomain protein 6 OS=Arabidopsis thaliana OX=3702 GN=BLH6 PE=1 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 2.790e-27 Identity = 55/125 (44.00%), Postives = 78/125 (62.40%), Query Frame = 1
Query: 3046 VVSSFESVAGLSSATPYISLALKSVSRHFKCLKNGISNQVKLVCEVLGEDXXXXXXXXXXXXGKFDTNIARLRCMDQSSQKNKSGGSNMDIVESQQHLWRPQRGLPDRAVTILKAWLFEHFLHPY 3420
VVSSF+ +AG +A PY +LAL+++SRHF+ L++ IS Q+ ++ + LGE S GK I+RL+ +DQ ++ + Q WRPQRGLP+ +V IL+AWLFEHFLHPY
Sbjct: 232 VVSSFDVIAGYGAAKPYTALALQTISRHFRSLRDAISGQILVLRKCLGE-------QQDGSDGKRVGIISRLKYVDQHLRQQRGF--------MQPQAWRPQRGLPENSVLILRAWLFEHFLHPY 341 HSP 2 Score: 40.4318 bits (93), Expect = 2.790e-27 Identity = 21/46 (45.65%), Postives = 25/46 (54.35%), Query Frame = 3
Query: 3528 YPSDTDKHMLASQTGLSRNQVGVYSF*FHYHVYTPF--SIYLMEFV 3659
YP D+DK MLA QTGLSR QV + ++ P IY EF
Sbjct: 341 YPKDSDKIMLARQTGLSRGQVSNWFINARVRLWKPMVEEIYKEEFT 386
BLAST of rna-TanjilR_03216 vs. DB:Swiss
Match: BLH9_ARATH (BEL1-like homeodomain protein 9 OS=Arabidopsis thaliana OX=3702 GN=BLH9 PE=1 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 7.307e-27 Identity = 54/125 (43.20%), Postives = 73/125 (58.40%), Query Frame = 1
Query: 3046 VVSSFESVAGLSSATPYISLALKSVSRHFKCLKNGISNQVKLVCEVLGEDXXXXXXXXXXXXGKFDTNIARLRCMDQSSQKNKSGGSNMDIVESQQHLWRPQRGLPDRAVTILKAWLFEHFLHPY 3420
V+ SFE VAGL A PY +LALK++S+HFKCLKN I++Q++ + + T+ R D SS+ S G + +WRP RGLP+RAVT+L+AWLF+HFLHPY
Sbjct: 255 VMGSFECVAGLGHAAPYANLALKALSKHFKCLKNAITDQLQFSHN---NKIQQQQQCGHPMNSENKTDSLRFGGSD-SSRGLCSAGQRHGFPDHHAPVWRPHRGLPERAVTVLRAWLFDHFLHPY 375 HSP 2 Score: 43.8986 bits (102), Expect = 7.307e-27 Identity = 22/44 (50.00%), Postives = 28/44 (63.64%), Query Frame = 3
Query: 3528 YPSDTDKHMLASQTGLSRNQVGVYSF*FHYHVYTPF--SIYLME 3653
YP+DTDK MLA QTGLSRNQV + V+ P I+++E
Sbjct: 375 YPTDTDKLMLAKQTGLSRNQVSNWFINARVRVWKPMVEEIHMLE 418 HSP 3 Score: 62.3882 bits (150), Expect = 2.702e-8 Identity = 27/39 (69.23%), Postives = 32/39 (82.05%), Query Frame = 1
Query: 907 RNIGPLGPFTGYATILKCSRFLKPCQELLDQLCSRCRGL 1023
R+ GPLGPFTGYA+ILK SRFLKP Q LLD+ C+ RG+
Sbjct: 156 RSSGPLGPFTGYASILKGSRFLKPAQMLLDEFCNVGRGI 194 HSP 4 Score: 58.5362 bits (140), Expect = 4.117e-7 Identity = 26/30 (86.67%), Postives = 27/30 (90.00%), Query Frame = 2
Query: 4280 LIKWQVSNWFINARVRVWKPMVEEIHNLET 4369
L + QVSNWFINARVRVWKPMVEEIH LET
Sbjct: 390 LSRNQVSNWFINARVRVWKPMVEEIHMLET 419
BLAST of rna-TanjilR_03216 vs. DB:Swiss
Match: BLH3_ARATH (BEL1-like homeodomain protein 3 OS=Arabidopsis thaliana OX=3702 GN=BLH3 PE=1 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 7.318e-27 Identity = 54/125 (43.20%), Postives = 78/125 (62.40%), Query Frame = 1
Query: 3046 VVSSFESVAGLSSATPYISLALKSVSRHFKCLKNGISNQVKLVCEVLGEDXXXXXXXXXXXXGKFDTNIARLRCMDQSSQKNKSGGSNMDIVESQQHLWRPQRGLPDRAVTILKAWLFEHFLHPY 3420
+ SSFE V GL +A PY S+AL +SRHF+CL++ I Q++++ LGE +S + I RLR +DQ ++ ++ + +V WRPQRGLP+ +V+IL+AWLFEHFLHPY
Sbjct: 261 LASSFEMVTGLGAAKPYTSVALNRISRHFRCLRDAIKEQIQVIRGKLGE---------RETSDEQGERIPRLRYLDQRLRQQRALHQQLGMVRP---AWRPQRGLPENSVSILRAWLFEHFLHPY 373 HSP 2 Score: 35.039 bits (79), Expect = 7.318e-27 Identity = 17/45 (37.78%), Postives = 26/45 (57.78%), Query Frame = 3
Query: 3528 YPSDTDKHMLASQTGLSRNQVGVYSF*FHYHVYTPF--SIYLMEF 3656
YP +++K ML+ QTGLS+NQV + ++ P +Y EF
Sbjct: 373 YPKESEKIMLSKQTGLSKNQVANWFINARVRLWKPMIEEMYKEEF 417 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_03216 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_03216_La_Tanjil_v1.0 ID=rna-TanjilR_03216_La_Tanjil_v1.0; Name=rna-TanjilR_03216; organism=Lupinus angustifolius; type=mRNA; length=4741bpback to top protein sequence of rna-TanjilR_03216_La_Tanjil_v1.0 >rna-TanjilR_03216_La_Tanjil_v1.0 ID=rna-TanjilR_03216_La_Tanjil_v1.0; Name=rna-TanjilR_03216_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=735bpback to top mRNA from alignment at Chr_LG07-CM007367.1:2158588..2163328+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_03216_La_Tanjil_v1.0 ID=rna-TanjilR_03216_La_Tanjil_v1.0; Name=rna-TanjilR_03216; organism=Lupinus angustifolius; type=mRNA; length=4741bp; location=Sequence derived from: Chr_LG07-CM007367.1:2158588..2163328+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG07-CM007367.1:2158588..2163328+ >rna-TanjilR_03216_La_Tanjil_v1.0 ID=rna-TanjilR_03216_La_Tanjil_v1.0; Name=rna-TanjilR_03216; organism=Lupinus angustifolius; type=CDS; length=2208bp; location=Sequence derived from: Chr_LG07-CM007367.1:2158588..2163328+ (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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